Wall clock time and date at job start Mon Mar 30 2020 07:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 H 1.09002 * 109.47069 * 304.99691 * 7 6 5 9 9 C 1.53006 * 109.46846 * 185.00257 * 7 6 5 10 10 N 1.46898 * 109.47357 * 65.00030 * 7 6 5 11 11 C 1.46900 * 110.99928 * 204.99982 * 10 7 6 12 12 C 1.52999 * 109.47217 * 180.02562 * 11 10 7 13 13 C 1.50697 * 109.47418 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99951 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00264 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00276 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99867 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47046 * 90.00347 * 17 15 13 19 19 H 1.48501 * 109.47124 * 210.00542 * 17 15 13 20 20 H 1.48498 * 109.47369 * 330.00418 * 17 15 13 21 21 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 22 22 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 23 23 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 24 24 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 25 25 H 1.08001 * 122.54079 * 0.05886 * 3 2 1 26 26 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 28 28 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 29 29 H 1.09001 * 109.47241 * 59.99481 * 9 7 6 30 30 H 1.08996 * 109.46751 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.46824 * 299.99583 * 9 7 6 32 32 H 1.00901 * 110.99566 * 81.04409 * 10 7 6 33 33 H 1.09002 * 109.47105 * 300.00194 * 11 10 7 34 34 H 1.09001 * 109.47267 * 59.99559 * 11 10 7 35 35 H 1.09002 * 109.47054 * 299.99996 * 12 11 10 36 36 H 1.08999 * 109.47041 * 59.99494 * 12 11 10 37 37 H 0.96999 * 120.00250 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 1 5.7540 -0.2147 1.9795 9 6 7.3367 -1.5735 1.4412 10 7 5.0606 -2.1942 2.0984 11 6 5.0480 -2.0064 3.5552 12 6 4.2031 -3.1047 4.2038 13 6 4.1896 -2.9117 5.6983 14 1 4.7301 -2.0882 6.1413 15 6 3.4883 -3.7868 6.5002 16 7 3.4761 -3.6181 7.8044 17 14 2.5542 -5.2116 5.7340 18 1 3.4447 -6.3967 5.6451 19 1 1.3754 -5.5402 6.5753 20 1 2.0998 -4.8306 4.3726 21 16 2.5211 -1.4371 -0.0068 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.8669 2.0895 0.0009 26 1 4.3721 1.6351 -0.0002 27 1 6.0384 -0.2714 -0.5162 28 1 5.4132 -1.9380 -0.5152 29 1 7.9334 -0.8029 0.9531 30 1 7.6778 -1.7004 2.4686 31 1 7.4475 -2.5145 0.9024 32 1 5.3918 -3.1159 1.8554 33 1 6.0675 -2.0594 3.9373 34 1 4.6216 -1.0316 3.7922 35 1 3.1836 -3.0521 3.8218 36 1 4.6300 -4.0792 3.9667 37 1 2.9824 -4.2336 8.3685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070633840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:37 Heat of formation + Delta-G solvation = -9.492983 kcal Electronic energy + Delta-G solvation = -16273.769577 eV Core-core repulsion = 13754.944741 eV Total energy + Delta-G solvation = -2518.824836 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.25885 -38.09708 -35.51954 -33.97357 -32.55716 -30.28386 -29.08809 -26.03963 -25.29740 -23.56949 -22.33631 -21.70729 -19.51664 -18.96156 -17.74696 -16.51836 -16.34035 -15.99152 -15.79094 -15.35356 -14.80544 -14.62406 -14.29616 -14.09417 -13.83550 -13.66258 -13.45754 -13.14532 -12.95453 -12.88210 -12.63277 -12.34635 -12.14950 -11.91944 -11.80477 -11.74836 -11.47081 -11.42524 -11.37614 -10.77529 -9.35464 -9.17365 -9.02444 -8.30800 -6.34967 0.25219 0.90887 1.32839 1.34639 1.37677 1.51100 1.96848 2.35904 3.04937 3.33378 3.87692 4.10343 4.15188 4.28478 4.44789 4.46546 4.49332 4.56543 4.65069 4.75321 4.79282 4.89017 4.90559 4.95293 4.98527 5.09446 5.15156 5.28380 5.33478 5.42764 5.51137 5.52554 5.64790 5.80440 6.19923 6.27158 6.60454 6.74598 7.29908 8.86061 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.006152 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.657335 B = 4549.910837 C = 5523.794834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.209 4.209 3 C -0.151 4.151 4 C -0.163 4.163 5 C -0.156 4.156 6 C -0.032 4.032 7 C 0.087 3.913 8 H 0.064 0.936 9 C -0.174 4.174 10 N -0.685 5.685 11 C 0.095 3.905 12 C -0.001 4.001 13 C -0.533 4.533 14 H 0.030 0.970 15 C 0.006 3.994 16 N -0.951 5.951 17 Si 0.952 3.048 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.249 1.249 21 S 0.091 5.909 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.341 0.659 33 H 0.017 0.983 34 H 0.044 0.956 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 6.430 -21.521 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.327 4.327 3 C -0.181 4.181 4 C -0.192 4.192 5 C -0.273 4.273 6 C -0.071 4.071 7 C -0.024 4.024 8 H 0.082 0.918 9 C -0.233 4.233 10 N -0.316 5.316 11 C -0.034 4.034 12 C -0.039 4.039 13 C -0.571 4.571 14 H 0.048 0.952 15 C -0.191 4.191 16 N -0.592 5.592 17 Si 0.775 3.225 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.172 1.172 21 S 0.356 5.644 22 H 0.104 0.896 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.166 0.834 26 H 0.167 0.833 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.468 5.144 -21.476 22.088 hybrid contribution 0.767 0.723 0.934 1.409 sum 0.300 5.867 -20.541 21.365 Atomic orbital electron populations 1.20361 0.86854 1.03334 1.03315 1.24857 1.01056 0.96085 1.10659 1.20237 0.93175 0.99608 1.05064 1.20240 0.96601 0.96196 1.06198 1.24471 0.98976 0.96058 1.07831 1.20234 0.89153 1.01885 0.95852 1.21603 0.91061 0.95204 0.94529 0.91799 1.22415 0.96253 1.02882 1.01722 1.60572 1.56856 1.06377 1.07774 1.21521 0.96979 0.98408 0.86488 1.19398 0.96284 0.95120 0.93101 1.21417 1.31057 1.12383 0.92246 0.95194 1.25986 0.97126 1.00926 0.95051 1.70065 1.44176 1.39574 1.05385 0.85635 0.78404 0.79032 0.79454 1.18914 1.20937 1.17230 1.84414 0.97492 1.10159 1.72324 0.89572 0.91891 0.89807 0.83364 0.83324 0.87631 0.90326 0.90172 0.93911 0.91372 0.84054 0.96515 0.93716 0.96289 0.96369 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.38 71.24 0.74 -0.87 16 2 C -0.21 -5.38 6.51 24.59 0.16 -5.22 16 3 C -0.15 -3.68 10.05 21.22 0.21 -3.46 16 4 C -0.16 -3.96 10.05 21.22 0.21 -3.75 16 5 C -0.16 -3.99 5.49 24.59 0.14 -3.86 16 6 C -0.03 -0.67 5.39 29.85 0.16 -0.51 16 7 C 0.09 2.17 2.58 44.92 0.12 2.29 16 8 H 0.06 1.80 7.80 -2.39 -0.02 1.78 16 9 C -0.17 -3.61 9.16 71.98 0.66 -2.95 16 10 N -0.68 -21.77 5.96 -491.56 -2.93 -24.70 16 11 C 0.10 3.87 5.42 86.30 0.47 4.34 16 12 C 0.00 -0.06 4.30 29.85 0.13 0.07 16 13 C -0.53 -31.69 9.66 25.60 0.25 -31.44 16 14 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 15 C 0.01 0.35 5.47 84.65 0.46 0.81 16 16 N -0.95 -60.91 13.96 21.44 0.30 -60.61 16 17 Si 0.95 45.56 27.47 68.60 1.88 47.45 16 18 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 21 S 0.09 2.56 23.31 -56.49 -1.32 1.24 16 22 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 26 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.04 1.04 7.45 -2.39 -0.02 1.02 16 31 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.34 10.06 8.47 -89.69 -0.76 9.30 16 33 H 0.02 0.68 7.44 -2.39 -0.02 0.67 16 34 H 0.04 1.96 8.06 -2.39 -0.02 1.94 16 35 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 36 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 37 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -68.33 319.30 1.86 -66.47 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.22 Total: 14.67 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 3.70 Total: -44.53 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -2.63 Total: -85.31 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.45 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.32 Total: 1.24 kcal Total: -68.33 1.86 -66.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070633840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.979 kcal (2) G-P(sol) polarization free energy of solvation -68.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds