Wall clock time and date at job start Mon Mar 30 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47667 * 2 1 4 4 C 1.50702 * 109.46985 * 240.00334 * 2 1 3 5 5 H 1.08007 * 119.99841 * 245.42012 * 4 2 1 6 6 C 1.37872 * 120.00440 * 65.42009 * 4 2 1 7 7 N 1.31519 * 119.99538 * 5.20945 * 6 4 2 8 8 Si 1.86795 * 120.00129 * 185.20432 * 6 4 2 9 9 H 1.48500 * 109.47180 * 95.00024 * 8 6 4 10 10 H 1.48500 * 109.47020 * 215.00075 * 8 6 4 11 11 H 1.48498 * 109.47528 * 334.99714 * 8 6 4 12 12 N 1.46500 * 109.47139 * 120.00562 * 2 1 3 13 13 C 1.46493 * 120.00611 * 64.72035 * 12 2 1 14 14 C 1.39675 * 119.99555 * 244.72681 * 12 2 1 15 15 C 1.38917 * 120.07630 * 354.29381 * 14 12 2 16 16 C 1.38109 * 119.92292 * 180.25272 * 15 14 12 17 17 C 1.38293 * 120.07258 * 359.45591 * 16 15 14 18 18 C 1.50702 * 119.91853 * 180.27607 * 17 16 15 19 19 Cl 1.80305 * 109.46917 * 270.26914 * 18 17 16 20 20 C 1.38285 * 120.14946 * 0.54802 * 17 16 15 21 21 C 1.38096 * 120.07764 * 359.72339 * 20 17 16 22 22 H 1.08996 * 109.46554 * 294.93341 * 1 2 3 23 23 H 1.08995 * 109.46851 * 54.93252 * 1 2 3 24 24 H 1.08998 * 109.47078 * 174.92888 * 1 2 3 25 25 H 0.97001 * 119.99741 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47415 * 270.00491 * 13 12 2 27 27 H 1.09007 * 109.46510 * 30.00692 * 13 12 2 28 28 H 1.08995 * 109.47291 * 149.99858 * 13 12 2 29 29 H 1.07989 * 120.03589 * 359.97438 * 15 14 12 30 30 H 1.08000 * 119.95635 * 179.71966 * 16 15 14 31 31 H 1.08992 * 109.47552 * 30.27402 * 18 17 16 32 32 H 1.09002 * 109.46589 * 150.27421 * 18 17 16 33 33 H 1.07997 * 119.95919 * 179.70477 * 20 17 16 34 34 H 1.08003 * 120.03992 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5791 -1.6367 -1.1339 6 6 1.7939 -0.1778 -2.4797 7 7 1.2190 0.9996 -2.5937 8 14 2.2875 -1.1283 -4.0101 9 1 1.1231 -1.9037 -4.5082 10 1 2.7353 -0.1782 -5.0599 11 1 3.3966 -2.0586 -3.6788 12 7 2.0183 -0.6907 1.1961 13 6 1.7518 -2.1198 1.3770 14 6 2.7380 0.0134 2.1642 15 6 3.0940 1.3375 1.9409 16 6 3.8102 2.0292 2.8980 17 6 4.1631 1.4085 4.0824 18 6 4.9391 2.1684 5.1271 19 17 6.7058 1.9599 4.8333 20 6 3.8103 0.0905 4.3078 21 6 3.0991 -0.6086 3.3527 22 1 -0.3632 0.4332 0.9319 23 1 -0.3633 0.5904 -0.8411 24 1 -0.3633 -1.0236 -0.0908 25 1 1.0515 1.3745 -3.4725 26 1 0.8096 -2.2492 1.9094 27 1 1.6878 -2.6036 0.4022 28 1 2.5598 -2.5700 1.9535 29 1 2.8150 1.8240 1.0180 30 1 4.0911 3.0572 2.7231 31 1 4.6839 3.2266 5.0712 32 1 4.6877 1.7858 6.1163 33 1 4.0917 -0.3926 5.2318 34 1 2.8243 -1.6381 3.5292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:57 Heat of formation + Delta-G solvation = 1.123203 kcal Electronic energy + Delta-G solvation = -16321.002659 eV Core-core repulsion = 13664.761375 eV Total energy + Delta-G solvation = -2656.241285 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51506 -37.95799 -36.60507 -34.92520 -32.54779 -32.00787 -30.67353 -28.03183 -27.26478 -25.73432 -23.51284 -22.49921 -20.85340 -18.59654 -18.07027 -16.94900 -16.30708 -15.95271 -15.43339 -15.22389 -15.08452 -14.90445 -14.46902 -14.06864 -13.86624 -13.55833 -13.17672 -13.01756 -12.88297 -12.81319 -12.67445 -12.44747 -12.28275 -12.12778 -11.51937 -11.28764 -11.18622 -11.08403 -10.51510 -10.37135 -9.73163 -8.26670 -7.84905 -6.30367 0.54616 0.66255 1.38770 1.40737 1.50060 1.78468 2.35668 2.63418 3.10759 3.14997 3.90937 3.96822 4.18580 4.30482 4.44525 4.60524 4.64561 4.71076 4.73699 4.85450 4.87692 4.94779 5.06498 5.08884 5.22954 5.39509 5.52805 5.57679 5.67242 5.78675 5.81002 6.09952 6.20203 6.51882 6.88700 6.97026 7.40201 8.87662 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.005076 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.582073 B = 5515.346954 C = 5836.944059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.266 3.734 3 H 0.031 0.969 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.619 5.619 13 C 0.098 3.902 14 C 0.219 3.781 15 C -0.229 4.229 16 C -0.051 4.051 17 C -0.191 4.191 18 C 0.035 3.965 19 Cl -0.215 7.215 20 C -0.045 4.045 21 C -0.220 4.220 22 H 0.026 0.974 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.264 0.736 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -0.552 14.326 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.164 3.836 3 H 0.048 0.952 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.555 5.555 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.325 5.325 13 C -0.045 4.045 14 C 0.113 3.887 15 C -0.252 4.252 16 C -0.070 4.070 17 C -0.193 4.193 18 C -0.027 4.027 19 Cl -0.189 7.189 20 C -0.064 4.064 21 C -0.243 4.243 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.165 0.835 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.863 -0.566 13.999 14.533 hybrid contribution 0.045 -0.266 -1.502 1.526 sum 3.907 -0.833 12.497 13.120 Atomic orbital electron populations 1.21855 0.98226 0.99774 0.98832 1.18621 0.90774 0.92741 0.81473 0.95162 1.21621 1.35837 1.08661 0.91613 0.92695 1.25619 0.95110 0.95510 1.01681 1.70034 1.43773 1.17081 1.24650 0.85577 0.78540 0.78519 0.79208 1.19821 1.20995 1.19696 1.47126 1.56242 1.08856 1.20294 1.21546 1.00289 0.80968 1.01683 1.18379 0.89726 0.91568 0.89053 1.20851 1.07823 0.95065 1.01465 1.20873 0.94484 0.99455 0.92156 1.19527 1.06518 0.96036 0.97245 1.23153 0.77829 1.02642 0.99094 1.98726 1.24221 1.98423 1.97482 1.20971 0.94066 0.92942 0.98421 1.20802 1.08212 1.01420 0.93850 0.95490 0.92936 0.94389 0.92643 0.93227 0.92135 0.90864 0.88109 0.85263 0.87162 0.86200 0.83541 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.97 71.98 0.65 -5.36 16 2 C 0.27 13.17 2.45 44.25 0.11 13.28 16 3 H 0.03 1.68 5.29 -2.39 -0.01 1.66 16 4 C -0.54 -28.79 8.00 25.60 0.20 -28.59 16 5 H 0.05 2.93 6.81 -2.91 -0.02 2.91 16 6 C 0.02 1.12 5.29 84.65 0.45 1.57 16 7 N -0.92 -51.52 11.99 21.45 0.26 -51.26 16 8 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.62 -26.09 2.89 -702.27 -2.03 -28.12 16 13 C 0.10 3.43 9.32 127.77 1.19 4.62 16 14 C 0.22 8.52 6.54 38.22 0.25 8.77 16 15 C -0.23 -9.02 9.31 22.40 0.21 -8.81 16 16 C -0.05 -1.59 9.69 22.25 0.22 -1.38 16 17 C -0.19 -4.99 5.26 -19.84 -0.10 -5.10 16 18 C 0.03 0.66 6.78 71.24 0.48 1.14 16 19 Cl -0.21 -5.05 29.13 -2.72 -0.08 -5.13 16 20 C -0.05 -1.18 9.69 22.25 0.22 -0.96 16 21 C -0.22 -6.87 9.16 22.40 0.21 -6.67 16 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 2.69 6.85 -2.39 -0.02 2.67 16 24 H 0.04 1.69 7.94 -2.39 -0.02 1.67 16 25 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 2.28 6.57 -2.38 -0.02 2.26 16 28 H 0.07 2.18 6.45 -2.39 -0.02 2.16 16 29 H 0.10 4.54 5.74 -2.92 -0.02 4.52 16 30 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 31 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 32 H 0.12 1.66 8.08 -2.39 -0.02 1.64 16 33 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.13 3.64 6.31 -2.91 -0.02 3.62 16 Total: -1.00 -59.64 294.17 5.34 -54.30 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.09 Total: 12.88 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.07 Total: -27.50 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.77 Total: -79.38 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -5.05 SS G_CDS: -0.08 Total: -5.13 kcal Total: -59.64 5.34 -54.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.421 kcal (2) G-P(sol) polarization free energy of solvation -59.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds