Wall clock time and date at job start Mon Mar 30 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46764 * 2 1 4 4 C 1.50696 * 109.47513 * 239.99583 * 2 1 3 5 5 H 1.07997 * 120.00158 * 240.00349 * 4 2 1 6 6 C 1.37881 * 119.99905 * 59.99852 * 4 2 1 7 7 N 1.31509 * 119.99967 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99886 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47602 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47449 * 120.00152 * 8 6 4 11 11 H 1.48507 * 109.47163 * 239.99643 * 8 6 4 12 12 N 1.46905 * 109.47136 * 119.99311 * 2 1 3 13 13 C 1.46902 * 110.99800 * 275.00438 * 12 2 1 14 14 C 1.53006 * 109.46626 * 180.02562 * 13 12 2 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 16 16 C 1.38268 * 119.99242 * 269.72214 * 15 14 13 17 17 C 1.38219 * 120.02212 * 179.76483 * 16 15 14 18 18 C 1.38237 * 120.01711 * 0.51470 * 17 16 15 19 19 C 1.38328 * 119.98606 * 359.74132 * 18 17 16 20 20 Cl 1.73601 * 120.01694 * 180.02562 * 19 18 17 21 21 C 1.38197 * 119.99549 * 89.99916 * 15 14 13 22 22 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47712 * 300.00099 * 1 2 3 24 24 H 1.09001 * 109.47216 * 60.00583 * 1 2 3 25 25 H 0.97002 * 120.00123 * 179.97438 * 7 6 4 26 26 H 1.00904 * 110.99696 * 151.04867 * 12 2 1 27 27 H 1.08993 * 109.47737 * 60.00169 * 13 12 2 28 28 H 1.09000 * 109.47263 * 299.99731 * 13 12 2 29 29 H 1.09000 * 109.47050 * 299.99824 * 14 13 12 30 30 H 1.09001 * 109.46801 * 59.99937 * 14 13 12 31 31 H 1.07994 * 119.98512 * 0.02562 * 16 15 14 32 32 H 1.08008 * 119.99311 * 180.25348 * 17 16 15 33 33 H 1.08004 * 120.00910 * 179.72119 * 18 17 16 34 34 H 1.08005 * 120.00196 * 359.95789 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3215 -1.1206 -4.0077 9 1 3.1467 -2.2872 -3.6036 10 1 1.1663 -1.5870 -4.8159 11 1 3.1467 -0.1876 -4.8164 12 7 2.0197 -0.6924 1.1996 13 6 2.0823 0.2229 2.3469 14 6 2.5961 -0.5325 3.5743 15 6 2.6611 0.4065 4.7512 16 6 3.8174 1.1220 5.0015 17 6 3.8759 1.9871 6.0779 18 6 2.7821 2.1294 6.9111 19 6 1.6268 1.4098 6.6642 20 17 0.2523 1.5884 7.7096 21 6 1.5668 0.5479 5.5833 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 0.7087 1.1610 -3.4845 26 1 2.9173 -1.1204 1.0289 27 1 1.0870 0.6166 2.5525 28 1 2.7587 1.0465 2.1182 29 1 1.9201 -1.3564 3.8032 30 1 3.5916 -0.9258 3.3683 31 1 4.6736 1.0081 4.3533 32 1 4.7781 2.5489 6.2706 33 1 2.8295 2.8020 7.7547 34 1 0.6650 -0.0140 5.3898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068607724.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:08 Heat of formation + Delta-G solvation = -14.188293 kcal Electronic energy + Delta-G solvation = -15653.526115 eV Core-core repulsion = 12996.620874 eV Total energy + Delta-G solvation = -2656.905241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41231 -37.99262 -37.39439 -35.19921 -33.50381 -31.68736 -30.78093 -28.14665 -27.22888 -24.07593 -23.60631 -21.91435 -21.72662 -18.54035 -17.86236 -16.97612 -16.67652 -16.41296 -15.91272 -15.54532 -15.03265 -14.61251 -14.49886 -14.19002 -13.88728 -13.64519 -13.04891 -12.88733 -12.68264 -12.62101 -12.42962 -12.33207 -12.22465 -12.16787 -11.91932 -11.80364 -11.59651 -10.88456 -10.58268 -9.84975 -9.61502 -9.07481 -8.13426 -6.28041 0.19342 0.30843 1.14768 1.42240 1.44120 1.56005 2.41861 2.65206 3.15288 3.51685 3.88243 3.97649 4.10183 4.24327 4.38229 4.39060 4.50813 4.63776 4.70789 4.82586 4.98599 5.05098 5.06547 5.17190 5.22301 5.26978 5.39160 5.47384 5.61356 5.67423 5.84305 5.88404 6.21473 6.46297 6.77286 7.01205 7.42773 8.92645 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.039866 B = 0.003695 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.180820 B = 7576.438197 C = 7934.830032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.032 1.032 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.686 5.686 13 C 0.072 3.928 14 C -0.067 4.067 15 C -0.072 4.072 16 C -0.119 4.119 17 C -0.103 4.103 18 C -0.121 4.121 19 C -0.045 4.045 20 Cl -0.076 7.076 21 C -0.121 4.121 22 H 0.029 0.971 23 H 0.019 0.981 24 H 0.056 0.944 25 H 0.262 0.738 26 H 0.335 0.665 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.186 1.587 18.822 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H -0.015 1.015 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.317 5.317 13 C -0.058 4.058 14 C -0.104 4.104 15 C -0.073 4.073 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.139 4.139 19 C -0.071 4.071 20 Cl -0.047 7.047 21 C -0.139 4.139 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.168 0.832 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.352 1.466 18.950 19.499 hybrid contribution 0.478 0.389 -1.141 1.297 sum 4.830 1.855 17.809 18.545 Atomic orbital electron populations 1.21543 0.97893 0.98872 0.98881 1.18929 0.92689 0.90788 0.87118 1.01470 1.21633 1.31674 1.12733 0.91501 0.91940 1.25771 0.95146 0.95673 1.02185 1.70039 1.37520 1.24199 1.24133 0.85405 0.78093 0.78618 0.78883 1.18828 1.20683 1.20633 1.60634 1.32385 1.33379 1.05348 1.21844 0.99235 0.93771 0.90913 1.20501 1.02968 0.96554 0.90411 1.19910 0.93667 0.97869 0.95833 1.21473 0.98012 0.96119 0.98137 1.21444 0.99005 0.97844 0.93802 1.21325 0.91542 0.99733 1.01337 1.21065 0.90171 1.01135 0.94736 1.98361 1.43452 1.96920 1.65969 1.21085 0.99515 0.99134 0.94203 0.95206 0.96241 0.92516 0.92849 0.84705 0.93013 0.96883 0.90058 0.89631 0.84126 0.82239 0.83179 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.81 9.19 71.98 0.66 -5.14 16 2 C 0.21 11.03 2.60 44.17 0.11 11.14 16 3 H -0.03 -1.85 7.80 -2.38 -0.02 -1.87 16 4 C -0.54 -29.54 8.59 25.60 0.22 -29.32 16 5 H 0.06 3.33 7.62 -2.91 -0.02 3.31 16 6 C 0.01 0.63 5.30 84.66 0.45 1.07 16 7 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 8 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 N -0.69 -28.86 6.30 -495.44 -3.12 -31.98 16 13 C 0.07 2.53 5.47 86.31 0.47 3.01 16 14 C -0.07 -1.77 5.61 29.85 0.17 -1.61 16 15 C -0.07 -1.75 5.13 -19.87 -0.10 -1.85 16 16 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 17 C -0.10 -1.78 10.05 22.26 0.22 -1.56 16 18 C -0.12 -2.25 9.83 22.29 0.22 -2.03 16 19 C -0.04 -0.99 6.32 22.32 0.14 -0.85 16 20 Cl -0.08 -1.61 28.96 -2.72 -0.08 -1.68 16 21 C -0.12 -2.94 9.49 22.29 0.21 -2.73 16 22 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.02 0.88 7.45 -2.39 -0.02 0.86 16 24 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.34 13.41 8.22 -89.69 -0.74 12.68 16 27 H 0.05 1.94 7.44 -2.39 -0.02 1.92 16 28 H 0.01 0.48 8.06 -2.39 -0.02 0.46 16 29 H 0.08 2.16 8.09 -2.39 -0.02 2.14 16 30 H 0.09 2.04 8.08 -2.39 -0.02 2.02 16 31 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -60.85 302.22 2.41 -58.43 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.35 Total: 15.17 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 2.99 Total: -32.12 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.88 Total: -85.10 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.68 kcal Total: -60.85 2.41 -58.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068607724.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.246 kcal (2) G-P(sol) polarization free energy of solvation -60.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds