Wall clock time and date at job start Mon Mar 30 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47667 * 2 1 4 4 C 1.50702 * 109.46985 * 240.00334 * 2 1 3 5 5 H 1.08007 * 119.99841 * 245.42012 * 4 2 1 6 6 C 1.37872 * 120.00440 * 65.42009 * 4 2 1 7 7 N 1.31519 * 119.99538 * 5.20945 * 6 4 2 8 8 Si 1.86795 * 120.00129 * 185.20432 * 6 4 2 9 9 H 1.48500 * 109.47180 * 95.00024 * 8 6 4 10 10 H 1.48500 * 109.47020 * 215.00075 * 8 6 4 11 11 H 1.48498 * 109.47528 * 334.99714 * 8 6 4 12 12 N 1.46500 * 109.47139 * 120.00562 * 2 1 3 13 13 C 1.46493 * 120.00611 * 64.72035 * 12 2 1 14 14 C 1.39675 * 119.99555 * 244.72681 * 12 2 1 15 15 C 1.38917 * 120.07630 * 354.29381 * 14 12 2 16 16 C 1.38109 * 119.92292 * 180.25272 * 15 14 12 17 17 C 1.38293 * 120.07258 * 359.45591 * 16 15 14 18 18 C 1.50702 * 119.91853 * 180.27607 * 17 16 15 19 19 Cl 1.80305 * 109.46917 * 270.26914 * 18 17 16 20 20 C 1.38285 * 120.14946 * 0.54802 * 17 16 15 21 21 C 1.38096 * 120.07764 * 359.72339 * 20 17 16 22 22 H 1.08996 * 109.46554 * 294.93341 * 1 2 3 23 23 H 1.08995 * 109.46851 * 54.93252 * 1 2 3 24 24 H 1.08998 * 109.47078 * 174.92888 * 1 2 3 25 25 H 0.97001 * 119.99741 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47415 * 270.00491 * 13 12 2 27 27 H 1.09007 * 109.46510 * 30.00692 * 13 12 2 28 28 H 1.08995 * 109.47291 * 149.99858 * 13 12 2 29 29 H 1.07989 * 120.03589 * 359.97438 * 15 14 12 30 30 H 1.08000 * 119.95635 * 179.71966 * 16 15 14 31 31 H 1.08992 * 109.47552 * 30.27402 * 18 17 16 32 32 H 1.09002 * 109.46589 * 150.27421 * 18 17 16 33 33 H 1.07997 * 119.95919 * 179.70477 * 20 17 16 34 34 H 1.08003 * 120.03992 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5791 -1.6367 -1.1339 6 6 1.7939 -0.1778 -2.4797 7 7 1.2190 0.9996 -2.5937 8 14 2.2875 -1.1283 -4.0101 9 1 1.1231 -1.9037 -4.5082 10 1 2.7353 -0.1782 -5.0599 11 1 3.3966 -2.0586 -3.6788 12 7 2.0183 -0.6907 1.1961 13 6 1.7518 -2.1198 1.3770 14 6 2.7380 0.0134 2.1642 15 6 3.0940 1.3375 1.9409 16 6 3.8102 2.0292 2.8980 17 6 4.1631 1.4085 4.0824 18 6 4.9391 2.1684 5.1271 19 17 6.7058 1.9599 4.8333 20 6 3.8103 0.0905 4.3078 21 6 3.0991 -0.6086 3.3527 22 1 -0.3632 0.4332 0.9319 23 1 -0.3633 0.5904 -0.8411 24 1 -0.3633 -1.0236 -0.0908 25 1 1.0515 1.3745 -3.4725 26 1 0.8096 -2.2492 1.9094 27 1 1.6878 -2.6036 0.4022 28 1 2.5598 -2.5700 1.9535 29 1 2.8150 1.8240 1.0180 30 1 4.0911 3.0572 2.7231 31 1 4.6839 3.2266 5.0712 32 1 4.6877 1.7858 6.1163 33 1 4.0917 -0.3926 5.2318 34 1 2.8243 -1.6381 3.5292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:58 Heat of formation + Delta-G solvation = 13.938271 kcal Electronic energy + Delta-G solvation = -16320.446956 eV Core-core repulsion = 13664.761375 eV Total energy + Delta-G solvation = -2655.685582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.15369 -36.51285 -35.50580 -33.11941 -31.07114 -30.65833 -29.09114 -26.75302 -25.27965 -24.35228 -22.13401 -21.01183 -19.34003 -16.94526 -16.33442 -15.32110 -14.94116 -14.47941 -14.21037 -13.90932 -13.64035 -13.57069 -13.05753 -12.67752 -12.38991 -11.84807 -11.74756 -11.59843 -11.36784 -11.09782 -10.90425 -10.78939 -10.57878 -10.29112 -10.23661 -10.18239 -9.92914 -9.35690 -8.83127 -8.51160 -8.43116 -6.49689 -6.13610 -4.23564 1.75935 1.97538 2.84096 3.21586 3.29532 3.32376 4.05886 4.34985 4.43874 4.98497 5.01096 5.15063 5.40495 5.43377 5.51515 5.81408 5.91893 6.09666 6.15275 6.27738 6.41826 6.46009 6.62086 6.75850 6.84884 6.91176 6.98048 7.06476 7.31627 7.45726 7.52768 7.74934 8.05405 8.22518 8.50669 8.82816 9.42941 10.89021 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.005076 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.582073 B = 5515.346954 C = 5836.944059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.261 3.739 3 H 0.059 0.941 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.602 5.602 13 C 0.096 3.904 14 C 0.248 3.752 15 C -0.202 4.202 16 C -0.048 4.048 17 C -0.202 4.202 18 C 0.032 3.968 19 Cl -0.203 7.203 20 C -0.048 4.048 21 C -0.222 4.222 22 H 0.015 0.985 23 H 0.076 0.924 24 H 0.032 0.968 25 H 0.264 0.736 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 0.170 12.245 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.160 3.840 3 H 0.077 0.923 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.048 4.048 14 C 0.139 3.861 15 C -0.224 4.224 16 C -0.067 4.067 17 C -0.205 4.205 18 C -0.030 4.030 19 Cl -0.177 7.177 20 C -0.068 4.068 21 C -0.245 4.245 22 H 0.034 0.966 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.950 0.158 11.882 12.243 hybrid contribution 0.257 -0.557 -0.993 1.167 sum 3.207 -0.399 10.889 11.358 Atomic orbital electron populations 1.22055 0.98671 1.00023 0.99389 1.18976 0.90509 0.93987 0.80505 0.92322 1.21348 1.36114 1.08877 0.90387 0.92075 1.24892 0.94941 0.94760 0.99010 1.69921 1.42710 1.15879 1.24158 0.86508 0.78767 0.79790 0.82551 1.20612 1.21072 1.19851 1.47310 1.54788 1.07882 1.20614 1.21486 0.98715 0.82495 1.02083 1.18100 0.88611 0.91282 0.88065 1.20907 1.05699 0.94328 1.01469 1.20658 0.95216 0.98722 0.92088 1.19169 1.07858 0.95864 0.97564 1.22974 0.79427 1.01667 0.98968 1.98718 1.23245 1.98368 1.97380 1.20540 0.95503 0.92964 0.97745 1.20557 1.08658 1.00556 0.94761 0.96622 0.90494 0.94838 0.92621 0.94662 0.90481 0.93020 0.84970 0.86798 0.89047 0.89165 0.87071 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.97 37.16 0.33 -2.92 16 2 C 0.26 6.22 2.45 -69.08 -0.17 6.05 16 3 H 0.06 1.51 5.29 -51.93 -0.27 1.24 16 4 C -0.53 -13.75 8.00 -34.44 -0.28 -14.03 16 5 H 0.06 1.60 6.81 -52.48 -0.36 1.24 16 6 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 7 N -0.89 -24.22 11.99 55.43 0.66 -23.55 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.60 -12.53 2.89 -173.32 -0.50 -13.03 16 13 C 0.10 1.71 9.32 59.84 0.56 2.27 16 14 C 0.25 4.83 6.54 -83.78 -0.55 4.28 16 15 C -0.20 -3.86 9.31 -39.38 -0.37 -4.23 16 16 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16 17 C -0.20 -2.94 5.26 -104.58 -0.55 -3.49 16 18 C 0.03 0.37 6.78 36.01 0.24 0.61 16 19 Cl -0.20 -2.70 29.13 -51.86 -1.51 -4.21 16 20 C -0.05 -0.72 9.69 -39.62 -0.38 -1.10 16 21 C -0.22 -3.71 9.16 -39.38 -0.36 -4.07 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.08 1.90 6.85 -51.93 -0.36 1.55 16 24 H 0.03 0.73 7.94 -51.93 -0.41 0.32 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.45 6.57 -51.92 -0.34 1.11 16 28 H 0.05 0.81 6.45 -51.93 -0.34 0.47 16 29 H 0.13 2.74 5.74 -52.49 -0.30 2.44 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.76 6.31 -52.48 -0.33 1.43 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -27.14 294.17 -8.31 -35.44 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.37 Total: 1.46 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.00 Total: -16.12 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.16 Total: -36.58 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -1.51 Total: -4.21 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.14 -8.31 -35.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.382 kcal (2) G-P(sol) polarization free energy of solvation -27.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds