Wall clock time and date at job start Mon Mar 30 2020 07:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33391 * 125.19872 * 2 1 4 4 C 1.38426 * 114.91684 * 179.75231 * 3 2 1 5 5 C 1.33394 * 114.92284 * 0.42665 * 4 3 2 6 6 C 1.50697 * 125.20360 * 179.85942 * 5 4 3 7 7 C 1.53004 * 109.47085 * 89.72258 * 6 5 4 8 8 H 1.08999 * 109.46957 * 54.99866 * 7 6 5 9 9 C 1.53003 * 109.46879 * 175.00033 * 7 6 5 10 10 N 1.46903 * 109.46774 * 295.00083 * 7 6 5 11 11 C 1.46898 * 110.99673 * 155.00102 * 10 7 6 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99944 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46926 * 60.00512 * 17 15 13 19 19 H 1.48506 * 109.46961 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47227 * 300.00303 * 17 15 13 21 21 S 1.75879 * 109.59051 * 359.59731 * 5 4 3 22 22 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47064 * 299.99914 * 1 2 3 24 24 H 1.08994 * 109.47357 * 59.99904 * 1 2 3 25 25 H 1.07996 * 122.54361 * 359.97438 * 3 2 1 26 26 H 1.08005 * 122.54356 * 180.27156 * 4 3 2 27 27 H 1.09007 * 109.47473 * 329.72057 * 6 5 4 28 28 H 1.08998 * 109.47022 * 209.72628 * 6 5 4 29 29 H 1.08994 * 109.47006 * 299.99787 * 9 7 6 30 30 H 1.08998 * 109.47007 * 59.99869 * 9 7 6 31 31 H 1.08996 * 109.46579 * 179.97438 * 9 7 6 32 32 H 1.00895 * 111.00497 * 31.04024 * 10 7 6 33 33 H 1.09001 * 109.47062 * 59.99745 * 11 10 7 34 34 H 1.08993 * 109.47084 * 299.99192 * 11 10 7 35 35 H 1.09001 * 109.46801 * 300.00064 * 12 11 10 36 36 H 1.09001 * 109.46998 * 59.99660 * 12 11 10 37 37 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0054 5 6 3.9751 -0.4477 0.0008 6 6 5.3861 -0.9769 0.0021 7 6 5.8624 -1.1556 1.4451 8 1 5.1594 -1.7909 1.9837 9 6 7.2460 -1.8089 1.4481 10 7 5.9388 0.1564 2.1014 11 6 5.8040 0.0248 3.5583 12 6 5.8890 1.4087 4.2054 13 6 5.7500 1.2738 5.6999 14 1 5.6150 0.2985 6.1438 15 6 5.7963 2.3953 6.5006 16 7 5.9612 3.5828 5.9600 17 14 5.6248 2.2280 8.3531 18 1 6.7174 1.3687 8.8758 19 1 5.7084 3.5710 8.9812 20 1 4.3129 1.6112 8.6750 21 16 2.5210 -1.4371 0.0006 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8668 2.0895 -0.0004 26 1 4.3720 1.6351 0.0104 27 1 6.0393 -0.2714 -0.5115 28 1 5.4141 -1.9380 -0.5115 29 1 7.1892 -2.7823 0.9611 30 1 7.9489 -1.1735 0.9094 31 1 7.5855 -1.9357 2.4761 32 1 5.2452 0.7878 1.7296 33 1 6.6064 -0.6053 3.9420 34 1 4.8414 -0.4285 3.7945 35 1 6.8518 1.8617 3.9690 36 1 5.0869 2.0391 3.8216 37 1 5.9934 4.3718 6.5233 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070633839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:35 Heat of formation + Delta-G solvation = 5.713958 kcal Electronic energy + Delta-G solvation = -16210.525962 eV Core-core repulsion = 13692.360548 eV Total energy + Delta-G solvation = -2518.165414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.47248 -36.70073 -33.67547 -32.34755 -31.16858 -28.50529 -27.96830 -24.74952 -23.96184 -22.64713 -20.51674 -20.24517 -18.74798 -16.81425 -16.25535 -15.59753 -15.21235 -14.63107 -14.35561 -13.92539 -13.69208 -13.20162 -13.02125 -12.81200 -12.44782 -12.20950 -12.10550 -11.91282 -11.49825 -11.46277 -11.24457 -10.99901 -10.91909 -10.70494 -10.60965 -10.49831 -9.89391 -9.31866 -9.11694 -8.41912 -8.35330 -8.31582 -7.74499 -5.96327 -3.98611 1.03165 1.64294 2.02274 2.81499 3.35483 3.39474 3.42145 4.46163 4.73209 4.78280 4.87661 5.13145 5.16563 5.33528 5.39479 5.41140 5.52630 5.62538 5.74264 5.77853 5.86425 5.93870 6.02028 6.23293 6.25076 6.36469 6.40096 6.46366 6.57165 6.60632 7.05299 7.55668 7.78576 7.87932 8.03842 8.13846 8.48207 9.08338 9.64766 11.15159 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.005120 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.692380 B = 5466.990893 C = 6312.559625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.185 4.185 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.173 4.173 6 C -0.051 4.051 7 C 0.085 3.915 8 H 0.039 0.961 9 C -0.137 4.137 10 N -0.688 5.688 11 C 0.067 3.933 12 C 0.027 3.973 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 S 0.082 5.918 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.338 0.662 33 H 0.057 0.943 34 H 0.013 0.987 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -9.111 -14.940 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.302 4.302 3 C -0.164 4.164 4 C -0.163 4.163 5 C -0.290 4.290 6 C -0.091 4.091 7 C -0.026 4.026 8 H 0.057 0.943 9 C -0.195 4.195 10 N -0.321 5.321 11 C -0.061 4.061 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 S 0.346 5.654 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.156 0.844 26 H 0.162 0.838 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.030 0.970 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.613 -10.466 -14.881 19.358 hybrid contribution -0.793 1.365 1.242 2.009 sum -7.406 -9.101 -13.639 17.991 Atomic orbital electron populations 1.20300 0.88071 1.02594 1.02886 1.24412 0.99738 0.95606 1.10421 1.20072 0.92994 0.99296 1.04032 1.20183 0.96387 0.96098 1.03672 1.24484 0.98502 0.96404 1.09639 1.20424 0.89230 1.01491 0.97953 1.21501 0.96417 0.92222 0.92441 0.94323 1.21769 0.96567 0.98882 1.02311 1.60742 1.55825 1.09348 1.06178 1.22173 0.97821 1.01322 0.84833 1.19048 0.97677 0.90043 0.94309 1.21145 1.49834 0.92996 0.91979 0.92882 1.24991 0.95333 0.95345 0.98625 1.69966 1.50107 0.97906 1.35330 0.86661 0.78625 0.77102 0.85622 1.20224 1.21259 1.20326 1.84093 0.97061 1.10076 1.74155 0.91728 0.90540 0.90771 0.84362 0.83830 0.89115 0.90598 0.93258 0.92012 0.92285 0.84270 0.92411 0.96891 0.95702 0.96965 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.38 36.00 0.37 -0.37 16 2 C -0.18 -2.27 6.51 -36.00 -0.23 -2.51 16 3 C -0.13 -1.74 10.05 -41.21 -0.41 -2.15 16 4 C -0.13 -1.83 8.54 -41.21 -0.35 -2.19 16 5 C -0.17 -2.33 5.40 -36.00 -0.19 -2.53 16 6 C -0.05 -0.65 5.31 -27.88 -0.15 -0.79 16 7 C 0.09 1.29 2.64 -67.71 -0.18 1.11 16 8 H 0.04 0.63 7.80 -51.93 -0.40 0.22 16 9 C -0.14 -1.86 9.42 37.16 0.35 -1.51 16 10 N -0.69 -12.80 6.31 -106.72 -0.67 -13.47 16 11 C 0.07 1.48 5.42 -3.82 -0.02 1.46 16 12 C 0.03 0.72 5.23 -27.88 -0.15 0.57 16 13 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 S 0.08 1.03 23.31 -107.50 -2.51 -1.47 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.14 1.90 7.67 -52.48 -0.40 1.50 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.87 7.45 -51.93 -0.39 0.49 16 32 H 0.34 6.22 5.82 -39.29 -0.23 5.99 16 33 H 0.06 1.27 7.44 -51.93 -0.39 0.89 16 34 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -30.97 318.86 -10.03 -41.00 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.00 Total: 1.51 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.38 Total: -22.78 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.06 Total: -40.09 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.97 -10.03 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070633839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.717 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds