Wall clock time and date at job start Mon Mar 30 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 N 1.46906 * 109.46808 * 305.11925 * 3 2 1 5 5 C 1.50705 * 109.47030 * 185.12331 * 3 2 1 6 6 H 1.08001 * 119.99608 * 242.19088 * 5 3 2 7 7 C 1.37875 * 119.99934 * 62.19100 * 5 3 2 8 8 N 1.31515 * 120.00264 * 0.55290 * 7 5 3 9 9 Si 1.86806 * 119.99641 * 180.82772 * 7 5 3 10 10 H 1.48497 * 109.47143 * 269.72488 * 9 7 5 11 11 H 1.48494 * 109.47187 * 29.72543 * 9 7 5 12 12 H 1.48500 * 109.46795 * 149.72722 * 9 7 5 13 13 C 1.50697 * 109.47462 * 65.12126 * 3 2 1 14 14 C 1.38178 * 120.01371 * 245.03052 * 13 3 2 15 15 C 1.38430 * 120.02943 * 179.78858 * 14 13 3 16 16 F 1.35098 * 119.97328 * 180.23071 * 15 14 13 17 17 C 1.38483 * 120.05819 * 0.46371 * 15 14 13 18 18 C 1.38130 * 120.03074 * 359.79056 * 17 15 14 19 19 C 1.38683 * 120.01453 * 65.30192 * 13 3 2 20 20 O 1.35940 * 120.03052 * 359.95843 * 19 13 3 21 21 C 1.42901 * 117.00134 * 179.97438 * 20 19 13 22 22 H 1.09000 * 109.47001 * 64.64809 * 1 2 3 23 23 H 1.09001 * 109.47034 * 184.64145 * 1 2 3 24 24 H 1.08999 * 109.47708 * 304.64471 * 1 2 3 25 25 H 1.09001 * 109.47429 * 239.99532 * 2 1 3 26 26 H 1.08998 * 109.47267 * 119.99479 * 2 1 3 27 27 H 1.00901 * 110.99625 * 186.80446 * 4 3 2 28 28 H 1.00894 * 110.99955 * 310.76147 * 4 3 2 29 29 H 0.96996 * 119.99811 * 354.73920 * 8 7 5 30 30 H 1.08002 * 119.98503 * 359.97438 * 14 13 3 31 31 H 1.08004 * 119.98442 * 179.76667 * 17 15 14 32 32 H 1.08001 * 120.01398 * 179.97438 * 18 17 15 33 33 H 1.09001 * 109.47042 * 60.00051 * 21 20 19 34 34 H 1.08994 * 109.47340 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.47205 * 300.00610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4519 2.1697 -1.1329 5 6 3.5416 1.4444 -0.1269 6 1 4.1499 1.8566 0.6647 7 6 4.1389 0.9199 -1.2534 8 7 3.3979 0.4278 -2.2221 9 14 6.0011 0.9013 -1.4004 10 1 6.4588 2.1550 -2.0515 11 1 6.6035 0.7978 -0.0471 12 1 6.4212 -0.2638 -2.2197 13 6 1.6439 2.1154 1.2889 14 6 0.7600 3.1774 1.2710 15 6 0.3925 3.7929 2.4552 16 9 -0.4753 4.8281 2.4368 17 6 0.9175 3.3517 3.6583 18 6 1.8053 2.2937 3.6786 19 6 2.1707 1.6727 2.4930 20 8 3.0439 0.6311 2.5115 21 6 3.5470 0.2288 3.7872 22 1 -0.3633 0.4400 -0.9287 23 1 -0.3633 -1.0243 0.0832 24 1 -0.3634 0.5842 0.8454 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.8563 3.0899 -1.2210 28 1 1.5529 1.6468 -1.9899 29 1 2.4363 0.3638 -2.1123 30 1 0.3533 3.5254 0.3329 31 1 0.6329 3.8352 4.5812 32 1 2.2149 1.9500 4.6170 33 1 2.7172 -0.0732 4.4262 34 1 4.2318 -0.6095 3.6598 35 1 4.0759 1.0628 4.2486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084420284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:12 Heat of formation + Delta-G solvation = -49.963465 kcal Electronic energy + Delta-G solvation = -19718.131599 eV Core-core repulsion = 16631.338655 eV Total energy + Delta-G solvation = -3086.792944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.34010 -39.82053 -37.12036 -35.97977 -31.83951 -30.38565 -29.46535 -29.14379 -26.70702 -25.97444 -23.24064 -22.01631 -21.55273 -19.12467 -17.75746 -17.29997 -16.39622 -16.04079 -15.32222 -14.92991 -14.83401 -14.19940 -13.90958 -13.78083 -13.40646 -12.99371 -12.50720 -12.38257 -12.12609 -11.91369 -11.75080 -11.43397 -11.32397 -10.96337 -10.58797 -10.46665 -10.39617 -10.15030 -9.86512 -9.66284 -9.28060 -8.57093 -8.28845 -7.48475 -7.18860 -6.25586 -4.14908 1.75538 1.80473 3.38977 3.42500 3.58448 3.86499 4.16332 4.47863 4.80176 5.11398 5.20261 5.32496 5.39779 5.46333 5.62699 5.77818 5.83583 6.07557 6.14808 6.24609 6.25229 6.44836 6.48400 6.63408 6.72553 6.85883 6.91985 7.14324 7.29397 7.35354 7.50065 7.94788 8.01323 8.30868 8.60254 8.70139 8.85968 9.52851 10.94274 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020661 B = 0.009010 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.880631 B = 3106.763004 C = 3533.513398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.263 3.737 4 N -0.853 5.853 5 C -0.592 4.592 6 H 0.052 0.948 7 C 0.027 3.973 8 N -0.921 5.921 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.290 1.290 12 H -0.286 1.286 13 C -0.026 4.026 14 C -0.111 4.111 15 C 0.044 3.956 16 F -0.152 7.152 17 C -0.139 4.139 18 C -0.197 4.197 19 C 0.127 3.873 20 O -0.275 6.275 21 C 0.022 3.978 22 H 0.055 0.945 23 H 0.029 0.971 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.325 0.675 28 H 0.342 0.658 29 H 0.276 0.724 30 H 0.148 0.852 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 1.341 9.659 10.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C 0.172 3.828 4 N -0.384 5.384 5 C -0.632 4.632 6 H 0.070 0.930 7 C -0.176 4.176 8 N -0.564 5.564 9 Si 0.897 3.103 10 H -0.217 1.217 11 H -0.216 1.216 12 H -0.211 1.211 13 C -0.028 4.028 14 C -0.130 4.130 15 C 0.025 3.975 16 F -0.131 7.131 17 C -0.158 4.158 18 C -0.216 4.216 19 C 0.080 3.920 20 O -0.187 6.187 21 C -0.074 4.074 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.135 0.865 28 H 0.159 0.841 29 H 0.093 0.907 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.913 0.781 8.862 9.100 hybrid contribution -0.311 0.641 1.170 1.370 sum -2.224 1.422 10.032 10.374 Atomic orbital electron populations 1.21729 0.97951 0.98712 1.01408 1.21718 0.93143 0.97905 1.02450 1.17346 0.92401 0.88953 0.84089 1.59506 1.63183 1.06988 1.08750 1.22454 0.91075 1.42906 1.06802 0.92972 1.25681 1.06683 0.93053 0.92229 1.70919 1.08227 1.44250 1.33011 0.83561 0.74669 0.76653 0.75451 1.21682 1.21585 1.21139 1.19532 0.93966 0.94785 0.94494 1.21013 0.98386 0.96232 0.97324 1.17645 0.95243 0.89678 0.94905 1.91416 1.67808 1.56436 1.97457 1.20632 0.99775 0.98804 0.96560 1.20927 1.03337 0.99982 0.97335 1.18906 0.90943 0.88938 0.93169 1.86509 1.56996 1.46039 1.29165 1.23002 0.98520 1.00243 0.85602 0.92608 0.95182 0.94129 0.90895 0.92482 0.86467 0.84146 0.90732 0.83405 0.85783 0.85506 0.93583 0.88731 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.50 37.16 0.35 -2.46 16 2 C -0.11 -2.59 4.65 -26.73 -0.12 -2.71 16 3 C 0.26 6.10 0.35 -133.90 -0.05 6.05 16 4 N -0.85 -18.91 6.49 -1.13 -0.01 -18.92 16 5 C -0.59 -15.41 6.91 -34.44 -0.24 -15.65 16 6 H 0.05 1.42 7.05 -52.49 -0.37 1.05 16 7 C 0.03 0.72 5.21 -17.82 -0.09 0.63 16 8 N -0.92 -25.38 12.57 55.43 0.70 -24.68 16 9 Si 1.07 24.44 29.90 -169.99 -5.08 19.36 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 C -0.03 -0.56 3.69 -104.48 -0.39 -0.95 16 14 C -0.11 -2.19 9.17 -39.53 -0.36 -2.55 16 15 C 0.04 0.81 7.30 -39.42 -0.29 0.52 16 16 F -0.15 -2.70 17.27 2.25 0.04 -2.66 16 17 C -0.14 -2.27 10.02 -39.53 -0.40 -2.66 16 18 C -0.20 -3.27 9.04 -39.44 -0.36 -3.63 16 19 C 0.13 2.51 6.08 -39.24 -0.24 2.27 16 20 O -0.28 -5.45 7.05 -19.55 -0.14 -5.59 16 21 C 0.02 0.31 9.81 101.05 0.99 1.30 16 22 H 0.05 1.11 7.64 -51.93 -0.40 0.71 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.80 7.19 -51.93 -0.37 0.43 16 25 H 0.07 1.83 5.40 -51.93 -0.28 1.54 16 26 H 0.06 1.32 6.47 -51.93 -0.34 0.99 16 27 H 0.33 7.20 8.62 -39.29 -0.34 6.86 16 28 H 0.34 8.03 6.05 -39.29 -0.24 7.79 16 29 H 0.28 7.37 3.37 -40.82 -0.14 7.23 16 30 H 0.15 2.90 6.79 -52.49 -0.36 2.54 16 31 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.13 1.71 6.30 -52.49 -0.33 1.38 16 33 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 LS Contribution 280.87 15.07 4.23 4.23 Total: -1.00 -27.93 280.87 -5.46 -33.40 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -4.02 Total: 14.70 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.18 Total: -19.84 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.69 Total: -43.60 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.14 Total: -5.59 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.93 -5.46 -33.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084420284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.567 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds