Wall clock time and date at job start Mon Mar 30 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38420 * 122.53745 * 2 1 4 4 C 1.33400 * 114.91752 * 179.76143 * 3 2 1 5 5 C 1.50695 * 125.20391 * 180.20411 * 4 3 2 6 6 N 1.46905 * 109.46737 * 90.28492 * 5 4 3 7 7 C 1.46907 * 110.99721 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46820 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46878 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47348 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99486 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31505 * 119.99946 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99668 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47176 * 60.00347 * 14 12 10 16 16 H 1.48501 * 109.46659 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47137 * 299.99591 * 14 12 10 18 18 S 1.75884 * 109.59088 * 0.47825 * 4 3 2 19 19 C 1.33392 * 122.53725 * 180.28672 * 2 1 3 20 20 C 1.50692 * 125.20364 * 359.97438 * 19 2 1 21 21 H 1.09002 * 109.47152 * 269.71223 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71324 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71304 * 1 2 3 24 24 H 1.07992 * 122.54494 * 359.97438 * 3 2 1 25 25 H 1.08991 * 109.47652 * 210.28589 * 5 4 3 26 26 H 1.09001 * 109.47325 * 330.29277 * 5 4 3 27 27 H 1.00895 * 111.00013 * 303.95457 * 6 5 4 28 28 H 1.09002 * 109.46985 * 299.99921 * 7 6 5 29 29 H 1.08992 * 109.47317 * 60.00096 * 7 6 5 30 30 H 1.08995 * 109.47401 * 299.99837 * 8 7 6 31 31 H 1.09000 * 109.47320 * 60.00155 * 8 7 6 32 32 H 1.09002 * 109.47107 * 299.99796 * 9 8 7 33 33 H 1.09005 * 109.47317 * 60.00192 * 9 8 7 34 34 H 0.97006 * 120.00122 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.47664 * 89.99824 * 20 19 2 36 36 H 1.09001 * 109.46953 * 209.99984 * 20 19 2 37 37 H 1.09002 * 109.47099 * 329.99597 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5737 0.9900 0.0050 5 6 4.5981 2.0953 0.0105 6 7 4.9304 2.4479 1.3974 7 6 5.9281 3.5253 1.4420 8 6 6.2485 3.8637 2.8993 9 6 7.2881 4.9852 2.9458 10 6 7.6041 5.3182 4.3812 11 1 7.1129 4.7830 5.1803 12 6 8.5203 6.3060 4.6741 13 7 9.1188 6.9573 3.7010 14 14 8.9114 6.7190 6.4535 15 1 9.4522 5.5150 7.1338 16 1 9.9196 7.8084 6.4985 17 1 7.6730 7.1627 7.1423 18 16 3.9386 -0.7305 -0.0037 19 6 2.2245 -1.1245 -0.0056 20 6 1.6537 -2.5191 -0.0121 21 1 -0.3633 -0.0052 1.0277 22 1 -0.3633 -0.8874 -0.5183 23 1 -0.3633 0.8926 -0.5094 24 1 1.7965 2.1463 -0.0004 25 1 5.4979 1.7594 -0.5045 26 1 4.1924 2.9692 -0.4992 27 1 4.1019 2.7012 1.9145 28 1 6.8374 3.1995 0.9367 29 1 5.5314 4.4089 0.9422 30 1 5.3395 4.1892 3.4050 31 1 6.6455 2.9799 3.3988 32 1 8.1971 4.6592 2.4402 33 1 6.8915 5.8692 2.4462 34 1 9.7631 7.6525 3.9071 35 1 1.5156 -2.8506 -1.0412 36 1 2.3399 -3.1949 0.4983 37 1 0.6926 -2.5207 0.5022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083633533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:43 Heat of formation + Delta-G solvation = -15.929931 kcal Electronic energy + Delta-G solvation = -15431.935940 eV Core-core repulsion = 12912.831977 eV Total energy + Delta-G solvation = -2519.103963 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57219 -37.81288 -35.65223 -33.95034 -32.38205 -30.44017 -28.86397 -26.91924 -25.00101 -23.94293 -22.40326 -21.79820 -19.13500 -18.53252 -18.11924 -16.72302 -16.58017 -16.03760 -15.78130 -15.23644 -15.06336 -14.57148 -14.37838 -14.02241 -13.69607 -13.62594 -13.47058 -13.17977 -13.04595 -12.71143 -12.57918 -12.46990 -12.38450 -12.29757 -12.18884 -11.57049 -11.50751 -11.40387 -11.13861 -10.55581 -9.55905 -9.29441 -9.17287 -8.20749 -6.31990 0.04911 0.72261 1.14021 1.39610 1.43037 1.50977 1.74686 2.40772 3.12256 3.27248 3.80550 4.01256 4.13796 4.24091 4.33514 4.36109 4.49961 4.62418 4.68291 4.70306 4.74722 4.79278 4.87317 4.95343 5.07025 5.10432 5.14008 5.21599 5.25760 5.50282 5.52121 5.71681 5.73711 5.84792 5.95613 6.25809 6.38327 6.84656 7.37242 8.91051 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.044768 B = 0.003012 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.300853 B = 9294.741490 C = 9337.714073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.122 4.122 3 C -0.132 4.132 4 C -0.183 4.183 5 C 0.130 3.870 6 N -0.689 5.689 7 C 0.072 3.928 8 C -0.092 4.092 9 C 0.026 3.974 10 C -0.546 4.546 11 H 0.059 0.941 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.266 1.266 18 S 0.086 5.914 19 C -0.191 4.191 20 C -0.081 4.081 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.146 0.854 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.345 0.655 28 H 0.063 0.937 29 H 0.029 0.971 30 H 0.051 0.949 31 H 0.050 0.950 32 H -0.009 1.009 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.952 -16.898 -9.821 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.163 4.163 4 C -0.300 4.300 5 C 0.000 4.000 6 N -0.320 5.320 7 C -0.056 4.056 8 C -0.130 4.130 9 C -0.012 4.012 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.191 1.191 18 S 0.352 5.648 19 C -0.308 4.308 20 C -0.139 4.139 21 H 0.092 0.908 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.164 0.836 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.163 0.837 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.010 0.990 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.982 -18.125 -9.807 26.079 hybrid contribution -1.002 2.224 0.481 2.486 sum -16.984 -15.901 -9.327 25.065 Atomic orbital electron populations 1.20545 0.88023 1.03531 1.02804 1.19072 0.98680 0.91223 1.04408 1.20212 0.92146 1.00243 1.03733 1.24278 0.97739 0.97272 1.10727 1.20323 0.95783 0.93749 0.90154 1.60523 1.15923 1.42789 1.12797 1.21857 0.95199 0.91437 0.97156 1.21371 0.98579 0.98052 0.95023 1.18960 0.93498 0.93161 0.95540 1.21682 1.23769 1.19200 0.93738 0.92291 1.25996 0.95764 0.95949 1.02170 1.70086 1.28638 1.24716 1.33969 0.85489 0.78228 0.78012 0.79263 1.19214 1.20695 1.19090 1.84330 1.06777 1.00261 1.73427 1.24708 0.95149 1.00683 1.10284 1.20414 1.01411 0.88547 1.03536 0.90786 0.90317 0.90951 0.83633 0.90403 0.92475 0.83654 0.91818 0.95249 0.93052 0.93084 0.99013 0.98904 0.92715 0.89690 0.91115 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.60 71.24 0.68 -0.48 16 2 C -0.12 -2.35 5.80 -20.92 -0.12 -2.47 16 3 C -0.13 -2.84 9.85 21.22 0.21 -2.63 16 4 C -0.18 -4.41 6.02 24.59 0.15 -4.26 16 5 C 0.13 3.32 6.18 85.55 0.53 3.85 16 6 N -0.69 -20.62 6.49 -517.92 -3.36 -23.98 16 7 C 0.07 2.54 5.69 86.30 0.49 3.03 16 8 C -0.09 -3.93 5.41 30.59 0.17 -3.77 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.55 -31.94 9.11 25.60 0.23 -31.70 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 13 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 14 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 S 0.09 1.99 23.31 -56.49 -1.32 0.67 16 19 C -0.19 -3.69 6.50 24.59 0.16 -3.53 16 20 C -0.08 -1.03 9.74 71.23 0.69 -0.33 16 21 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.08 0.79 7.25 -2.39 -0.02 0.77 16 23 H 0.07 0.83 8.13 -2.38 -0.02 0.82 16 24 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.35 9.77 8.72 -89.70 -0.78 8.99 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 34 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.89 7.32 -2.39 -0.02 0.87 16 Total: -1.00 -65.86 323.38 1.69 -64.17 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.25 Total: 9.98 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 3.80 Total: -40.34 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.08 Total: -81.49 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.32 Total: 0.67 kcal Total: -65.86 1.69 -64.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083633533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.242 kcal (2) G-P(sol) polarization free energy of solvation -65.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds