Wall clock time and date at job start Mon Mar 30 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46556 * 2 1 4 4 C 1.50700 * 109.47281 * 240.00100 * 2 1 3 5 5 H 1.07991 * 120.00075 * 239.99684 * 4 2 1 6 6 C 1.37882 * 119.99649 * 59.99669 * 4 2 1 7 7 N 1.31512 * 120.00436 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99752 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47019 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47276 * 120.00011 * 8 6 4 11 11 H 1.48501 * 109.47340 * 240.00096 * 8 6 4 12 12 N 1.46898 * 109.47070 * 119.99712 * 2 1 3 13 13 C 1.46895 * 111.00166 * 299.27568 * 12 2 1 14 14 C 1.39676 * 110.99721 * 175.32208 * 12 2 1 15 15 C 1.38931 * 120.07580 * 60.68900 * 14 12 2 16 16 C 1.38084 * 119.92716 * 180.22906 * 15 14 12 17 17 C 1.38308 * 120.07134 * 359.77064 * 16 15 14 18 18 C 1.38265 * 120.15211 * 359.97438 * 17 16 15 19 19 C 1.38121 * 120.07522 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.04124 * 179.97438 * 19 18 17 21 21 Cl 1.80300 * 109.47336 * 89.99944 * 20 19 18 22 22 H 1.09003 * 109.47162 * 305.97038 * 1 2 3 23 23 H 1.08998 * 109.46916 * 65.96907 * 1 2 3 24 24 H 1.08995 * 109.46760 * 185.97236 * 1 2 3 25 25 H 0.97001 * 120.00118 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.47516 * 296.04208 * 13 12 2 27 27 H 1.08995 * 109.47122 * 56.05137 * 13 12 2 28 28 H 1.09003 * 109.47088 * 176.04587 * 13 12 2 29 29 H 1.08002 * 120.03516 * 359.97438 * 15 14 12 30 30 H 1.07994 * 119.96727 * 179.79360 * 16 15 14 31 31 H 1.08002 * 119.92723 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.96238 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.46899 * 329.99892 * 20 19 18 34 34 H 1.09000 * 109.47240 * 210.00489 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8166 12 7 2.0197 -0.6924 1.1995 13 6 1.5629 -0.0164 2.4210 14 6 3.4119 -0.8039 1.1798 15 6 4.2014 0.3389 1.1497 16 6 5.5774 0.2251 1.1255 17 6 6.1697 -1.0247 1.1360 18 6 5.3870 -2.1639 1.1712 19 6 4.0101 -2.0573 1.1955 20 6 3.1578 -3.2995 1.2333 21 17 2.8501 -3.7654 2.9477 22 1 -0.3633 0.6036 0.8317 23 1 -0.3633 0.4185 -0.9386 24 1 -0.3633 -1.0221 0.1069 25 1 0.7088 1.1614 -3.4844 26 1 1.9943 0.9836 2.4658 27 1 0.4755 0.0571 2.4106 28 1 1.8801 -0.5882 3.2930 29 1 3.7395 1.3151 1.1411 30 1 6.1917 1.1129 1.0988 31 1 7.2461 -1.1110 1.1166 32 1 5.8528 -3.1383 1.1797 33 1 3.6763 -4.1115 0.7236 34 1 2.2088 -3.1043 0.7339 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:03 Heat of formation + Delta-G solvation = 20.008623 kcal Electronic energy + Delta-G solvation = -17122.488971 eV Core-core repulsion = 14467.066620 eV Total energy + Delta-G solvation = -2655.422352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.45980 -36.29898 -35.42992 -32.90332 -31.86631 -29.96138 -28.45345 -26.36415 -25.40780 -24.25145 -22.02609 -20.60575 -19.41015 -16.68067 -16.16640 -15.21576 -15.06027 -14.61981 -14.06260 -13.66967 -13.43797 -13.26055 -12.90927 -12.69858 -12.22442 -11.97313 -11.67338 -11.34934 -11.15191 -10.98929 -10.70241 -10.65076 -10.34518 -10.29825 -9.99932 -9.94223 -9.84005 -8.99433 -8.50482 -8.33101 -7.94199 -7.44778 -6.06985 -4.11512 1.64495 1.91424 3.00923 3.26028 3.34332 3.38297 4.33474 4.36204 4.81811 5.15064 5.25935 5.26790 5.48109 5.57093 5.76082 5.95331 5.97580 6.08128 6.19755 6.28152 6.42368 6.51996 6.75603 6.84717 6.91541 6.97120 7.00524 7.12188 7.36491 7.39783 7.72195 7.76477 8.21254 8.25425 8.48684 8.94421 9.53740 10.99459 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.008829 C = 0.008237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.560915 B = 3170.759066 C = 3398.441811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.216 3.784 3 H 0.004 0.996 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.512 5.512 13 C 0.032 3.968 14 C 0.170 3.830 15 C -0.146 4.146 16 C -0.104 4.104 17 C -0.144 4.144 18 C -0.101 4.101 19 C -0.096 4.096 20 C 0.031 3.969 21 Cl -0.201 7.201 22 H 0.009 0.991 23 H 0.090 0.910 24 H 0.035 0.965 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 -3.811 7.557 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.112 3.888 3 H 0.021 0.979 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.234 5.234 13 C -0.115 4.115 14 C 0.075 3.925 15 C -0.167 4.167 16 C -0.123 4.123 17 C -0.163 4.163 18 C -0.119 4.119 19 C -0.097 4.097 20 C -0.032 4.032 21 Cl -0.174 7.174 22 H 0.028 0.972 23 H 0.108 0.892 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.457 -4.204 7.532 10.207 hybrid contribution 0.646 0.517 -0.973 1.278 sum 6.104 -3.686 6.559 9.688 Atomic orbital electron populations 1.21856 0.97303 0.98999 1.01114 1.19385 0.92447 0.92005 0.84993 0.97852 1.21119 1.30750 1.12415 0.89656 0.91982 1.24879 0.95118 0.95020 0.98954 1.69882 1.36849 1.22950 1.23389 0.86515 0.78637 0.79748 0.83031 1.19690 1.20986 1.21127 1.59920 1.05734 1.53750 1.03996 1.22337 1.01071 0.95845 0.92297 1.18536 0.89694 0.91443 0.92830 1.21624 0.94176 0.99132 1.01721 1.20951 0.94622 0.97147 0.99619 1.20892 0.99085 0.92559 1.03720 1.20839 0.92776 0.98311 1.00011 1.19533 0.93020 0.93533 1.03621 1.23049 1.03249 0.95170 0.81692 1.98679 1.97035 1.93354 1.28367 0.97160 0.89199 0.94611 0.92977 0.96430 0.91085 0.92537 0.86550 0.86852 0.86740 0.86521 0.89608 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.65 37.16 0.32 -2.83 16 2 C 0.22 5.19 1.76 -68.86 -0.12 5.07 16 3 H 0.00 0.10 7.33 -51.93 -0.38 -0.28 16 4 C -0.50 -13.15 8.04 -34.44 -0.28 -13.42 16 5 H 0.06 1.64 6.87 -52.49 -0.36 1.28 16 6 C 0.06 1.66 5.29 -17.82 -0.09 1.56 16 7 N -0.89 -24.74 11.29 55.43 0.63 -24.11 16 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 N -0.51 -10.57 3.55 -172.68 -0.61 -11.18 16 13 C 0.03 0.57 9.11 60.06 0.55 1.12 16 14 C 0.17 3.36 3.43 -83.78 -0.29 3.07 16 15 C -0.15 -2.78 8.62 -39.38 -0.34 -3.12 16 16 C -0.10 -1.71 10.04 -39.61 -0.40 -2.11 16 17 C -0.14 -2.20 10.04 -39.55 -0.40 -2.60 16 18 C -0.10 -1.60 9.70 -39.61 -0.38 -1.99 16 19 C -0.10 -1.72 4.85 -104.42 -0.51 -2.23 16 20 C 0.03 0.51 6.54 36.00 0.24 0.74 16 21 Cl -0.20 -3.19 29.13 -51.86 -1.51 -4.70 16 22 H 0.01 0.20 6.66 -51.93 -0.35 -0.14 16 23 H 0.09 2.33 5.93 -51.93 -0.31 2.02 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.02 0.31 7.30 -51.93 -0.38 -0.07 16 27 H 0.07 1.25 6.25 -51.93 -0.32 0.92 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.12 2.24 7.06 -52.49 -0.37 1.87 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 34 H 0.12 2.26 7.45 -51.93 -0.39 1.87 16 LS Contribution 292.61 15.07 4.41 4.41 Total: -1.00 -27.45 292.61 -8.34 -35.79 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.53 Total: 0.50 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.70 Total: -16.74 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.01 Total: -35.30 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -1.51 Total: -4.70 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.45 -8.34 -35.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.798 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds