Wall clock time and date at job start Mon Mar 30 2020 07:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 C 1.50699 * 109.46955 * 180.02562 * 3 2 1 5 5 N 1.29524 * 124.56173 * 90.23549 * 4 3 2 6 6 C 1.30679 * 117.63030 * 180.20049 * 5 4 3 7 7 C 1.50699 * 123.22523 * 179.82259 * 6 5 4 8 8 C 1.52997 * 109.47078 * 239.70788 * 7 6 5 9 9 C 1.52992 * 109.46956 * 119.70476 * 7 6 5 10 10 C 1.53006 * 109.46866 * 359.70611 * 7 6 5 11 11 C 1.38590 * 113.54973 * 359.55580 * 6 5 4 12 12 C 1.40036 * 126.25441 * 180.25405 * 11 6 5 13 13 H 1.07998 * 119.99687 * 359.97438 * 12 11 6 14 14 C 1.40074 * 120.00251 * 180.02562 * 12 11 6 15 15 N 1.30869 * 119.99361 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47556 * 89.99646 * 16 14 12 18 18 H 1.48503 * 109.47095 * 209.99742 * 16 14 12 19 19 H 1.48506 * 109.46754 * 329.99424 * 16 14 12 20 20 S 1.70884 * 124.55850 * 269.97211 * 4 3 2 21 21 H 1.08999 * 109.46828 * 299.99984 * 1 2 3 22 22 H 1.09004 * 109.46939 * 60.00162 * 1 2 3 23 23 H 1.09003 * 109.47389 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46828 * 240.00016 * 2 1 3 25 25 H 1.09004 * 109.46939 * 119.99838 * 2 1 3 26 26 H 1.08993 * 109.47221 * 59.99785 * 3 2 1 27 27 H 1.09003 * 109.46894 * 300.00309 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 29 29 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 31 31 H 1.09001 * 109.47066 * 180.02562 * 9 7 6 32 32 H 1.08996 * 109.47747 * 299.99900 * 9 7 6 33 33 H 1.09002 * 109.47103 * 60.00312 * 9 7 6 34 34 H 1.08993 * 109.46955 * 300.00219 * 10 7 6 35 35 H 1.09000 * 109.47050 * 60.00048 * 10 7 6 36 36 H 1.09001 * 109.47002 * 179.97438 * 10 7 6 37 37 H 0.97000 * 119.99086 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2814 1.4469 -1.0676 6 6 5.5787 1.4422 -0.9104 7 6 6.5500 1.4426 -2.0626 8 6 7.4309 0.1939 -1.9875 9 6 7.4293 2.6924 -1.9878 10 6 5.7757 1.4419 -3.3823 11 6 5.9756 1.4426 0.4174 12 6 7.2947 1.4432 0.8874 13 1 8.1173 1.4429 0.1875 14 6 7.5474 1.4430 2.2652 15 7 6.5506 1.4427 3.1131 16 14 9.3070 1.4445 2.8921 17 1 9.7720 2.8449 3.0586 18 1 9.3670 0.7441 4.2002 19 1 10.1808 0.7454 1.9158 20 16 4.5170 1.4429 1.4063 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 7.9824 0.1944 -1.0474 29 1 8.1331 0.1941 -2.8212 30 1 6.8044 -0.6965 -2.0408 31 1 8.1316 2.6929 -2.8215 32 1 6.8018 3.5820 -2.0414 33 1 7.9808 2.6928 -1.0477 34 1 5.1493 0.5516 -3.4355 35 1 5.1482 2.3315 -3.4358 36 1 6.4783 1.4427 -4.2157 37 1 6.7256 1.4430 4.0672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082438973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:42 Heat of formation + Delta-G solvation = -15.460547 kcal Electronic energy + Delta-G solvation = -17046.636502 eV Core-core repulsion = 14527.552892 eV Total energy + Delta-G solvation = -2519.083609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.30665 -35.38489 -34.10724 -33.65060 -29.55275 -27.79524 -26.32764 -26.07091 -24.33614 -22.32784 -20.96326 -19.12408 -18.27637 -16.96714 -15.64693 -15.06681 -14.28123 -13.95169 -13.51926 -13.44941 -13.00917 -12.92360 -12.60110 -12.06830 -11.92425 -11.52025 -11.46480 -11.40506 -11.28138 -11.10628 -10.80476 -10.78064 -10.57220 -10.44734 -10.39840 -10.01598 -9.95804 -9.75589 -9.70196 -8.88635 -7.73982 -7.66156 -6.99925 -6.97692 -4.51351 2.52436 2.89635 2.94093 3.05886 3.51073 3.65013 4.07334 4.27133 5.00998 5.50120 5.56649 5.66116 5.77562 5.90236 6.03223 6.09650 6.24998 6.33878 6.38218 6.40565 6.43347 6.43562 6.62027 6.66326 6.70232 6.72513 6.78842 6.86584 6.93007 6.96588 7.14620 7.21928 7.31431 7.49727 7.79530 7.99256 8.40478 8.42563 9.78766 9.89208 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.008985 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.239761 B = 3115.589414 C = 4334.421268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.004 4.004 4 C -0.181 4.181 5 N -0.423 5.423 6 C -0.131 4.131 7 C 0.044 3.956 8 C -0.139 4.139 9 C -0.139 4.139 10 C -0.116 4.116 11 C 0.007 3.993 12 C -0.373 4.373 13 H 0.106 0.894 14 C 0.048 3.952 15 N -0.775 5.775 16 Si 0.929 3.071 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.257 1.257 20 S 0.115 5.885 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.032 0.968 37 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 -0.768 -1.575 1.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.044 4.044 4 C -0.450 4.450 5 N -0.135 5.135 6 C -0.266 4.266 7 C 0.041 3.959 8 C -0.197 4.197 9 C -0.197 4.197 10 C -0.174 4.174 11 C -0.116 4.116 12 C -0.409 4.409 13 H 0.123 0.877 14 C -0.173 4.173 15 N -0.402 5.402 16 Si 0.753 3.247 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.181 1.181 20 S 0.367 5.633 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.283 -0.757 -0.798 1.691 hybrid contribution 1.280 -0.007 -0.273 1.309 sum -0.003 -0.765 -1.071 1.316 Atomic orbital electron populations 1.21791 0.96872 1.00750 1.01235 1.21523 0.94071 0.97919 1.01925 1.19535 0.89034 0.95469 1.00404 1.25756 0.98911 1.25829 0.94513 1.64981 1.05324 1.10165 1.33011 1.19611 0.88912 1.26527 0.91516 1.18353 0.92148 0.93864 0.91492 1.21934 0.98914 0.97639 1.01196 1.21933 0.98927 0.97644 1.01181 1.21572 0.98734 1.01722 0.95350 1.22989 0.96729 0.97941 0.93942 1.19337 0.92180 1.37669 0.91757 0.87656 1.26225 1.00709 0.93324 0.97054 1.69032 1.33205 1.33019 1.04921 0.85899 0.80303 0.79643 0.78892 1.18975 1.19773 1.18058 1.84007 0.96643 1.73728 1.08879 0.93130 0.93146 0.93435 0.92310 0.92406 0.92743 0.92359 0.91405 0.94423 0.93760 0.94419 0.93754 0.91424 0.93267 0.93256 0.94871 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.04 5.92 -26.73 -0.16 -2.20 16 3 C 0.00 -0.07 5.79 -27.88 -0.16 -0.23 16 4 C -0.18 -4.36 6.61 -13.25 -0.09 -4.44 16 5 N -0.42 -10.72 9.54 -7.08 -0.07 -10.79 16 6 C -0.13 -3.24 5.52 -82.95 -0.46 -3.70 16 7 C 0.04 0.93 0.75 -155.66 -0.12 0.82 16 8 C -0.14 -2.74 8.25 37.16 0.31 -2.43 16 9 C -0.14 -2.74 8.25 37.15 0.31 -2.43 16 10 C -0.12 -2.28 7.82 37.16 0.29 -1.99 16 11 C 0.01 0.19 6.04 -38.78 -0.23 -0.04 16 12 C -0.37 -9.01 7.25 -38.22 -0.28 -9.28 16 13 H 0.11 2.40 4.21 -52.49 -0.22 2.18 16 14 C 0.05 1.10 5.50 -17.27 -0.09 1.01 16 15 N -0.78 -18.37 10.76 55.56 0.60 -17.78 16 16 Si 0.93 17.16 29.56 -169.99 -5.03 12.13 16 17 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 20 S 0.11 2.86 20.23 -107.50 -2.17 0.68 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.38 5.34 -51.93 -0.28 1.11 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.37 5.35 -51.93 -0.28 1.10 16 34 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 35 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.30 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -26.56 306.18 -8.20 -34.76 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.83 Total: 3.03 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -0.32 Total: -26.65 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: 0.53 Total: -28.56 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.17 Total: 0.68 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.56 -8.20 -34.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082438973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.297 kcal (2) G-P(sol) polarization free energy of solvation -26.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds