Wall clock time and date at job start Mon Mar 30 2020 07:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33391 * 125.19872 * 2 1 4 4 C 1.38426 * 114.91684 * 179.75231 * 3 2 1 5 5 C 1.33394 * 114.92284 * 0.42665 * 4 3 2 6 6 C 1.50697 * 125.20360 * 179.85942 * 5 4 3 7 7 C 1.53004 * 109.47085 * 89.72258 * 6 5 4 8 8 H 1.08999 * 109.46957 * 54.99866 * 7 6 5 9 9 C 1.53003 * 109.46879 * 175.00033 * 7 6 5 10 10 N 1.46903 * 109.46774 * 295.00083 * 7 6 5 11 11 C 1.46898 * 110.99673 * 155.00102 * 10 7 6 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99944 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46926 * 60.00512 * 17 15 13 19 19 H 1.48506 * 109.46961 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47227 * 300.00303 * 17 15 13 21 21 S 1.75879 * 109.59051 * 359.59731 * 5 4 3 22 22 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47064 * 299.99914 * 1 2 3 24 24 H 1.08994 * 109.47357 * 59.99904 * 1 2 3 25 25 H 1.07996 * 122.54361 * 359.97438 * 3 2 1 26 26 H 1.08005 * 122.54356 * 180.27156 * 4 3 2 27 27 H 1.09007 * 109.47473 * 329.72057 * 6 5 4 28 28 H 1.08998 * 109.47022 * 209.72628 * 6 5 4 29 29 H 1.08994 * 109.47006 * 299.99787 * 9 7 6 30 30 H 1.08998 * 109.47007 * 59.99869 * 9 7 6 31 31 H 1.08996 * 109.46579 * 179.97438 * 9 7 6 32 32 H 1.00895 * 111.00497 * 31.04024 * 10 7 6 33 33 H 1.09001 * 109.47062 * 59.99745 * 11 10 7 34 34 H 1.08993 * 109.47084 * 299.99192 * 11 10 7 35 35 H 1.09001 * 109.46801 * 300.00064 * 12 11 10 36 36 H 1.09001 * 109.46998 * 59.99660 * 12 11 10 37 37 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0054 5 6 3.9751 -0.4477 0.0008 6 6 5.3861 -0.9769 0.0021 7 6 5.8624 -1.1556 1.4451 8 1 5.1594 -1.7909 1.9837 9 6 7.2460 -1.8089 1.4481 10 7 5.9388 0.1564 2.1014 11 6 5.8040 0.0248 3.5583 12 6 5.8890 1.4087 4.2054 13 6 5.7500 1.2738 5.6999 14 1 5.6150 0.2985 6.1438 15 6 5.7963 2.3953 6.5006 16 7 5.9612 3.5828 5.9600 17 14 5.6248 2.2280 8.3531 18 1 6.7174 1.3687 8.8758 19 1 5.7084 3.5710 8.9812 20 1 4.3129 1.6112 8.6750 21 16 2.5210 -1.4371 0.0006 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8668 2.0895 -0.0004 26 1 4.3720 1.6351 0.0104 27 1 6.0393 -0.2714 -0.5115 28 1 5.4141 -1.9380 -0.5115 29 1 7.1892 -2.7823 0.9611 30 1 7.9489 -1.1735 0.9094 31 1 7.5855 -1.9357 2.4761 32 1 5.2452 0.7878 1.7296 33 1 6.6064 -0.6053 3.9420 34 1 4.8414 -0.4285 3.7945 35 1 6.8518 1.8617 3.9690 36 1 5.0869 2.0391 3.8216 37 1 5.9934 4.3718 6.5233 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070633839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:34 Heat of formation + Delta-G solvation = -12.105137 kcal Electronic energy + Delta-G solvation = -16211.298656 eV Core-core repulsion = 13692.360548 eV Total energy + Delta-G solvation = -2518.938108 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.57770 -37.97182 -35.57985 -33.86777 -32.50688 -30.02631 -29.26502 -26.17555 -25.52101 -23.69084 -22.44251 -21.48480 -19.76768 -18.52349 -17.74268 -17.01805 -16.54272 -16.23028 -15.92937 -15.11032 -14.81170 -14.55943 -14.33485 -13.97442 -13.79012 -13.71220 -13.26925 -13.04499 -12.93452 -12.84860 -12.70032 -12.52560 -12.33552 -12.22763 -12.01753 -11.67183 -11.64557 -11.40232 -11.22338 -10.56972 -9.45281 -9.34613 -9.24672 -8.20954 -6.32873 0.03251 0.67444 1.02636 1.39076 1.42686 1.50661 1.79326 2.39849 3.12086 3.34443 3.75584 3.95843 4.01369 4.31558 4.35675 4.40499 4.50755 4.55988 4.67429 4.71869 4.72764 4.83441 4.90254 4.94869 5.03740 5.07736 5.14188 5.25913 5.36103 5.43264 5.43676 5.61000 5.65789 5.77972 6.14351 6.29259 6.55367 6.83478 7.36274 8.91109 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.005120 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.692380 B = 5466.990893 C = 6312.559625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.186 4.186 3 C -0.155 4.155 4 C -0.147 4.147 5 C -0.189 4.189 6 C -0.044 4.044 7 C 0.084 3.916 8 H 0.031 0.969 9 C -0.134 4.134 10 N -0.691 5.691 11 C 0.086 3.914 12 C 0.035 3.965 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.267 1.267 21 S 0.091 5.909 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.140 0.860 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.337 0.663 33 H 0.059 0.941 34 H 0.008 0.992 35 H -0.004 1.004 36 H -0.013 1.013 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 -10.460 -14.875 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.303 4.303 3 C -0.185 4.185 4 C -0.177 4.177 5 C -0.306 4.306 6 C -0.083 4.083 7 C -0.026 4.026 8 H 0.049 0.951 9 C -0.192 4.192 10 N -0.325 5.325 11 C -0.043 4.043 12 C -0.002 4.002 13 C -0.585 4.585 14 H 0.076 0.924 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.192 1.192 21 S 0.355 5.645 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.166 0.834 26 H 0.158 0.842 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.005 0.995 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.234 -11.833 -14.835 20.308 hybrid contribution -0.624 1.800 1.160 2.230 sum -7.858 -10.034 -13.675 18.693 Atomic orbital electron populations 1.20421 0.85988 1.03640 1.03893 1.24857 1.01251 0.95190 1.08994 1.20270 0.92933 1.00237 1.05053 1.20331 0.96908 0.96393 1.04078 1.24649 0.99310 0.96569 1.10043 1.20387 0.88755 1.02935 0.96233 1.21618 0.97421 0.90044 0.93564 0.95135 1.21756 0.95328 1.00381 1.01701 1.60699 1.55912 1.11638 1.04208 1.21777 0.97507 0.98046 0.86959 1.18883 0.94943 0.92177 0.94227 1.21564 1.50252 0.93505 0.93207 0.92352 1.25968 0.94541 0.94806 1.04237 1.70103 1.50672 0.98806 1.37473 0.85479 0.79168 0.77485 0.78778 1.19071 1.20579 1.19238 1.83992 0.96641 1.10024 1.73889 0.90673 0.90170 0.89007 0.83370 0.84232 0.88631 0.88125 0.90184 0.91856 0.93916 0.84305 0.92280 0.97394 0.98599 0.99504 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.38 71.24 0.74 -0.62 16 2 C -0.19 -4.36 6.51 24.59 0.16 -4.20 16 3 C -0.16 -3.98 10.05 21.22 0.21 -3.77 16 4 C -0.15 -4.04 8.54 21.22 0.18 -3.86 16 5 C -0.19 -4.92 5.40 24.59 0.13 -4.79 16 6 C -0.04 -1.03 5.31 29.85 0.16 -0.87 16 7 C 0.08 2.44 2.64 44.92 0.12 2.56 16 8 H 0.03 0.96 7.80 -2.39 -0.02 0.94 16 9 C -0.13 -3.41 9.42 71.98 0.68 -2.73 16 10 N -0.69 -25.90 6.31 -491.55 -3.10 -29.00 16 11 C 0.09 3.87 5.42 86.31 0.47 4.34 16 12 C 0.04 1.96 5.23 29.85 0.16 2.12 16 13 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.00 0.15 5.46 84.65 0.46 0.62 16 16 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 17 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 S 0.09 2.16 23.31 -56.49 -1.32 0.84 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 26 H 0.14 3.81 7.67 -2.91 -0.02 3.79 16 27 H 0.10 2.17 8.14 -2.38 -0.02 2.16 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.22 7.45 -2.39 -0.02 1.20 16 32 H 0.34 12.67 5.82 -89.70 -0.52 12.15 16 33 H 0.06 2.62 7.44 -2.39 -0.02 2.60 16 34 H 0.01 0.36 8.05 -2.39 -0.02 0.34 16 35 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -66.56 318.86 2.11 -64.45 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.51 Total: 17.45 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 3.70 Total: -43.23 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -2.82 Total: -86.57 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.32 Total: 0.84 kcal Total: -66.56 2.11 -64.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070633839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.350 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds