Wall clock time and date at job start Mon Mar 30 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99978 * 2 1 4 4 H 1.48501 * 109.46700 * 270.00095 * 3 2 1 5 5 H 1.48492 * 109.46868 * 29.99737 * 3 2 1 6 6 H 1.48493 * 109.47045 * 150.00308 * 3 2 1 7 7 C 1.37878 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00374 * 187.73461 * 7 2 1 9 9 C 1.50703 * 119.99715 * 7.74004 * 7 2 1 10 10 C 1.53004 * 115.54774 * 275.27753 * 9 7 2 11 11 N 1.46498 * 109.46949 * 279.19425 * 10 9 7 12 12 C 1.39996 * 119.99774 * 184.89564 * 11 10 9 13 13 C 1.38792 * 120.05711 * 354.97364 * 12 11 10 14 14 C 1.38164 * 119.97630 * 179.97438 * 13 12 11 15 15 C 1.38459 * 120.08423 * 0.27129 * 14 13 12 16 16 F 1.35098 * 119.94284 * 179.72212 * 15 14 13 17 17 C 1.38462 * 120.11008 * 359.45669 * 15 14 13 18 18 C 1.38289 * 120.02606 * 0.54668 * 17 15 14 19 19 F 1.35101 * 120.04787 * 179.70247 * 18 17 15 20 20 C 1.53001 * 117.52047 * 60.97254 * 9 7 2 21 21 C 1.52993 * 117.50442 * 129.60725 * 9 7 2 22 22 H 0.96999 * 120.00132 * 5.00741 * 1 2 3 23 23 H 1.08996 * 109.47296 * 159.18635 * 10 9 7 24 24 H 1.08999 * 109.46962 * 39.19025 * 10 9 7 25 25 H 0.96997 * 120.00113 * 4.88738 * 11 10 9 26 26 H 1.08004 * 120.01049 * 359.96426 * 13 12 11 27 27 H 1.07997 * 119.95994 * 180.02562 * 14 13 12 28 28 H 1.08004 * 119.98846 * 180.26749 * 17 15 14 29 29 H 1.09000 * 117.50140 * 214.97117 * 20 9 7 30 30 H 1.08999 * 117.50059 * 359.97438 * 20 9 7 31 31 H 1.09005 * 117.49846 * 359.97292 * 21 9 7 32 32 H 1.08998 * 117.50337 * 144.97006 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0772 -1.1982 0.1264 9 6 1.2614 -2.4933 -0.1747 10 6 0.6662 -3.0904 1.1022 11 7 1.7117 -3.8014 1.8421 12 6 1.3852 -4.5208 2.9979 13 6 0.0930 -4.4764 3.5025 14 6 -0.2275 -5.1875 4.6430 15 6 0.7402 -5.9400 5.2866 16 9 0.4251 -6.6297 6.4047 17 6 2.0290 -5.9914 4.7830 18 6 2.3549 -5.2814 3.6419 19 9 3.6138 -5.3264 3.1536 20 6 0.4835 -2.6927 -1.4770 21 6 1.7807 -3.4670 -1.2343 22 1 -0.4850 0.8368 -0.0733 23 1 -0.1311 -3.7860 0.8406 24 1 0.2617 -2.2909 1.7228 25 1 2.6301 -3.7739 1.5312 26 1 -0.6616 -3.8861 3.0040 27 1 -1.2331 -5.1530 5.0352 28 1 2.7813 -6.5825 5.2842 29 1 -0.4521 -3.2494 -1.4242 30 1 0.5088 -1.8840 -2.2073 31 1 2.6598 -3.1676 -1.8052 32 1 1.6988 -4.5329 -1.0218 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:42 Heat of formation + Delta-G solvation = -57.423419 kcal Electronic energy + Delta-G solvation = -18019.174080 eV Core-core repulsion = 14808.597343 eV Total energy + Delta-G solvation = -3210.576737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.83121 -49.72874 -40.14832 -38.61790 -35.59213 -33.99552 -31.71062 -30.11182 -27.76055 -26.65976 -23.98328 -23.13484 -22.64856 -21.08845 -19.18888 -18.61358 -17.89242 -17.62056 -16.88860 -16.67613 -16.59325 -16.15323 -15.85840 -15.49732 -15.26491 -15.14882 -14.46231 -14.30248 -13.85262 -13.49992 -13.12511 -13.05123 -12.93979 -12.76081 -12.38747 -12.24577 -12.04367 -11.47502 -11.08224 -10.61171 -10.47448 -10.09092 -9.96977 -8.27342 -8.14282 -6.24889 0.09769 0.29560 1.39809 1.43380 1.50442 2.40040 2.44535 2.54683 3.06962 3.15377 3.51247 3.52842 3.72358 3.99314 4.18397 4.28874 4.53714 4.57019 4.60777 4.77527 4.89801 4.96184 4.98464 5.05246 5.12768 5.22702 5.24904 5.60259 5.62169 5.75398 5.81375 6.31220 6.37164 6.74692 6.84090 7.44255 8.93703 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.005346 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.508849 B = 5235.872132 C = 5342.762778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.033 3.967 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.049 0.951 9 C 0.003 3.997 10 C 0.183 3.817 11 N -0.723 5.723 12 C 0.181 3.819 13 C -0.160 4.160 14 C -0.095 4.095 15 C 0.042 3.958 16 F -0.143 7.143 17 C -0.132 4.132 18 C 0.020 3.980 19 F -0.145 7.145 20 C -0.153 4.153 21 C -0.184 4.184 22 H 0.261 0.739 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.401 0.599 26 H 0.142 0.858 27 H 0.164 0.836 28 H 0.161 0.839 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -10.053 6.953 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.169 4.169 3 Si 0.768 3.232 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.003 3.997 10 C 0.059 3.941 11 N -0.349 5.349 12 C 0.073 3.927 13 C -0.183 4.183 14 C -0.114 4.114 15 C 0.021 3.979 16 F -0.122 7.122 17 C -0.152 4.152 18 C -0.005 4.005 19 F -0.124 7.124 20 C -0.191 4.191 21 C -0.221 4.221 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.236 0.764 26 H 0.160 0.840 27 H 0.181 0.819 28 H 0.179 0.821 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.288 -9.823 6.910 12.013 hybrid contribution 0.929 1.107 -0.296 1.475 sum 0.640 -8.715 6.614 10.959 Atomic orbital electron populations 1.70074 1.06740 1.27537 1.49382 1.25535 0.95487 1.01469 0.94365 0.85816 0.78858 0.80429 0.78108 1.20266 1.21158 1.19830 1.20654 0.92842 0.90462 1.50750 0.93251 1.19085 0.99572 0.94126 0.86953 1.20764 0.88314 0.92649 0.92335 1.44902 1.11518 1.53182 1.25263 1.18290 0.93977 0.92057 0.88374 1.20563 0.94652 1.04401 0.98657 1.21151 1.00425 0.95306 0.94523 1.17030 0.93617 0.99929 0.87339 1.91464 1.93360 1.77900 1.49475 1.20879 0.97236 1.01347 0.95707 1.16855 0.79706 1.05689 0.98211 1.91433 1.37619 1.95664 1.87676 1.22470 0.93998 1.01066 1.01529 1.22935 0.97409 0.96388 1.05352 0.92978 0.93336 0.93996 0.76420 0.83980 0.81889 0.82130 0.90204 0.92002 0.90387 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.48 12.99 21.45 0.28 -48.20 16 2 C 0.03 1.70 5.38 84.66 0.46 2.16 16 3 Si 0.94 41.94 29.55 68.60 2.03 43.97 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.51 -26.17 8.82 25.60 0.23 -25.95 16 8 H 0.05 2.57 7.83 -2.91 -0.02 2.55 16 9 C 0.00 0.15 1.33 -52.93 -0.07 0.08 16 10 C 0.18 7.45 4.82 86.38 0.42 7.86 16 11 N -0.72 -26.40 5.69 -339.11 -1.93 -28.33 16 12 C 0.18 5.85 6.66 38.17 0.25 6.11 16 13 C -0.16 -4.56 9.30 22.38 0.21 -4.36 16 14 C -0.09 -2.28 10.02 22.30 0.22 -2.06 16 15 C 0.04 1.06 7.30 22.38 0.16 1.23 16 16 F -0.14 -3.52 17.26 44.97 0.78 -2.74 16 17 C -0.13 -3.37 10.00 22.34 0.22 -3.15 16 18 C 0.02 0.59 7.31 22.48 0.16 0.76 16 19 F -0.14 -4.59 16.65 44.97 0.75 -3.84 16 20 C -0.15 -6.58 9.45 30.60 0.29 -6.29 16 21 C -0.18 -7.22 9.91 30.59 0.30 -6.92 16 22 H 0.26 13.53 8.32 -92.71 -0.77 12.76 16 23 H 0.05 1.83 7.71 -2.39 -0.02 1.81 16 24 H 0.04 1.93 7.97 -2.39 -0.02 1.91 16 25 H 0.40 14.98 7.98 -92.71 -0.74 14.24 16 26 H 0.14 4.05 6.76 -2.91 -0.02 4.03 16 27 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 28 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.08 3.16 8.08 -2.39 -0.02 3.14 16 30 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 32 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -53.75 288.92 5.16 -48.59 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.41 Total: 21.07 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 2.86 Total: -30.52 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.65 Total: -76.53 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 1.53 Total: -6.58 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -53.75 5.16 -48.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.835 kcal (2) G-P(sol) polarization free energy of solvation -53.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds