Wall clock time and date at job start Mon Mar 30 2020 07:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.47076 * 2 1 4 4 N 1.30674 * 123.22252 * 90.02152 * 3 2 1 5 5 C 1.29528 * 117.62668 * 179.97438 * 4 3 2 6 6 C 1.50706 * 124.55694 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46708 * 120.00245 * 6 5 4 8 8 C 1.53006 * 109.46847 * 184.99563 * 7 6 5 9 9 C 1.52997 * 109.46859 * 239.99932 * 6 5 4 10 10 C 1.53003 * 109.47180 * 65.00652 * 9 6 5 11 11 S 1.70874 * 110.87986 * 0.24444 * 5 4 3 12 12 C 1.38581 * 123.22296 * 269.97866 * 3 2 1 13 13 C 1.40037 * 126.25724 * 0.04524 * 12 3 2 14 14 H 1.07998 * 119.99928 * 359.97438 * 13 12 3 15 15 C 1.40074 * 120.00302 * 179.97438 * 13 12 3 16 16 N 1.30861 * 119.99793 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99988 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47122 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47218 * 119.99809 * 17 15 13 20 20 H 1.48504 * 109.46919 * 239.99691 * 17 15 13 21 21 H 1.08993 * 109.47225 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46982 * 300.00448 * 1 2 3 23 23 H 1.09003 * 109.46627 * 60.00179 * 1 2 3 24 24 H 1.08990 * 109.47261 * 239.99639 * 2 1 3 25 25 H 1.09003 * 109.46627 * 119.99821 * 2 1 3 26 26 H 1.08995 * 109.47415 * 0.02562 * 6 5 4 27 27 H 1.08996 * 109.47547 * 304.99598 * 7 6 5 28 28 H 1.09004 * 109.47474 * 65.00242 * 7 6 5 29 29 H 1.09004 * 109.46543 * 60.00658 * 8 7 6 30 30 H 1.08996 * 109.46808 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.47076 * 300.00324 * 8 7 6 32 32 H 1.09000 * 109.46893 * 184.99894 * 9 6 5 33 33 H 1.08995 * 109.47599 * 305.00376 * 9 6 5 34 34 H 1.08994 * 109.47234 * 179.97438 * 10 9 6 35 35 H 1.09001 * 109.46860 * 299.99905 * 10 9 6 36 36 H 1.08995 * 109.47080 * 59.99406 * 10 9 6 37 37 H 0.97001 * 119.99551 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2714 2.0957 1.0932 5 6 2.7016 3.3110 0.9668 6 6 3.0254 4.2272 2.1187 7 6 4.4967 4.6401 2.0437 8 6 4.8577 5.4679 3.2788 9 6 2.1414 5.4736 2.0430 10 6 0.6781 5.0740 2.2429 11 16 2.8452 3.7379 -0.6814 12 6 2.2859 2.1366 -1.1593 13 6 2.1219 1.6739 -2.4708 14 1 1.7665 0.6697 -2.6487 15 6 2.4187 2.5135 -3.5520 16 7 2.8488 3.7305 -3.3365 17 14 2.2006 1.8960 -5.3015 18 1 1.7064 0.4959 -5.2742 19 1 1.2180 2.7545 -6.0106 20 1 3.5045 1.9466 -6.0104 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.8417 3.7076 3.0591 27 1 5.1230 3.7487 2.0081 28 1 4.6616 5.2361 1.1461 29 1 4.6929 4.8719 4.1765 30 1 5.9060 5.7617 3.2256 31 1 4.2315 6.3593 3.3144 32 1 2.4360 6.1759 2.8229 33 1 2.2595 5.9441 1.0669 34 1 0.0484 5.9620 2.1894 35 1 0.3835 4.3717 1.4631 36 1 0.5601 4.6035 3.2190 37 1 3.0540 4.3120 -4.0852 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082424044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:14 Heat of formation + Delta-G solvation = -35.329935 kcal Electronic energy + Delta-G solvation = -16916.543995 eV Core-core repulsion = 14396.598784 eV Total energy + Delta-G solvation = -2519.945211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.76864 -37.67073 -35.84510 -33.73088 -32.53014 -30.93934 -28.58530 -26.28942 -24.70551 -23.67371 -22.99512 -20.98594 -20.26524 -18.89009 -17.45252 -16.99646 -15.80051 -15.48622 -15.29937 -15.03868 -14.73292 -14.57607 -14.28927 -13.83666 -13.58172 -13.27486 -13.10766 -12.88679 -12.76937 -12.75422 -12.43888 -12.41805 -12.10714 -11.98259 -11.73224 -11.66711 -11.54211 -11.39774 -11.20100 -10.95873 -9.65921 -9.59326 -8.89296 -8.77567 -6.39686 0.73274 1.36551 1.50711 1.54001 1.61193 2.04334 2.23404 2.44428 3.14651 3.82878 4.01432 4.23185 4.32902 4.42938 4.45730 4.53600 4.62941 4.76458 4.78677 4.89557 4.94816 4.98014 5.02914 5.05837 5.12675 5.16578 5.19441 5.28168 5.33678 5.46787 5.48324 5.54351 5.56912 5.62160 5.91362 6.14485 6.54608 6.55802 7.97859 8.05746 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.007783 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.163157 B = 3596.898254 C = 4299.061189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.006 4.006 3 C -0.173 4.173 4 N -0.455 5.455 5 C -0.156 4.156 6 C 0.019 3.981 7 C -0.111 4.111 8 C -0.142 4.142 9 C -0.108 4.108 10 C -0.138 4.138 11 S 0.106 5.894 12 C -0.033 4.033 13 C -0.396 4.396 14 H 0.101 0.899 15 C 0.012 3.988 16 N -0.801 5.801 17 Si 1.006 2.994 18 H -0.252 1.252 19 H -0.262 1.262 20 H -0.262 1.262 21 H 0.071 0.929 22 H 0.034 0.966 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.053 0.947 37 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 2.973 2.405 3.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.046 4.046 3 C -0.306 4.306 4 N -0.167 5.167 5 C -0.427 4.427 6 C -0.003 4.003 7 C -0.149 4.149 8 C -0.199 4.199 9 C -0.146 4.146 10 C -0.195 4.195 11 S 0.358 5.642 12 C -0.156 4.156 13 C -0.432 4.432 14 H 0.119 0.881 15 C -0.207 4.207 16 N -0.428 5.428 17 Si 0.824 3.176 18 H -0.175 1.175 19 H -0.186 1.186 20 H -0.186 1.186 21 H 0.090 0.910 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.406 3.938 2.464 4.663 hybrid contribution -0.341 -1.211 -0.770 1.475 sum 0.065 2.727 1.694 3.211 Atomic orbital electron populations 1.21588 0.95571 1.01018 1.00219 1.19416 0.95271 0.90062 0.99830 1.20313 1.23808 1.00190 0.86263 1.65117 1.11160 1.06773 1.33698 1.26453 1.19193 0.96767 1.00286 1.19381 0.94942 0.92884 0.93050 1.21522 0.94735 0.99264 0.99409 1.21774 1.01792 0.99910 0.96396 1.21599 0.94675 0.96547 1.01788 1.21616 0.96773 1.00568 1.00543 1.83771 1.67167 1.15271 0.97961 1.23465 0.98833 0.95204 0.98145 1.19468 1.34105 1.00772 0.88885 0.88091 1.27150 0.92260 0.94228 1.07042 1.69056 1.29629 1.07289 1.36842 0.84750 0.79315 0.79851 0.73636 1.17523 1.18605 1.18615 0.90971 0.94701 0.94250 0.92456 0.93336 0.91816 0.94156 0.92856 0.92469 0.91723 0.91238 0.89022 0.93245 0.91504 0.96182 0.92784 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.90 71.98 0.71 -4.22 16 2 C -0.01 -0.26 6.11 29.85 0.18 -0.08 16 3 C -0.17 -9.07 6.15 42.81 0.26 -8.81 16 4 N -0.46 -23.99 10.48 -176.30 -1.85 -25.84 16 5 C -0.16 -7.53 5.00 88.45 0.44 -7.09 16 6 C 0.02 0.75 2.28 -11.54 -0.03 0.72 16 7 C -0.11 -3.77 5.26 30.60 0.16 -3.61 16 8 C -0.14 -3.53 9.67 71.98 0.70 -2.83 16 9 C -0.11 -3.60 5.22 30.59 0.16 -3.44 16 10 C -0.14 -4.70 9.73 71.98 0.70 -4.00 16 11 S 0.11 5.38 19.53 -56.49 -1.10 4.28 16 12 C -0.03 -1.81 6.25 22.79 0.14 -1.67 16 13 C -0.40 -20.16 8.93 23.15 0.21 -19.95 16 14 H 0.10 4.88 6.94 -2.91 -0.02 4.86 16 15 C 0.01 0.54 5.50 85.28 0.47 1.01 16 16 N -0.80 -38.58 10.76 21.86 0.24 -38.35 16 17 Si 1.01 34.95 29.56 68.60 2.03 36.98 16 18 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 19 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 20 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 21 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 2.46 7.15 -2.39 -0.02 2.45 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 29 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.53 6.46 -2.39 -0.02 1.51 16 32 H 0.09 2.42 6.34 -2.39 -0.02 2.40 16 33 H 0.05 1.76 7.72 -2.39 -0.02 1.75 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.02 0.81 7.38 -2.39 -0.02 0.80 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.31 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -59.72 311.43 4.46 -55.26 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.03 Total: 21.63 kcal Atomic # 6 Polarization: -58.07 SS G_CDS: 4.11 Total: -53.97 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -1.61 Total: -64.18 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.10 Total: 4.28 kcal Total: -59.72 4.46 -55.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082424044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.931 kcal (2) G-P(sol) polarization free energy of solvation -59.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds