Wall clock time and date at job start Mon Mar 30 2020 07:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 H 1.09002 * 109.47069 * 304.99691 * 7 6 5 9 9 C 1.53006 * 109.46846 * 185.00257 * 7 6 5 10 10 N 1.46898 * 109.47357 * 65.00030 * 7 6 5 11 11 C 1.46900 * 110.99928 * 204.99982 * 10 7 6 12 12 C 1.52999 * 109.47217 * 180.02562 * 11 10 7 13 13 C 1.50697 * 109.47418 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99951 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00264 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00276 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99867 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47046 * 90.00347 * 17 15 13 19 19 H 1.48501 * 109.47124 * 210.00542 * 17 15 13 20 20 H 1.48498 * 109.47369 * 330.00418 * 17 15 13 21 21 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 22 22 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 23 23 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 24 24 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 25 25 H 1.08001 * 122.54079 * 0.05886 * 3 2 1 26 26 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 28 28 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 29 29 H 1.09001 * 109.47241 * 59.99481 * 9 7 6 30 30 H 1.08996 * 109.46751 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.46824 * 299.99583 * 9 7 6 32 32 H 1.00901 * 110.99566 * 81.04409 * 10 7 6 33 33 H 1.09002 * 109.47105 * 300.00194 * 11 10 7 34 34 H 1.09001 * 109.47267 * 59.99559 * 11 10 7 35 35 H 1.09002 * 109.47054 * 299.99996 * 12 11 10 36 36 H 1.08999 * 109.47041 * 59.99494 * 12 11 10 37 37 H 0.96999 * 120.00250 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 1 5.7540 -0.2147 1.9795 9 6 7.3367 -1.5735 1.4412 10 7 5.0606 -2.1942 2.0984 11 6 5.0480 -2.0064 3.5552 12 6 4.2031 -3.1047 4.2038 13 6 4.1896 -2.9117 5.6983 14 1 4.7301 -2.0882 6.1413 15 6 3.4883 -3.7868 6.5002 16 7 3.4761 -3.6181 7.8044 17 14 2.5542 -5.2116 5.7340 18 1 3.4447 -6.3967 5.6451 19 1 1.3754 -5.5402 6.5753 20 1 2.0998 -4.8306 4.3726 21 16 2.5211 -1.4371 -0.0068 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.8669 2.0895 0.0009 26 1 4.3721 1.6351 -0.0002 27 1 6.0384 -0.2714 -0.5162 28 1 5.4132 -1.9380 -0.5152 29 1 7.9334 -0.8029 0.9531 30 1 7.6778 -1.7004 2.4686 31 1 7.4475 -2.5145 0.9024 32 1 5.3918 -3.1159 1.8554 33 1 6.0675 -2.0594 3.9373 34 1 4.6216 -1.0316 3.7922 35 1 3.1836 -3.0521 3.8218 36 1 4.6300 -4.0792 3.9667 37 1 2.9824 -4.2336 8.3685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070633840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:39 Heat of formation + Delta-G solvation = 9.399886 kcal Electronic energy + Delta-G solvation = -16272.950321 eV Core-core repulsion = 13754.944741 eV Total energy + Delta-G solvation = -2518.005580 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.19877 -36.90729 -33.71515 -32.38294 -31.18696 -28.78791 -27.99539 -24.72631 -23.76266 -22.56446 -20.80121 -20.24278 -18.52028 -16.84104 -16.63228 -15.25176 -14.87102 -14.59155 -14.27883 -13.97283 -13.70425 -13.33090 -12.92605 -12.74013 -12.70640 -12.40798 -12.12958 -12.02166 -11.72014 -11.40235 -11.24617 -11.16228 -10.96799 -10.73985 -10.35595 -10.05129 -9.84834 -9.66419 -9.19176 -8.50710 -8.21035 -8.12414 -7.79304 -6.01563 -3.99453 1.26403 1.92315 2.34703 2.96153 3.33881 3.41376 3.48245 4.49069 4.59347 4.87763 5.01879 5.16369 5.27961 5.33309 5.34831 5.48136 5.51331 5.53655 5.68676 5.78373 5.81652 5.91166 5.98781 6.03049 6.18389 6.29077 6.37823 6.41229 6.52530 6.77134 6.82739 7.19239 7.42808 7.67113 7.80553 7.95821 8.56610 9.02826 9.61192 11.11901 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.006152 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.657335 B = 4549.910837 C = 5523.794834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.202 4.202 3 C -0.140 4.140 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.038 4.038 7 C 0.086 3.914 8 H 0.078 0.922 9 C -0.181 4.181 10 N -0.685 5.685 11 C 0.077 3.923 12 C -0.009 4.009 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.262 1.262 21 S 0.138 5.862 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.334 0.666 33 H 0.020 0.980 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.007 0.993 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 6.672 -19.247 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.319 4.319 3 C -0.171 4.171 4 C -0.187 4.187 5 C -0.265 4.265 6 C -0.078 4.078 7 C -0.026 4.026 8 H 0.096 0.904 9 C -0.240 4.240 10 N -0.315 5.315 11 C -0.051 4.051 12 C -0.047 4.047 13 C -0.558 4.558 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.186 1.186 21 S 0.404 5.596 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.026 0.974 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.519 5.374 -19.178 19.923 hybrid contribution 0.747 0.523 0.202 0.934 sum 0.228 5.897 -18.976 19.872 Atomic orbital electron populations 1.20273 0.88443 1.03039 1.02051 1.24504 0.99853 0.96751 1.10829 1.19908 0.92994 0.98745 1.05453 1.19915 0.96005 0.95791 1.06953 1.24226 0.98732 0.96081 1.07440 1.20214 0.89748 1.00764 0.97081 1.21557 0.90111 0.96913 0.93992 0.90391 1.22501 0.97661 1.01484 1.02340 1.60678 1.55313 1.05044 1.10509 1.21930 0.98255 1.00884 0.84003 1.19531 0.95844 0.93254 0.96034 1.21079 1.31633 1.13549 0.89515 0.91213 1.25000 0.96059 0.97694 0.94667 1.69917 1.42866 1.38002 1.03642 0.86770 0.79766 0.82795 0.79966 1.20444 1.21469 1.18648 1.84328 0.95721 1.08329 1.71251 0.91345 0.91398 0.90963 0.85288 0.85209 0.90369 0.91045 0.92488 0.92162 0.92572 0.84877 0.96127 0.91962 0.95629 0.97437 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.38 36.01 0.37 -0.48 16 2 C -0.20 -2.71 6.51 -36.00 -0.23 -2.95 16 3 C -0.14 -1.83 10.05 -41.21 -0.41 -2.25 16 4 C -0.16 -2.06 10.05 -41.21 -0.41 -2.47 16 5 C -0.15 -2.01 5.49 -36.00 -0.20 -2.20 16 6 C -0.04 -0.45 5.39 -27.88 -0.15 -0.60 16 7 C 0.09 1.15 2.58 -67.71 -0.17 0.98 16 8 H 0.08 1.14 7.80 -51.93 -0.40 0.74 16 9 C -0.18 -2.10 9.16 37.16 0.34 -1.76 16 10 N -0.69 -11.31 5.96 -106.72 -0.64 -11.94 16 11 C 0.08 1.57 5.42 -3.82 -0.02 1.55 16 12 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 13 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 17 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 20 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 21 S 0.14 1.99 23.31 -107.50 -2.51 -0.51 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 32 H 0.33 5.23 8.47 -39.29 -0.33 4.90 16 33 H 0.02 0.42 7.44 -51.93 -0.39 0.03 16 34 H 0.06 1.34 8.06 -51.93 -0.42 0.92 16 35 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 36 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -31.34 319.30 -9.75 -41.09 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.09 Total: 0.68 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -1.44 Total: -24.07 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.14 Total: -39.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.51 Total: -0.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.34 -9.75 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070633840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.494 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds