Wall clock time and date at job start Mon Mar 30 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 C 1.50699 * 109.46955 * 180.02562 * 3 2 1 5 5 N 1.29524 * 124.56173 * 90.23549 * 4 3 2 6 6 C 1.30679 * 117.63030 * 180.20049 * 5 4 3 7 7 C 1.50699 * 123.22523 * 179.82259 * 6 5 4 8 8 C 1.52997 * 109.47078 * 239.70788 * 7 6 5 9 9 C 1.52992 * 109.46956 * 119.70476 * 7 6 5 10 10 C 1.53006 * 109.46866 * 359.70611 * 7 6 5 11 11 C 1.38590 * 113.54973 * 359.55580 * 6 5 4 12 12 C 1.40036 * 126.25441 * 180.25405 * 11 6 5 13 13 H 1.07998 * 119.99687 * 359.97438 * 12 11 6 14 14 C 1.40074 * 120.00251 * 180.02562 * 12 11 6 15 15 N 1.30869 * 119.99361 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47556 * 89.99646 * 16 14 12 18 18 H 1.48503 * 109.47095 * 209.99742 * 16 14 12 19 19 H 1.48506 * 109.46754 * 329.99424 * 16 14 12 20 20 S 1.70884 * 124.55850 * 269.97211 * 4 3 2 21 21 H 1.08999 * 109.46828 * 299.99984 * 1 2 3 22 22 H 1.09004 * 109.46939 * 60.00162 * 1 2 3 23 23 H 1.09003 * 109.47389 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46828 * 240.00016 * 2 1 3 25 25 H 1.09004 * 109.46939 * 119.99838 * 2 1 3 26 26 H 1.08993 * 109.47221 * 59.99785 * 3 2 1 27 27 H 1.09003 * 109.46894 * 300.00309 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 29 29 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 31 31 H 1.09001 * 109.47066 * 180.02562 * 9 7 6 32 32 H 1.08996 * 109.47747 * 299.99900 * 9 7 6 33 33 H 1.09002 * 109.47103 * 60.00312 * 9 7 6 34 34 H 1.08993 * 109.46955 * 300.00219 * 10 7 6 35 35 H 1.09000 * 109.47050 * 60.00048 * 10 7 6 36 36 H 1.09001 * 109.47002 * 179.97438 * 10 7 6 37 37 H 0.97000 * 119.99086 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2814 1.4469 -1.0676 6 6 5.5787 1.4422 -0.9104 7 6 6.5500 1.4426 -2.0626 8 6 7.4309 0.1939 -1.9875 9 6 7.4293 2.6924 -1.9878 10 6 5.7757 1.4419 -3.3823 11 6 5.9756 1.4426 0.4174 12 6 7.2947 1.4432 0.8874 13 1 8.1173 1.4429 0.1875 14 6 7.5474 1.4430 2.2652 15 7 6.5506 1.4427 3.1131 16 14 9.3070 1.4445 2.8921 17 1 9.7720 2.8449 3.0586 18 1 9.3670 0.7441 4.2002 19 1 10.1808 0.7454 1.9158 20 16 4.5170 1.4429 1.4063 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 7.9824 0.1944 -1.0474 29 1 8.1331 0.1941 -2.8212 30 1 6.8044 -0.6965 -2.0408 31 1 8.1316 2.6929 -2.8215 32 1 6.8018 3.5820 -2.0414 33 1 7.9808 2.6928 -1.0477 34 1 5.1493 0.5516 -3.4355 35 1 5.1482 2.3315 -3.4358 36 1 6.4783 1.4427 -4.2157 37 1 6.7256 1.4430 4.0672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082438973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:41 Heat of formation + Delta-G solvation = -28.263011 kcal Electronic energy + Delta-G solvation = -17047.191658 eV Core-core repulsion = 14527.552892 eV Total energy + Delta-G solvation = -2519.638766 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = -0.63 seconds Orbital eigenvalues (eV) -40.09068 -37.03147 -35.86117 -35.18173 -31.32960 -29.33905 -27.89124 -27.66887 -26.06385 -24.05731 -22.44485 -20.86627 -20.03696 -18.75992 -17.41676 -16.75566 -15.75963 -15.53161 -15.20327 -14.99611 -14.65217 -14.44600 -14.22680 -13.65364 -13.59236 -13.01276 -12.96853 -12.88842 -12.80051 -12.65222 -12.39820 -12.35968 -12.09473 -12.00369 -11.94877 -11.58086 -11.52432 -11.39846 -11.36651 -10.68040 -9.61315 -9.55573 -8.90724 -8.75537 -6.35717 0.74411 1.38011 1.51868 1.54972 1.63506 2.04764 2.23988 2.47432 3.18972 3.95552 4.20298 4.27095 4.30004 4.35231 4.41381 4.63202 4.82635 4.86456 4.87572 4.93955 4.97261 5.00595 5.06186 5.09703 5.11693 5.18472 5.19846 5.33304 5.37442 5.44112 5.50068 5.56302 5.72899 5.80473 5.99080 6.18206 6.57685 6.60348 8.00942 8.06926 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.008985 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.239761 B = 3115.589414 C = 4334.421268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.002 4.002 4 C -0.191 4.191 5 N -0.443 5.443 6 C -0.152 4.152 7 C 0.035 3.965 8 C -0.131 4.131 9 C -0.132 4.132 10 C -0.106 4.106 11 C -0.020 4.020 12 C -0.387 4.387 13 H 0.117 0.883 14 C 0.009 3.991 15 N -0.800 5.800 16 Si 1.000 3.000 17 H -0.259 1.259 18 H -0.266 1.266 19 H -0.249 1.249 20 S 0.083 5.917 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -0.884 -1.920 2.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.043 4.043 4 C -0.461 4.461 5 N -0.154 5.154 6 C -0.286 4.286 7 C 0.033 3.967 8 C -0.189 4.189 9 C -0.189 4.189 10 C -0.164 4.164 11 C -0.143 4.143 12 C -0.423 4.423 13 H 0.134 0.866 14 C -0.210 4.210 15 N -0.427 5.427 16 Si 0.819 3.181 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.172 1.172 20 S 0.335 5.665 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.178 -0.874 -1.155 1.460 hybrid contribution 0.909 0.036 -0.139 0.920 sum 0.731 -0.838 -1.295 1.707 Atomic orbital electron populations 1.21719 0.93550 1.02254 1.02252 1.21425 0.96887 0.95903 1.00521 1.19645 0.86609 0.97161 1.00904 1.26409 1.00633 1.25221 0.93823 1.65069 1.05922 1.11028 1.33429 1.20247 0.89401 1.26426 0.92556 1.18552 0.92092 0.95248 0.90857 1.21844 0.98842 0.96232 1.01976 1.21844 0.98857 0.96209 1.01998 1.21468 0.98869 1.00237 0.95796 1.23368 0.97450 0.99083 0.94416 1.19681 0.91964 1.37708 0.92928 0.86555 1.27203 1.04952 0.92146 0.96669 1.69089 1.35330 1.32590 1.05673 0.84857 0.74859 0.79864 0.78482 1.18391 1.19069 1.17174 1.83905 0.97697 1.74694 1.10167 0.91976 0.92262 0.91717 0.94006 0.93513 0.91729 0.92141 0.92513 0.91094 0.95138 0.91085 0.95114 0.92476 0.94750 0.94707 0.91561 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.11 -3.83 5.92 30.59 0.18 -3.65 16 3 C 0.00 -0.10 5.79 29.85 0.17 0.07 16 4 C -0.19 -9.46 6.61 88.45 0.59 -8.88 16 5 N -0.44 -22.97 9.54 -176.30 -1.68 -24.65 16 6 C -0.15 -7.65 5.52 42.81 0.24 -7.42 16 7 C 0.04 1.47 0.75 -52.93 -0.04 1.43 16 8 C -0.13 -5.00 8.25 71.98 0.59 -4.40 16 9 C -0.13 -4.99 8.25 71.98 0.59 -4.39 16 10 C -0.11 -4.06 7.82 71.98 0.56 -3.50 16 11 C -0.02 -1.05 6.04 22.79 0.14 -0.91 16 12 C -0.39 -18.73 7.25 23.15 0.17 -18.56 16 13 H 0.12 5.24 4.21 -2.91 -0.01 5.22 16 14 C 0.01 0.41 5.50 85.28 0.47 0.88 16 15 N -0.80 -38.12 10.76 21.86 0.24 -37.88 16 16 Si 1.00 34.00 29.56 68.60 2.03 36.03 16 17 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 18 H -0.27 -8.71 7.11 99.48 0.71 -8.01 16 19 H -0.25 -8.07 7.11 99.48 0.71 -7.36 16 20 S 0.08 4.26 20.23 -56.49 -1.14 3.12 16 21 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.26 5.34 -2.39 -0.01 2.25 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.06 2.26 5.35 -2.39 -0.01 2.25 16 34 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 35 H 0.03 1.39 8.13 -2.39 -0.02 1.37 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.30 12.99 8.30 -92.71 -0.77 12.22 16 Total: -1.00 -58.00 306.18 4.85 -53.15 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.04 Total: 22.53 kcal Atomic # 6 Polarization: -56.67 SS G_CDS: 4.37 Total: -52.30 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.45 Total: -62.53 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.03 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.14 Total: 3.12 kcal Total: -58.00 4.85 -53.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082438973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.887 kcal (2) G-P(sol) polarization free energy of solvation -58.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.63 seconds