Wall clock time and date at job start Mon Mar 30 2020 07:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47526 * 2 1 4 4 C 1.33389 * 125.20272 * 90.00149 * 3 2 1 5 5 C 1.38425 * 114.92184 * 179.79332 * 4 3 2 6 6 C 1.33387 * 114.91654 * 0.42665 * 5 4 3 7 7 C 1.50703 * 125.19930 * 179.85628 * 6 5 4 8 8 N 1.46501 * 109.46838 * 89.72360 * 7 6 5 9 9 C 1.36936 * 120.00218 * 95.97924 * 8 7 6 10 10 H 1.08000 * 120.00640 * 216.00076 * 9 8 7 11 11 C 1.38812 * 119.99999 * 36.00357 * 9 8 7 12 12 N 1.31622 * 119.99918 * 214.41019 * 11 9 8 13 13 Si 1.86798 * 119.99865 * 34.40411 * 11 9 8 14 14 H 1.48503 * 109.47199 * 95.18102 * 13 11 9 15 15 H 1.48503 * 109.47150 * 215.18008 * 13 11 9 16 16 H 1.48500 * 109.47386 * 335.18294 * 13 11 9 17 17 C 1.46501 * 119.99932 * 275.98039 * 8 7 6 18 18 C 1.53003 * 109.47126 * 120.21202 * 17 8 7 19 19 C 1.53003 * 109.47163 * 240.20725 * 17 8 7 20 20 S 1.75880 * 125.20260 * 270.02191 * 3 2 1 21 21 H 1.09009 * 109.46948 * 59.99795 * 1 2 3 22 22 H 1.08992 * 109.47707 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46858 * 300.00430 * 1 2 3 24 24 H 1.09008 * 109.47127 * 239.99856 * 2 1 3 25 25 H 1.08996 * 109.47211 * 120.00252 * 2 1 3 26 26 H 1.08004 * 122.53854 * 0.02562 * 4 3 2 27 27 H 1.08000 * 122.53861 * 180.26956 * 5 4 3 28 28 H 1.09002 * 109.47397 * 329.72913 * 7 6 5 29 29 H 1.09001 * 109.47434 * 209.71906 * 7 6 5 30 30 H 0.97007 * 119.99520 * 179.97438 * 12 11 9 31 31 H 1.08995 * 109.47675 * 0.21077 * 17 8 7 32 32 H 1.08998 * 109.47181 * 66.36007 * 18 17 8 33 33 H 1.09002 * 109.47032 * 186.35927 * 18 17 8 34 34 H 1.08998 * 109.46945 * 306.35768 * 18 17 8 35 35 H 1.09002 * 109.46854 * 62.62118 * 19 17 8 36 36 H 1.08998 * 109.47212 * 182.61679 * 19 17 8 37 37 H 1.09001 * 109.47312 * 302.61839 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2888 2.1457 1.0899 5 6 2.7471 3.4283 0.8429 6 6 2.8545 3.7479 -0.4477 7 6 3.3250 5.0781 -0.9770 8 7 4.7796 5.0484 -1.1487 9 6 5.3188 4.7605 -2.3741 10 1 6.2310 4.1864 -2.4414 11 6 4.6928 5.2068 -3.5299 12 7 4.7242 4.4715 -4.6211 13 14 3.8057 6.8507 -3.5364 14 1 4.7174 7.9031 -4.0526 15 1 2.6070 6.7629 -4.4086 16 1 3.3875 7.1930 -2.1533 17 6 5.6575 5.3266 -0.0093 18 6 6.5535 4.1142 0.2521 19 6 6.5276 6.5458 -0.3215 20 16 2.3699 2.3768 -1.4371 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0275 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.1528 1.7599 2.0895 27 1 2.9964 4.1187 1.6351 28 1 3.0585 5.8649 -0.2712 29 1 2.8498 5.2755 -1.9379 30 1 4.2864 4.7833 -5.4287 31 1 5.0527 5.5286 0.8747 32 1 7.2375 3.9804 -0.5860 33 1 7.1257 4.2756 1.1658 34 1 5.9358 3.2230 0.3629 35 1 5.8914 7.4197 -0.4620 36 1 7.2130 6.7248 0.5068 37 1 7.0980 6.3615 -1.2319 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:27 Heat of formation + Delta-G solvation = 40.131092 kcal Electronic energy + Delta-G solvation = -17019.967665 eV Core-core repulsion = 14503.294690 eV Total energy + Delta-G solvation = -2516.672975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -37.77209 -36.50098 -33.58177 -32.39651 -30.94932 -28.29808 -26.29442 -25.53856 -23.79756 -22.59311 -21.62937 -19.44747 -18.28284 -16.77648 -16.01934 -14.93108 -14.78929 -14.72830 -13.94348 -13.60928 -13.43194 -12.94228 -12.63996 -12.57661 -12.13816 -12.03637 -11.81855 -11.57496 -11.37487 -11.33652 -11.10428 -10.82137 -10.72814 -10.41633 -10.35086 -10.19781 -9.86298 -9.83815 -9.52643 -8.46234 -7.80671 -7.72869 -6.87993 -6.10486 -3.34419 1.68081 2.36338 2.82724 3.32417 3.37876 3.47513 3.51824 4.52390 4.96917 5.06016 5.22476 5.28037 5.45229 5.65257 5.73695 5.82331 5.91952 5.94087 6.04368 6.10034 6.18217 6.23429 6.28126 6.31258 6.35077 6.52605 6.57405 6.67330 6.73310 6.82196 6.96525 7.11717 7.17620 7.21555 7.98179 8.39103 8.96762 9.69737 10.12836 11.04359 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.008150 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.676872 B = 3434.669773 C = 4095.725222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C -0.216 4.216 4 C -0.133 4.133 5 C -0.168 4.168 6 C -0.151 4.151 7 C 0.208 3.792 8 N -0.585 5.585 9 C -0.269 4.269 10 H 0.078 0.922 11 C 0.048 3.952 12 N -0.871 5.871 13 Si 0.837 3.163 14 H -0.289 1.289 15 H -0.294 1.294 16 H -0.262 1.262 17 C 0.168 3.832 18 C -0.151 4.151 19 C -0.153 4.153 20 S 0.129 5.871 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -3.952 10.151 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.334 4.334 4 C -0.165 4.165 5 C -0.198 4.198 6 C -0.273 4.273 7 C 0.080 3.920 8 N -0.305 5.305 9 C -0.397 4.397 10 H 0.095 0.905 11 C -0.154 4.154 12 N -0.509 5.509 13 Si 0.664 3.336 14 H -0.217 1.217 15 H -0.220 1.220 16 H -0.187 1.187 17 C 0.061 3.939 18 C -0.210 4.210 19 C -0.212 4.212 20 S 0.394 5.606 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.363 -4.223 8.382 10.810 hybrid contribution -0.266 1.207 1.342 1.824 sum -5.630 -3.016 9.724 11.634 Atomic orbital electron populations 1.21775 0.95057 1.01189 1.02279 1.19950 0.95556 0.90668 1.02375 1.24464 1.10747 1.00853 0.97324 1.19849 1.03919 0.94470 0.98214 1.19828 1.07067 0.97114 0.95811 1.25970 1.02939 1.02231 0.96140 1.19915 0.85428 0.88166 0.98485 1.44209 0.98835 1.80515 1.06955 1.18559 1.11121 1.29101 0.80907 0.90470 1.25422 0.97431 0.97367 0.95211 1.70093 1.42960 1.34788 1.03078 0.87460 0.79023 0.88982 0.78155 1.21650 1.22036 1.18668 1.20382 0.91229 0.92694 0.89545 1.22108 0.99911 0.99393 0.99609 1.22130 0.99574 0.98471 1.01046 1.84642 1.62455 1.05372 1.08140 0.92518 0.92695 0.92634 0.91303 0.91008 0.85989 0.85712 0.92752 0.91719 0.92701 0.93295 0.92600 0.94491 0.93221 0.93880 0.94298 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.05 -0.61 6.43 -27.89 -0.18 -0.78 16 3 C -0.22 -3.56 5.76 -36.00 -0.21 -3.77 16 4 C -0.13 -2.16 10.05 -41.21 -0.41 -2.58 16 5 C -0.17 -2.97 10.05 -41.21 -0.41 -3.38 16 6 C -0.15 -3.04 6.08 -36.00 -0.22 -3.26 16 7 C 0.21 4.51 4.33 -5.19 -0.02 4.49 16 8 N -0.58 -13.35 2.00 -167.02 -0.33 -13.69 16 9 C -0.27 -7.12 8.50 -15.06 -0.13 -7.25 16 10 H 0.08 2.24 7.13 -52.49 -0.37 1.87 16 11 C 0.05 1.33 4.99 -17.43 -0.09 1.25 16 12 N -0.87 -25.47 13.97 55.49 0.78 -24.70 16 13 Si 0.84 20.84 26.28 -169.99 -4.47 16.37 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.26 -6.19 5.95 56.52 0.34 -5.86 16 17 C 0.17 3.28 3.36 -67.93 -0.23 3.06 16 18 C -0.15 -2.82 9.03 37.16 0.34 -2.49 16 19 C -0.15 -2.84 9.21 37.16 0.34 -2.50 16 20 S 0.13 2.55 23.31 -107.50 -2.51 0.04 16 21 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 27 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.05 1.08 8.05 -51.93 -0.42 0.66 16 29 H 0.06 1.52 4.57 -51.93 -0.24 1.29 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 32 H 0.05 1.12 7.26 -51.93 -0.38 0.74 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.32 7.58 -51.93 -0.39 0.92 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -28.34 313.58 -8.72 -37.06 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.06 Total: -1.32 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -0.85 Total: -18.49 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.44 Total: -38.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.47 Total: 16.37 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.51 Total: 0.04 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.34 -8.72 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.189 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds