Wall clock time and date at job start Mon Mar 30 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47178 * 300.00045 * 3 2 1 6 6 H 1.48498 * 109.47163 * 60.00307 * 3 2 1 7 7 C 1.37885 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.46953 * 179.97438 * 13 12 11 15 15 C 1.34953 * 126.03323 * 125.00288 * 14 13 12 16 16 C 1.35319 * 107.74472 * 179.97438 * 15 14 13 17 17 N 1.48022 * 126.04224 * 179.97438 * 16 15 14 18 18 O 1.21804 * 119.99400 * 359.97438 * 17 16 15 19 19 O 1.21794 * 120.00333 * 179.97438 * 17 16 15 20 20 C 1.39874 * 107.92006 * 359.97438 * 16 15 14 21 21 N 1.30836 * 108.20162 * 359.73930 * 20 16 15 22 22 H 0.97007 * 119.99787 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 24 24 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 25 25 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 28 28 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 29 29 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 30 30 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 31 31 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 32 32 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 33 33 H 1.07995 * 126.12995 * 359.97438 * 15 14 13 34 34 H 1.08000 * 125.89685 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 6 1.7093 -7.4751 -0.0018 14 7 2.6613 -8.5885 -0.0018 15 6 2.7008 -9.5993 0.8916 16 6 3.7207 -10.4177 0.5436 17 7 4.1256 -11.6536 1.2504 18 8 3.5190 -12.0138 2.2433 19 8 5.0651 -12.3105 0.8390 20 6 4.3249 -9.8893 -0.6019 21 7 3.6869 -8.7961 -0.9332 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8895 25 1 2.8718 -3.6044 0.8895 26 1 2.8719 -3.6044 -0.8905 27 1 0.8538 -5.0445 -0.8914 28 1 0.8532 -5.0451 0.8885 29 1 3.1017 -6.0922 -0.8901 30 1 3.1004 -6.0924 0.8899 31 1 1.0817 -7.5331 0.8874 32 1 1.0837 -7.5324 -0.8925 33 1 2.0373 -9.7313 1.7333 34 1 5.1695 -10.3129 -1.1250 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067799730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:20 Heat of formation + Delta-G solvation = 46.373814 kcal Electronic energy + Delta-G solvation = -17238.128301 eV Core-core repulsion = 14175.432817 eV Total energy + Delta-G solvation = -3062.695485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.65195 -41.56622 -36.65022 -36.41967 -34.12258 -32.54181 -31.61294 -30.29272 -27.35808 -25.86169 -24.22104 -22.16626 -21.90558 -21.13310 -20.25592 -19.21435 -18.62070 -17.71177 -16.92002 -16.33375 -16.06842 -15.27629 -15.07417 -14.53343 -13.91463 -13.57577 -13.20171 -12.72072 -12.26749 -11.90897 -11.81644 -11.72624 -11.58281 -11.28702 -11.21989 -11.04595 -10.69658 -10.63686 -10.55964 -10.37138 -9.85594 -9.79951 -9.37390 -9.10680 -8.42018 -6.06973 -4.09397 0.03697 0.99504 1.10358 1.90593 1.97060 3.26039 3.33830 3.37858 3.64567 3.92662 4.21159 4.39619 4.53631 4.57547 4.69915 4.85610 5.25388 5.28183 5.29729 5.43632 5.70881 5.92546 5.95552 6.09866 6.21559 6.29525 6.59788 6.67100 6.75520 7.02371 7.52943 7.59513 7.72838 7.92793 8.35707 8.98071 9.55282 11.04385 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.058158 B = 0.002699 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.333610 B =10369.970319 C =10486.479397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.116 4.116 12 C -0.132 4.132 13 C 0.122 3.878 14 N -0.337 5.337 15 C 0.153 3.847 16 C -0.200 4.200 17 N 0.072 4.928 18 O -0.179 6.179 19 O -0.168 6.168 20 C 0.109 3.891 21 N -0.261 5.261 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.205 0.795 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -19.801 0.587 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.170 4.170 13 C 0.003 3.997 14 N -0.114 5.114 15 C -0.003 4.003 16 C -0.298 4.298 17 N 0.587 4.413 18 O -0.390 6.390 19 O -0.381 6.381 20 C -0.080 4.080 21 N -0.081 5.081 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.221 0.779 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.158 -17.980 -0.585 18.265 hybrid contribution 0.536 -0.005 0.774 0.942 sum 3.694 -17.985 0.189 18.362 Atomic orbital electron populations 1.69965 1.06076 1.26549 1.50954 1.25033 0.94861 0.99327 0.95288 0.86546 0.80135 0.83759 0.77637 1.19734 1.20962 1.20966 1.21304 0.93078 0.91139 1.50478 0.92691 1.19105 0.93997 0.91431 0.97161 1.21617 0.99120 0.93568 1.00437 1.21622 0.97504 0.94207 1.02046 1.21995 0.99423 0.91672 1.03885 1.22438 0.88870 0.82987 1.05400 1.49216 1.24614 1.18932 1.18686 1.22437 0.96190 0.86843 0.94827 1.21071 1.08240 0.95760 1.04732 1.42468 0.99092 1.00306 0.99420 1.94548 1.54918 1.74090 1.15395 1.94545 1.19957 1.53350 1.70276 1.24003 0.99317 0.91712 0.92984 1.77813 1.00580 1.17126 1.12570 0.93022 0.96626 0.96662 0.93393 0.93274 0.91865 0.92012 0.90234 0.91316 0.87264 0.88033 0.77853 0.77460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 10 C -0.11 -2.07 5.15 -26.73 -0.14 -2.21 16 11 C -0.12 -1.59 5.21 -26.73 -0.14 -1.73 16 12 C -0.13 -1.42 5.41 -26.73 -0.14 -1.56 16 13 C 0.12 0.94 6.51 -4.05 -0.03 0.91 16 14 N -0.34 -3.01 3.68 -61.37 -0.23 -3.23 16 15 C 0.15 1.22 11.13 -17.22 -0.19 1.02 16 16 C -0.20 -1.98 7.11 -80.37 -0.57 -2.55 16 17 N 0.07 0.85 4.45 33.75 0.15 1.00 16 18 O -0.18 -2.23 19.02 -29.46 -0.56 -2.79 16 19 O -0.17 -2.12 19.05 -29.46 -0.56 -2.68 16 20 C 0.11 1.02 11.75 -17.36 -0.20 0.81 16 21 N -0.26 -2.77 12.42 30.63 0.38 -2.39 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.11 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -32.30 308.09 -7.03 -39.33 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -4.61 Total: -6.16 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.96 Total: -18.29 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 1.04 Total: -30.39 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -1.12 Total: -5.47 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.30 -7.03 -39.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067799730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.703 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds