Wall clock time and date at job start Mon Mar 30 2020 07:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33393 * 125.20205 * 2 1 4 4 C 1.38427 * 114.91854 * 179.74902 * 3 2 1 5 5 C 1.33386 * 114.92179 * 0.42793 * 4 3 2 6 6 C 1.50704 * 125.20445 * 179.86434 * 5 4 3 7 7 H 1.09000 * 109.47081 * 339.71253 * 6 5 4 8 8 C 1.52992 * 109.47325 * 99.71878 * 6 5 4 9 9 N 1.46898 * 109.46738 * 219.71890 * 6 5 4 10 10 C 1.46901 * 111.00443 * 56.04446 * 9 6 5 11 11 C 1.46906 * 110.99820 * 179.97438 * 9 6 5 12 12 C 1.52996 * 109.47022 * 169.99926 * 11 9 6 13 13 C 1.50708 * 109.46924 * 180.02562 * 12 11 9 14 14 H 1.07994 * 119.99744 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99843 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99853 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00240 * 359.97438 * 15 13 12 18 18 H 1.48490 * 109.47053 * 89.99828 * 17 15 13 19 19 H 1.48500 * 109.46929 * 210.00519 * 17 15 13 20 20 H 1.48500 * 109.46590 * 330.00040 * 17 15 13 21 21 S 1.75885 * 125.20453 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.47297 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47279 * 300.00209 * 1 2 3 24 24 H 1.09007 * 109.47028 * 60.00170 * 1 2 3 25 25 H 1.07994 * 122.54136 * 359.97438 * 3 2 1 26 26 H 1.07997 * 122.53850 * 180.27509 * 4 3 2 27 27 H 1.09007 * 109.46908 * 299.99721 * 8 6 5 28 28 H 1.09000 * 109.47552 * 59.99663 * 8 6 5 29 29 H 1.08998 * 109.47057 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 10 9 6 31 31 H 1.09001 * 109.46874 * 63.95149 * 10 9 6 32 32 H 1.09004 * 109.46970 * 303.95282 * 10 9 6 33 33 H 1.08997 * 109.46995 * 289.99871 * 11 9 6 34 34 H 1.09001 * 109.46848 * 49.99877 * 11 9 6 35 35 H 1.08997 * 109.47190 * 299.99825 * 12 11 9 36 36 H 1.09001 * 109.47349 * 60.00258 * 12 11 9 37 37 H 0.96998 * 120.00061 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 0.0055 5 6 3.9751 -0.4477 0.0009 6 6 5.3861 -0.9771 0.0024 7 1 6.0658 -0.2007 -0.3489 8 6 5.7743 -1.3902 1.4234 9 7 5.4726 -2.1427 -0.8874 10 6 5.0165 -1.8057 -2.2425 11 6 6.8371 -2.6864 -0.9116 12 6 6.8373 -4.0314 -1.6408 13 6 8.2370 -4.5894 -1.6651 14 1 9.0454 -4.0398 -1.2060 15 6 8.4855 -5.8015 -2.2734 16 7 9.7069 -6.2887 -2.2942 17 14 7.0870 -6.7525 -3.0668 18 1 6.9569 -6.3467 -4.4893 19 1 7.3725 -8.2078 -2.9912 20 1 5.8198 -6.4588 -2.3504 21 16 2.5209 -1.4372 0.0006 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.8669 2.0895 -0.0004 26 1 4.3720 1.6350 0.0105 27 1 5.7102 -0.5252 2.0836 28 1 5.0946 -2.1666 1.7747 29 1 6.7947 -1.7735 1.4243 30 1 5.0244 -2.7025 -2.8621 31 1 5.6828 -1.0593 -2.6750 32 1 4.0037 -1.4053 -2.1959 33 1 7.4960 -1.9911 -1.4317 34 1 7.1905 -2.8267 0.1099 35 1 6.1784 -4.7267 -1.1207 36 1 6.4839 -3.8910 -2.6623 37 1 9.8818 -7.1412 -2.7225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052132530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:50 Heat of formation + Delta-G solvation = 9.262893 kcal Electronic energy + Delta-G solvation = -16442.317231 eV Core-core repulsion = 13924.305711 eV Total energy + Delta-G solvation = -2518.011520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -39.83932 -38.26755 -35.34237 -33.76095 -31.95092 -31.27210 -28.10868 -26.73763 -25.49538 -23.94941 -22.61273 -21.26800 -19.74221 -19.01029 -17.76476 -16.58777 -16.48884 -16.21520 -15.76305 -15.13252 -15.06716 -14.63832 -14.56913 -14.16043 -13.89359 -13.48445 -13.29597 -13.24057 -12.94650 -12.88225 -12.68491 -12.50912 -12.27851 -12.18463 -11.79977 -11.64383 -11.58308 -11.43071 -11.33178 -10.75322 -9.32510 -9.30107 -9.26185 -8.30356 -6.34203 0.12032 0.76705 1.23980 1.34989 1.37530 1.50670 1.86271 2.36013 2.96639 3.05442 3.70039 4.05703 4.18000 4.22063 4.28594 4.43040 4.46694 4.61566 4.63712 4.69036 4.79031 4.79158 4.83340 4.87983 4.96563 5.02627 5.13891 5.22770 5.28580 5.34392 5.39049 5.47151 5.62674 5.67735 6.09108 6.17110 6.29644 6.73277 7.30659 8.86307 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.004893 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.526036 B = 5721.013268 C = 6171.952080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.193 4.193 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.178 4.178 6 C 0.148 3.852 7 H 0.057 0.943 8 C -0.139 4.139 9 N -0.545 5.545 10 C 0.024 3.976 11 C 0.080 3.920 12 C 0.001 3.999 13 C -0.532 4.532 14 H 0.034 0.966 15 C 0.009 3.991 16 N -0.950 5.950 17 Si 0.948 3.052 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.250 1.250 21 S 0.103 5.897 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.158 0.842 26 H 0.149 0.851 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.024 0.976 32 H 0.076 0.924 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.380 15.476 4.995 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.311 4.311 3 C -0.179 4.179 4 C -0.168 4.168 5 C -0.296 4.296 6 C 0.038 3.962 7 H 0.074 0.926 8 C -0.197 4.197 9 N -0.270 5.270 10 C -0.124 4.124 11 C -0.047 4.047 12 C -0.036 4.036 13 C -0.570 4.570 14 H 0.052 0.948 15 C -0.188 4.188 16 N -0.590 5.590 17 Si 0.772 3.228 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.174 1.174 21 S 0.368 5.632 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.175 0.825 26 H 0.166 0.834 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.091 0.909 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.874 13.419 5.137 24.524 hybrid contribution 1.154 1.338 -0.768 1.927 sum -18.720 14.757 4.369 24.234 Atomic orbital electron populations 1.20399 0.86158 1.03316 1.03991 1.25036 1.01266 0.95823 1.08928 1.20199 0.92311 1.00145 1.05288 1.20278 0.97163 0.95424 1.03919 1.24353 0.97769 0.96745 1.10741 1.20093 0.90294 0.91160 0.94640 0.92571 1.21891 1.01615 1.02108 0.94083 1.62133 1.24410 1.30182 1.10258 1.22435 1.00382 1.00200 0.89372 1.21918 0.86836 0.95501 1.00474 1.19423 0.94637 0.93925 0.95659 1.21405 0.94342 1.05077 1.36192 0.94755 1.25926 0.98140 0.98390 0.96343 1.70057 1.22158 1.20648 1.46187 0.85684 0.80258 0.77468 0.79431 1.19122 1.20804 1.17374 1.84699 0.96195 1.09580 1.72745 0.91459 0.89284 0.89444 0.82466 0.83380 0.90277 0.92474 0.92213 0.91902 0.95758 0.90548 0.96218 0.90947 0.96218 0.96545 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.38 71.24 0.74 -0.33 16 2 C -0.19 -3.81 6.51 24.59 0.16 -3.65 16 3 C -0.15 -2.84 10.05 21.22 0.21 -2.63 16 4 C -0.14 -2.96 10.04 21.22 0.21 -2.74 16 5 C -0.18 -4.56 4.02 24.59 0.10 -4.46 16 6 C 0.15 4.22 2.50 44.17 0.11 4.33 16 7 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 8 C -0.14 -3.73 8.97 71.98 0.65 -3.09 16 9 N -0.55 -18.74 4.41 -901.46 -3.98 -22.71 16 10 C 0.02 0.79 8.97 127.69 1.15 1.93 16 11 C 0.08 3.26 4.71 86.30 0.41 3.67 16 12 C 0.00 0.06 3.97 29.85 0.12 0.18 16 13 C -0.53 -31.25 9.66 25.60 0.25 -31.00 16 14 H 0.03 2.20 7.99 -2.91 -0.02 2.17 16 15 C 0.01 0.54 5.47 84.65 0.46 1.00 16 16 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 17 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 20 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 21 S 0.10 2.59 21.99 -56.49 -1.24 1.35 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 26 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 27 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.70 6.20 -2.39 -0.01 1.69 16 30 H 0.06 2.15 6.47 -2.39 -0.02 2.14 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 2.22 5.97 -2.38 -0.01 2.20 16 33 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 34 H 0.07 2.95 5.83 -2.39 -0.01 2.94 16 35 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 36 H 0.02 0.78 5.98 -2.39 -0.01 0.76 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -66.29 308.98 2.51 -63.79 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.98 Total: 7.05 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 4.56 Total: -36.79 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.68 Total: -82.68 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.24 Total: 1.35 kcal Total: -66.29 2.51 -63.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052132530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.049 kcal (2) G-P(sol) polarization free energy of solvation -66.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds