Wall clock time and date at job start Mon Mar 30 2020 07:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33393 * 125.20205 * 2 1 4 4 C 1.38427 * 114.91854 * 179.74902 * 3 2 1 5 5 C 1.33386 * 114.92179 * 0.42793 * 4 3 2 6 6 C 1.50704 * 125.20445 * 179.86434 * 5 4 3 7 7 H 1.09000 * 109.47081 * 339.71253 * 6 5 4 8 8 C 1.52992 * 109.47325 * 99.71878 * 6 5 4 9 9 N 1.46898 * 109.46738 * 219.71890 * 6 5 4 10 10 C 1.46901 * 111.00443 * 56.04446 * 9 6 5 11 11 C 1.46906 * 110.99820 * 179.97438 * 9 6 5 12 12 C 1.52996 * 109.47022 * 169.99926 * 11 9 6 13 13 C 1.50708 * 109.46924 * 180.02562 * 12 11 9 14 14 H 1.07994 * 119.99744 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99843 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99853 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00240 * 359.97438 * 15 13 12 18 18 H 1.48490 * 109.47053 * 89.99828 * 17 15 13 19 19 H 1.48500 * 109.46929 * 210.00519 * 17 15 13 20 20 H 1.48500 * 109.46590 * 330.00040 * 17 15 13 21 21 S 1.75885 * 125.20453 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.47297 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47279 * 300.00209 * 1 2 3 24 24 H 1.09007 * 109.47028 * 60.00170 * 1 2 3 25 25 H 1.07994 * 122.54136 * 359.97438 * 3 2 1 26 26 H 1.07997 * 122.53850 * 180.27509 * 4 3 2 27 27 H 1.09007 * 109.46908 * 299.99721 * 8 6 5 28 28 H 1.09000 * 109.47552 * 59.99663 * 8 6 5 29 29 H 1.08998 * 109.47057 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 10 9 6 31 31 H 1.09001 * 109.46874 * 63.95149 * 10 9 6 32 32 H 1.09004 * 109.46970 * 303.95282 * 10 9 6 33 33 H 1.08997 * 109.46995 * 289.99871 * 11 9 6 34 34 H 1.09001 * 109.46848 * 49.99877 * 11 9 6 35 35 H 1.08997 * 109.47190 * 299.99825 * 12 11 9 36 36 H 1.09001 * 109.47349 * 60.00258 * 12 11 9 37 37 H 0.96998 * 120.00061 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 0.0055 5 6 3.9751 -0.4477 0.0009 6 6 5.3861 -0.9771 0.0024 7 1 6.0658 -0.2007 -0.3489 8 6 5.7743 -1.3902 1.4234 9 7 5.4726 -2.1427 -0.8874 10 6 5.0165 -1.8057 -2.2425 11 6 6.8371 -2.6864 -0.9116 12 6 6.8373 -4.0314 -1.6408 13 6 8.2370 -4.5894 -1.6651 14 1 9.0454 -4.0398 -1.2060 15 6 8.4855 -5.8015 -2.2734 16 7 9.7069 -6.2887 -2.2942 17 14 7.0870 -6.7525 -3.0668 18 1 6.9569 -6.3467 -4.4893 19 1 7.3725 -8.2078 -2.9912 20 1 5.8198 -6.4588 -2.3504 21 16 2.5209 -1.4372 0.0006 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.8669 2.0895 -0.0004 26 1 4.3720 1.6350 0.0105 27 1 5.7102 -0.5252 2.0836 28 1 5.0946 -2.1666 1.7747 29 1 6.7947 -1.7735 1.4243 30 1 5.0244 -2.7025 -2.8621 31 1 5.6828 -1.0593 -2.6750 32 1 4.0037 -1.4053 -2.1959 33 1 7.4960 -1.9911 -1.4317 34 1 7.1905 -2.8267 0.1099 35 1 6.1784 -4.7267 -1.1207 36 1 6.4839 -3.8910 -2.6623 37 1 9.8818 -7.1412 -2.7225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052132530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:50 Heat of formation + Delta-G solvation = 27.430760 kcal Electronic energy + Delta-G solvation = -16441.529414 eV Core-core repulsion = 13924.305711 eV Total energy + Delta-G solvation = -2517.223703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.68271 -37.14868 -33.47233 -32.28240 -30.71200 -29.74823 -26.84422 -25.41718 -24.00002 -22.91551 -21.14769 -19.71403 -18.79076 -16.99577 -16.53920 -15.42308 -15.23747 -14.58891 -14.14587 -13.98697 -13.75344 -13.53972 -13.20739 -12.69613 -12.54699 -12.39578 -12.19301 -11.87307 -11.79026 -11.50764 -11.32268 -11.17518 -11.07035 -10.75107 -10.52098 -9.90181 -9.82570 -9.72267 -9.18631 -8.51276 -8.39266 -8.30393 -7.90028 -6.03208 -4.01256 1.04096 1.70355 2.16623 2.74921 3.33261 3.40795 3.47262 4.30033 4.47800 4.75829 4.83814 5.13309 5.31440 5.34112 5.35028 5.39839 5.49583 5.59242 5.62953 5.76663 5.84420 5.92113 6.03400 6.10897 6.19086 6.29793 6.31375 6.36474 6.38651 6.53650 6.80468 7.16503 7.30065 7.57234 7.62545 7.85804 8.54140 9.00777 9.59529 11.10167 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.004893 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.526036 B = 5721.013268 C = 6171.952080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.205 4.205 3 C -0.141 4.141 4 C -0.147 4.147 5 C -0.157 4.157 6 C 0.146 3.854 7 H 0.054 0.946 8 C -0.143 4.143 9 N -0.540 5.540 10 C 0.021 3.979 11 C 0.067 3.933 12 C -0.006 4.006 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.262 1.262 21 S 0.147 5.853 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.021 0.979 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.011 0.989 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.716 14.118 5.142 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.323 4.323 3 C -0.172 4.172 4 C -0.178 4.178 5 C -0.275 4.275 6 C 0.036 3.964 7 H 0.071 0.929 8 C -0.201 4.201 9 N -0.265 5.265 10 C -0.127 4.127 11 C -0.059 4.059 12 C -0.044 4.044 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.187 1.187 21 S 0.412 5.588 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.200 12.036 5.276 21.646 hybrid contribution 0.323 1.651 -0.870 1.894 sum -16.877 13.688 4.407 22.172 Atomic orbital electron populations 1.20265 0.88285 1.02654 1.02500 1.24671 1.00012 0.97177 1.10420 1.19914 0.92808 0.98964 1.05509 1.19992 0.96144 0.95722 1.05903 1.24552 0.98711 0.96209 1.08057 1.20094 0.88998 0.92252 0.95071 0.92862 1.21921 1.02659 1.01490 0.94017 1.62228 1.26761 1.28226 1.09282 1.22461 0.99487 1.00720 0.90062 1.22239 0.85027 0.97378 1.01273 1.19563 0.97715 0.92176 0.94949 1.21082 0.93017 1.05026 1.36815 0.91146 1.24984 0.95410 0.97232 0.95673 1.69915 1.19743 1.19858 1.44828 0.86782 0.83544 0.79029 0.80040 1.20384 1.21422 1.18692 1.84577 0.95040 1.07524 1.71670 0.91626 0.90969 0.90948 0.85042 0.84887 0.92425 0.91628 0.91123 0.90635 0.96037 0.92053 0.95487 0.90819 0.95712 0.97050 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.38 36.00 0.37 -0.28 16 2 C -0.21 -2.31 6.51 -36.00 -0.23 -2.55 16 3 C -0.14 -1.57 10.05 -41.21 -0.41 -1.99 16 4 C -0.15 -1.79 10.04 -41.21 -0.41 -2.20 16 5 C -0.16 -2.14 4.02 -36.00 -0.14 -2.29 16 6 C 0.15 2.16 2.50 -68.87 -0.17 1.99 16 7 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 8 C -0.14 -1.97 8.97 37.15 0.33 -1.64 16 9 N -0.54 -9.46 4.41 -236.28 -1.04 -10.50 16 10 C 0.02 0.35 8.97 60.07 0.54 0.89 16 11 C 0.07 1.36 4.71 -3.82 -0.02 1.35 16 12 C -0.01 -0.15 3.97 -27.88 -0.11 -0.26 16 13 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 17 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 21 S 0.15 1.95 21.99 -107.50 -2.36 -0.42 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 26 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.01 6.20 -51.93 -0.32 0.69 16 30 H 0.07 1.33 6.47 -51.93 -0.34 0.99 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.93 5.97 -51.93 -0.31 0.62 16 33 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 34 H 0.07 1.47 5.83 -51.93 -0.30 1.17 16 35 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 36 H 0.01 0.27 5.98 -51.93 -0.31 -0.04 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -30.74 308.98 -9.10 -39.84 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.77 Total: -3.29 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.69 Total: -20.35 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.27 Total: -37.82 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.36 Total: -0.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.74 -9.10 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052132530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.270 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds