Wall clock time and date at job start Mon Mar 30 2020 07:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47384 * 2 1 4 4 C 1.50695 * 109.47095 * 180.02562 * 3 2 1 5 5 N 1.30677 * 123.22134 * 90.02973 * 4 3 2 6 6 C 1.29529 * 117.62898 * 179.97438 * 5 4 3 7 7 C 1.50699 * 124.55956 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47337 * 89.99840 * 7 6 5 9 9 C 1.53006 * 109.47127 * 295.00177 * 8 7 6 10 10 C 1.52997 * 109.47232 * 175.00055 * 8 7 6 11 11 S 1.70883 * 110.87508 * 0.24026 * 6 5 4 12 12 C 1.38586 * 123.22976 * 269.98556 * 4 3 2 13 13 C 1.40046 * 126.25016 * 0.04230 * 12 4 3 14 14 H 1.08002 * 120.00362 * 359.97438 * 13 12 4 15 15 C 1.40070 * 119.99794 * 180.02562 * 13 12 4 16 16 N 1.30861 * 120.00149 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99729 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47319 * 89.99477 * 17 15 13 19 19 H 1.48501 * 109.47006 * 209.99509 * 17 15 13 20 20 H 1.48495 * 109.47433 * 329.99060 * 17 15 13 21 21 H 1.09005 * 109.47618 * 59.99476 * 1 2 3 22 22 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46877 * 299.99875 * 1 2 3 24 24 H 1.08999 * 109.47070 * 240.00251 * 2 1 3 25 25 H 1.08997 * 109.47300 * 120.00413 * 2 1 3 26 26 H 1.08999 * 109.46812 * 60.00093 * 3 2 1 27 27 H 1.08997 * 109.47239 * 300.00450 * 3 2 1 28 28 H 1.09002 * 109.47102 * 329.99630 * 7 6 5 29 29 H 1.09004 * 109.47407 * 209.99851 * 7 6 5 30 30 H 1.09001 * 109.47289 * 55.00130 * 8 7 6 31 31 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 32 32 H 1.08993 * 109.46955 * 60.00011 * 9 8 7 33 33 H 1.09000 * 109.47050 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47140 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47230 * 299.99295 * 10 8 7 36 36 H 1.09001 * 109.47375 * 60.00133 * 10 8 7 37 37 H 0.96999 * 119.99999 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2624 1.4431 -1.0941 6 6 5.5516 1.4435 -0.9684 7 6 6.5229 1.4437 -2.1207 8 6 6.8512 2.8863 -2.5107 9 6 5.5904 3.5700 -3.0439 10 6 7.9300 2.8884 -3.5956 11 16 6.0027 1.4362 0.6798 12 6 4.3069 1.4425 1.1583 13 6 3.8165 1.4418 2.4701 14 1 2.7514 1.4416 2.6485 15 6 4.7076 1.4426 3.5508 16 7 5.9983 1.4434 3.3347 17 14 4.0535 1.4424 5.3006 18 1 3.8810 0.0423 5.7644 19 1 5.0156 2.1431 6.1887 20 1 2.7442 2.1418 5.3397 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 6.0767 0.9297 -2.9721 29 1 7.4377 0.9302 -1.8249 30 1 7.2146 3.4255 -1.6359 31 1 5.2271 3.0308 -3.9187 32 1 4.8219 3.5685 -2.2710 33 1 5.8242 4.5978 -3.3213 34 1 8.1642 3.9161 -3.8731 35 1 8.8282 2.4014 -3.2158 36 1 7.5666 2.3492 -4.4705 37 1 6.6153 1.4435 4.0831 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082428023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:07 Heat of formation + Delta-G solvation = -24.596821 kcal Electronic energy + Delta-G solvation = -16660.410470 eV Core-core repulsion = 14140.930683 eV Total energy + Delta-G solvation = -2519.479788 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.91391 -35.77279 -34.08433 -33.62408 -29.93032 -27.83850 -26.66085 -26.60907 -23.71066 -21.79282 -20.52263 -19.32177 -18.61649 -16.97879 -15.74576 -15.20125 -14.33690 -14.16530 -13.80569 -13.54943 -13.08199 -12.93822 -12.76612 -11.94380 -11.87640 -11.77071 -11.68466 -11.45503 -11.34467 -11.26988 -10.84810 -10.78917 -10.51884 -10.45103 -10.24751 -10.14289 -10.03640 -9.82112 -9.67949 -9.12435 -7.75610 -7.67828 -7.00964 -6.97520 -4.52108 2.52082 2.89823 2.94719 3.06020 3.50445 3.65389 4.07047 4.25738 4.99023 5.41820 5.52889 5.54589 5.71375 5.77474 5.86557 6.00475 6.06710 6.21989 6.25568 6.30460 6.35351 6.44057 6.52804 6.60224 6.63511 6.67082 6.69750 6.77164 6.94125 6.97018 6.99798 7.08793 7.18271 7.42887 7.76665 7.99741 8.39884 8.41690 9.78468 9.88074 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.008103 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.518172 B = 3454.480034 C = 4791.741530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.001 3.999 4 C -0.146 4.146 5 N -0.423 5.423 6 C -0.174 4.174 7 C 0.000 4.000 8 C -0.090 4.090 9 C -0.135 4.135 10 C -0.144 4.144 11 S 0.116 5.884 12 C 0.004 3.996 13 C -0.370 4.370 14 H 0.097 0.903 15 C 0.049 3.951 16 N -0.776 5.776 17 Si 0.932 3.068 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.258 1.258 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 0.576 -2.292 2.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.039 4.039 4 C -0.280 4.280 5 N -0.135 5.135 6 C -0.443 4.443 7 C -0.041 4.041 8 C -0.110 4.110 9 C -0.193 4.193 10 C -0.201 4.201 11 S 0.368 5.632 12 C -0.120 4.120 13 C -0.407 4.407 14 H 0.115 0.885 15 C -0.172 4.172 16 N -0.402 5.402 17 Si 0.756 3.244 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.181 1.181 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.717 0.567 -2.344 2.516 hybrid contribution -1.083 -0.025 0.839 1.371 sum -0.366 0.542 -1.504 1.640 Atomic orbital electron populations 1.21796 0.97332 1.00412 1.01053 1.21500 0.93622 0.98640 1.01611 1.19416 0.89949 0.94799 0.99753 1.19796 0.95024 1.26889 0.86329 1.65021 1.05091 1.10189 1.33239 1.25729 0.93605 1.25344 0.99671 1.19616 0.95196 0.95018 0.94294 1.21102 0.95158 0.97167 0.97559 1.21715 0.98217 0.98080 1.01261 1.21849 0.98600 1.00827 0.98874 1.84001 1.08351 1.73753 0.97061 1.23047 0.93795 0.98010 0.97114 1.19152 0.95351 1.37695 0.88518 0.88489 1.26201 0.94530 0.93254 1.03240 1.69019 1.02953 1.33029 1.35237 0.85853 0.79915 0.79606 0.79037 1.18989 1.19768 1.18130 0.93403 0.93747 0.93182 0.92872 0.92278 0.92709 0.93508 0.92275 0.92706 0.91643 0.93529 0.91499 0.94440 0.93361 0.93126 0.93115 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.15 0.37 -1.92 16 2 C -0.12 -2.23 5.92 -26.73 -0.16 -2.39 16 3 C 0.00 0.02 5.39 -27.88 -0.15 -0.13 16 4 C -0.15 -3.67 6.15 -82.96 -0.51 -4.18 16 5 N -0.42 -10.69 9.70 -7.08 -0.07 -10.76 16 6 C -0.17 -4.15 5.86 -13.25 -0.08 -4.23 16 7 C 0.00 -0.01 5.26 -27.89 -0.15 -0.16 16 8 C -0.09 -1.58 2.91 -90.62 -0.26 -1.85 16 9 C -0.14 -2.41 8.99 37.16 0.33 -2.08 16 10 C -0.14 -2.02 9.19 37.16 0.34 -1.68 16 11 S 0.12 2.89 20.23 -107.50 -2.17 0.71 16 12 C 0.00 0.10 6.25 -38.78 -0.24 -0.14 16 13 C -0.37 -9.20 8.93 -38.22 -0.34 -9.54 16 14 H 0.10 2.28 6.94 -52.49 -0.36 1.92 16 15 C 0.05 1.14 5.50 -17.28 -0.09 1.04 16 16 N -0.78 -18.55 10.76 55.56 0.60 -17.96 16 17 Si 0.93 17.36 29.56 -169.99 -5.03 12.33 16 18 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.05 1.15 7.15 -51.93 -0.37 0.78 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.41 6.79 -51.93 -0.35 1.05 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.30 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -26.67 315.00 -9.01 -35.67 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.14 Total: 2.50 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -0.94 Total: -27.25 kcal Atomic # 7 Polarization: -29.24 SS G_CDS: 0.53 Total: -28.71 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.17 Total: 0.71 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.67 -9.01 -35.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082428023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.075 kcal (2) G-P(sol) polarization free energy of solvation -26.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds