Wall clock time and date at job start Mon Mar 30 2020 07:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47384 * 2 1 4 4 C 1.50695 * 109.47095 * 180.02562 * 3 2 1 5 5 N 1.30677 * 123.22134 * 90.02973 * 4 3 2 6 6 C 1.29529 * 117.62898 * 179.97438 * 5 4 3 7 7 C 1.50699 * 124.55956 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47337 * 89.99840 * 7 6 5 9 9 C 1.53006 * 109.47127 * 295.00177 * 8 7 6 10 10 C 1.52997 * 109.47232 * 175.00055 * 8 7 6 11 11 S 1.70883 * 110.87508 * 0.24026 * 6 5 4 12 12 C 1.38586 * 123.22976 * 269.98556 * 4 3 2 13 13 C 1.40046 * 126.25016 * 0.04230 * 12 4 3 14 14 H 1.08002 * 120.00362 * 359.97438 * 13 12 4 15 15 C 1.40070 * 119.99794 * 180.02562 * 13 12 4 16 16 N 1.30861 * 120.00149 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99729 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47319 * 89.99477 * 17 15 13 19 19 H 1.48501 * 109.47006 * 209.99509 * 17 15 13 20 20 H 1.48495 * 109.47433 * 329.99060 * 17 15 13 21 21 H 1.09005 * 109.47618 * 59.99476 * 1 2 3 22 22 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46877 * 299.99875 * 1 2 3 24 24 H 1.08999 * 109.47070 * 240.00251 * 2 1 3 25 25 H 1.08997 * 109.47300 * 120.00413 * 2 1 3 26 26 H 1.08999 * 109.46812 * 60.00093 * 3 2 1 27 27 H 1.08997 * 109.47239 * 300.00450 * 3 2 1 28 28 H 1.09002 * 109.47102 * 329.99630 * 7 6 5 29 29 H 1.09004 * 109.47407 * 209.99851 * 7 6 5 30 30 H 1.09001 * 109.47289 * 55.00130 * 8 7 6 31 31 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 32 32 H 1.08993 * 109.46955 * 60.00011 * 9 8 7 33 33 H 1.09000 * 109.47050 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47140 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47230 * 299.99295 * 10 8 7 36 36 H 1.09001 * 109.47375 * 60.00133 * 10 8 7 37 37 H 0.96999 * 119.99999 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2624 1.4431 -1.0941 6 6 5.5516 1.4435 -0.9684 7 6 6.5229 1.4437 -2.1207 8 6 6.8512 2.8863 -2.5107 9 6 5.5904 3.5700 -3.0439 10 6 7.9300 2.8884 -3.5956 11 16 6.0027 1.4362 0.6798 12 6 4.3069 1.4425 1.1583 13 6 3.8165 1.4418 2.4701 14 1 2.7514 1.4416 2.6485 15 6 4.7076 1.4426 3.5508 16 7 5.9983 1.4434 3.3347 17 14 4.0535 1.4424 5.3006 18 1 3.8810 0.0423 5.7644 19 1 5.0156 2.1431 6.1887 20 1 2.7442 2.1418 5.3397 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 6.0767 0.9297 -2.9721 29 1 7.4377 0.9302 -1.8249 30 1 7.2146 3.4255 -1.6359 31 1 5.2271 3.0308 -3.9187 32 1 4.8219 3.5685 -2.2710 33 1 5.8242 4.5978 -3.3213 34 1 8.1642 3.9161 -3.8731 35 1 8.8282 2.4014 -3.2158 36 1 7.5666 2.3492 -4.4705 37 1 6.6153 1.4435 4.0831 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082428023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:05 Heat of formation + Delta-G solvation = -37.140662 kcal Electronic energy + Delta-G solvation = -16660.954412 eV Core-core repulsion = 14140.930683 eV Total energy + Delta-G solvation = -2520.023730 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.75044 -37.28923 -35.86847 -35.18843 -31.67313 -29.54762 -28.21478 -27.90320 -25.52186 -23.45877 -22.09795 -20.83819 -20.46220 -18.83564 -17.56376 -16.90422 -15.85460 -15.63921 -15.38610 -15.13436 -14.60103 -14.45286 -14.36889 -13.62634 -13.46516 -13.36616 -13.05989 -12.99754 -12.83681 -12.70360 -12.47160 -12.31748 -12.02994 -11.95956 -11.70678 -11.68659 -11.50406 -11.44295 -11.33492 -11.02004 -9.65589 -9.60033 -8.93610 -8.78258 -6.40886 0.71685 1.36428 1.50725 1.53745 1.59224 2.02669 2.21684 2.43191 3.13167 3.93435 4.12954 4.19896 4.23045 4.32190 4.43701 4.54187 4.77219 4.80374 4.85267 4.92855 4.93423 4.95333 5.00089 5.10088 5.14571 5.16353 5.19877 5.26658 5.29041 5.38801 5.54418 5.57671 5.59465 5.63182 5.89925 6.13637 6.53250 6.54982 7.96484 8.04319 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.008103 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.518172 B = 3454.480034 C = 4791.741530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.004 3.996 4 C -0.172 4.172 5 N -0.441 5.441 6 C -0.173 4.173 7 C -0.001 4.001 8 C -0.087 4.087 9 C -0.129 4.129 10 C -0.136 4.136 11 S 0.091 5.909 12 C -0.027 4.027 13 C -0.393 4.393 14 H 0.103 0.897 15 C 0.011 3.989 16 N -0.800 5.800 17 Si 1.006 2.994 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.252 1.252 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 0.687 -2.050 2.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.035 4.035 4 C -0.305 4.305 5 N -0.153 5.153 6 C -0.444 4.444 7 C -0.041 4.041 8 C -0.107 4.107 9 C -0.187 4.187 10 C -0.193 4.193 11 S 0.343 5.657 12 C -0.150 4.150 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.207 4.207 16 N -0.427 5.427 17 Si 0.825 3.175 18 H -0.183 1.183 19 H -0.187 1.187 20 H -0.176 1.176 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.470 0.678 -2.119 2.274 hybrid contribution -0.946 -0.051 0.731 1.197 sum -0.476 0.627 -1.388 1.595 Atomic orbital electron populations 1.21716 0.93924 1.02022 1.02022 1.21380 0.96518 0.96576 1.00075 1.19447 0.88075 0.96353 0.99672 1.20363 0.96694 1.27273 0.86218 1.65100 1.05676 1.11110 1.33403 1.26414 0.93942 1.23775 1.00234 1.19759 0.94559 0.96960 0.92858 1.21057 0.96204 0.95074 0.98323 1.21645 0.97235 0.99706 1.00094 1.21767 0.97455 1.02347 0.97712 1.83865 1.08833 1.74607 0.98411 1.23422 0.94201 0.99189 0.98203 1.19468 0.96110 1.38520 0.88848 0.87926 1.27174 0.94466 0.91958 1.07132 1.69061 1.04131 1.32493 1.36985 0.84785 0.79484 0.79876 0.73380 1.18315 1.18716 1.17565 0.92404 0.91830 0.92240 0.94318 0.93853 0.92626 0.93479 0.92002 0.91679 0.93221 0.92933 0.95384 0.92192 0.91619 0.92130 0.92080 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.35 16 2 C -0.11 -4.15 5.92 30.59 0.18 -3.97 16 3 C 0.00 0.20 5.39 29.85 0.16 0.36 16 4 C -0.17 -8.93 6.15 42.81 0.26 -8.67 16 5 N -0.44 -22.89 9.70 -176.31 -1.71 -24.60 16 6 C -0.17 -8.45 5.86 88.45 0.52 -7.93 16 7 C 0.00 -0.02 5.26 29.85 0.16 0.13 16 8 C -0.09 -2.97 2.91 -10.79 -0.03 -3.00 16 9 C -0.13 -4.53 8.99 71.98 0.65 -3.89 16 10 C -0.14 -3.45 9.19 71.98 0.66 -2.79 16 11 S 0.09 4.65 20.23 -56.49 -1.14 3.51 16 12 C -0.03 -1.46 6.25 22.79 0.14 -1.32 16 13 C -0.39 -19.86 8.93 23.15 0.21 -19.65 16 14 H 0.10 4.89 6.94 -2.91 -0.02 4.87 16 15 C 0.01 0.53 5.50 85.28 0.47 1.00 16 16 N -0.80 -38.50 10.76 21.86 0.24 -38.26 16 17 Si 1.01 34.69 29.56 68.60 2.03 36.72 16 18 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 19 H -0.26 -8.59 7.11 99.48 0.71 -7.89 16 20 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 21 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 2.37 7.15 -2.39 -0.02 2.36 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 1.18 6.79 -2.39 -0.02 1.16 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.31 13.10 8.30 -92.71 -0.77 12.33 16 Total: -1.00 -58.69 315.00 4.53 -54.16 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 1.03 Total: 21.56 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 4.09 Total: -53.08 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -1.47 Total: -62.86 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.14 Total: 3.51 kcal Total: -58.69 4.53 -54.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082428023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.023 kcal (2) G-P(sol) polarization free energy of solvation -58.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds