Wall clock time and date at job start Mon Mar 30 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38420 * 122.53745 * 2 1 4 4 C 1.33400 * 114.91752 * 179.76143 * 3 2 1 5 5 C 1.50695 * 125.20391 * 180.20411 * 4 3 2 6 6 N 1.46905 * 109.46737 * 90.28492 * 5 4 3 7 7 C 1.46907 * 110.99721 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46820 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46878 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47348 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99486 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31505 * 119.99946 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99668 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47176 * 60.00347 * 14 12 10 16 16 H 1.48501 * 109.46659 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47137 * 299.99591 * 14 12 10 18 18 S 1.75884 * 109.59088 * 0.47825 * 4 3 2 19 19 C 1.33392 * 122.53725 * 180.28672 * 2 1 3 20 20 C 1.50692 * 125.20364 * 359.97438 * 19 2 1 21 21 H 1.09002 * 109.47152 * 269.71223 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71324 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71304 * 1 2 3 24 24 H 1.07992 * 122.54494 * 359.97438 * 3 2 1 25 25 H 1.08991 * 109.47652 * 210.28589 * 5 4 3 26 26 H 1.09001 * 109.47325 * 330.29277 * 5 4 3 27 27 H 1.00895 * 111.00013 * 303.95457 * 6 5 4 28 28 H 1.09002 * 109.46985 * 299.99921 * 7 6 5 29 29 H 1.08992 * 109.47317 * 60.00096 * 7 6 5 30 30 H 1.08995 * 109.47401 * 299.99837 * 8 7 6 31 31 H 1.09000 * 109.47320 * 60.00155 * 8 7 6 32 32 H 1.09002 * 109.47107 * 299.99796 * 9 8 7 33 33 H 1.09005 * 109.47317 * 60.00192 * 9 8 7 34 34 H 0.97006 * 120.00122 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.47664 * 89.99824 * 20 19 2 36 36 H 1.09001 * 109.46953 * 209.99984 * 20 19 2 37 37 H 1.09002 * 109.47099 * 329.99597 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5737 0.9900 0.0050 5 6 4.5981 2.0953 0.0105 6 7 4.9304 2.4479 1.3974 7 6 5.9281 3.5253 1.4420 8 6 6.2485 3.8637 2.8993 9 6 7.2881 4.9852 2.9458 10 6 7.6041 5.3182 4.3812 11 1 7.1129 4.7830 5.1803 12 6 8.5203 6.3060 4.6741 13 7 9.1188 6.9573 3.7010 14 14 8.9114 6.7190 6.4535 15 1 9.4522 5.5150 7.1338 16 1 9.9196 7.8084 6.4985 17 1 7.6730 7.1627 7.1423 18 16 3.9386 -0.7305 -0.0037 19 6 2.2245 -1.1245 -0.0056 20 6 1.6537 -2.5191 -0.0121 21 1 -0.3633 -0.0052 1.0277 22 1 -0.3633 -0.8874 -0.5183 23 1 -0.3633 0.8926 -0.5094 24 1 1.7965 2.1463 -0.0004 25 1 5.4979 1.7594 -0.5045 26 1 4.1924 2.9692 -0.4992 27 1 4.1019 2.7012 1.9145 28 1 6.8374 3.1995 0.9367 29 1 5.5314 4.4089 0.9422 30 1 5.3395 4.1892 3.4050 31 1 6.6455 2.9799 3.3988 32 1 8.1971 4.6592 2.4402 33 1 6.8915 5.8692 2.4462 34 1 9.7631 7.6525 3.9071 35 1 1.5156 -2.8506 -1.0412 36 1 2.3399 -3.1949 0.4983 37 1 0.6926 -2.5207 0.5022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083633533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:43 Heat of formation + Delta-G solvation = 1.826221 kcal Electronic energy + Delta-G solvation = -15431.165975 eV Core-core repulsion = 12912.831977 eV Total energy + Delta-G solvation = -2518.333999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.72966 -36.50065 -33.85016 -32.49312 -30.93096 -29.67407 -27.48033 -25.44729 -23.98374 -22.27530 -21.39846 -20.08646 -18.33329 -17.25985 -16.26912 -15.43983 -15.05966 -14.81903 -14.47455 -14.10466 -13.88504 -13.55630 -13.21757 -13.08051 -12.69059 -12.40510 -12.16411 -11.90871 -11.76971 -11.49731 -11.43315 -11.28892 -10.81043 -10.68151 -10.56156 -10.51644 -9.67849 -9.34760 -9.06185 -8.56059 -8.33514 -8.32116 -8.16558 -5.97429 -3.99521 0.91047 1.57899 1.99358 2.58153 3.35607 3.39444 3.42459 4.42207 4.51742 4.69739 4.78570 4.97560 5.10465 5.27094 5.29102 5.35151 5.38314 5.42171 5.49591 5.57370 5.66364 5.77725 5.78481 5.89412 6.11015 6.29815 6.31779 6.48947 6.72305 6.75405 7.14989 7.28997 7.59046 7.70524 7.85599 8.02948 8.46312 9.07473 9.64335 11.14053 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.044768 B = 0.003012 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.300853 B = 9294.741490 C = 9337.714073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.108 4.108 3 C -0.135 4.135 4 C -0.162 4.162 5 C 0.126 3.874 6 N -0.686 5.686 7 C 0.059 3.941 8 C -0.107 4.107 9 C 0.023 3.977 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 S 0.116 5.884 19 C -0.195 4.195 20 C -0.079 4.079 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.135 0.865 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.340 0.660 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.309 -16.038 -10.419 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.166 4.166 4 C -0.280 4.280 5 C -0.005 4.005 6 N -0.317 5.317 7 C -0.070 4.070 8 C -0.145 4.145 9 C -0.015 4.015 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 S 0.382 5.618 19 C -0.313 4.313 20 C -0.138 4.138 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.153 0.847 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.158 0.842 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.322 -17.249 -10.399 24.714 hybrid contribution -1.466 1.994 0.718 2.577 sum -15.788 -15.255 -9.681 23.994 Atomic orbital electron populations 1.20491 0.90134 1.02408 1.02106 1.18730 0.97115 0.91654 1.04499 1.19940 0.92360 0.99225 1.05088 1.24364 0.97510 0.97451 1.08644 1.20372 0.95441 0.93021 0.91647 1.60620 1.15999 1.44115 1.11001 1.22164 0.94465 0.90472 0.99864 1.21624 1.00092 1.00339 0.92415 1.19061 0.93163 0.92299 0.96981 1.21227 1.23320 1.18754 0.92500 0.92709 1.25027 0.96090 0.96217 0.97175 1.69954 1.28083 1.24175 1.31449 0.86649 0.78062 0.77976 0.85273 1.20202 1.21306 1.20268 1.84273 1.04734 1.00030 1.72735 1.24301 0.96370 0.99174 1.11441 1.20284 1.00819 0.90302 1.02369 0.91379 0.91763 0.91653 0.84702 0.90111 0.93499 0.84184 0.91345 0.95569 0.93614 0.92499 0.96562 0.96800 0.92980 0.91065 0.91432 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 9.60 36.01 0.35 -0.37 16 2 C -0.11 -1.14 5.80 -106.25 -0.62 -1.76 16 3 C -0.13 -1.55 9.85 -41.21 -0.41 -1.96 16 4 C -0.16 -2.02 6.02 -36.00 -0.22 -2.23 16 5 C 0.13 1.64 6.18 -4.98 -0.03 1.61 16 6 N -0.69 -10.49 6.49 -115.06 -0.75 -11.23 16 7 C 0.06 1.03 5.69 -3.82 -0.02 1.01 16 8 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 14 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 S 0.12 1.37 23.31 -107.50 -2.51 -1.14 16 19 C -0.20 -2.05 6.50 -36.01 -0.23 -2.29 16 20 C -0.08 -0.60 9.74 36.00 0.35 -0.25 16 21 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.42 7.25 -51.93 -0.38 0.04 16 23 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 24 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.34 4.99 8.72 -39.29 -0.34 4.64 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.48 7.32 -51.93 -0.38 0.10 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -30.86 323.38 -10.32 -41.19 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.14 Total: -2.01 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -1.52 Total: -22.02 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.01 Total: -37.89 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.51 Total: -1.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.86 -10.32 -41.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083633533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.014 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds