Wall clock time and date at job start Mon Mar 30 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 N 1.46906 * 109.46808 * 305.11925 * 3 2 1 5 5 C 1.50705 * 109.47030 * 185.12331 * 3 2 1 6 6 H 1.08001 * 119.99608 * 242.19088 * 5 3 2 7 7 C 1.37875 * 119.99934 * 62.19100 * 5 3 2 8 8 N 1.31515 * 120.00264 * 0.55290 * 7 5 3 9 9 Si 1.86806 * 119.99641 * 180.82772 * 7 5 3 10 10 H 1.48497 * 109.47143 * 269.72488 * 9 7 5 11 11 H 1.48494 * 109.47187 * 29.72543 * 9 7 5 12 12 H 1.48500 * 109.46795 * 149.72722 * 9 7 5 13 13 C 1.50697 * 109.47462 * 65.12126 * 3 2 1 14 14 C 1.38178 * 120.01371 * 245.03052 * 13 3 2 15 15 C 1.38430 * 120.02943 * 179.78858 * 14 13 3 16 16 F 1.35098 * 119.97328 * 180.23071 * 15 14 13 17 17 C 1.38483 * 120.05819 * 0.46371 * 15 14 13 18 18 C 1.38130 * 120.03074 * 359.79056 * 17 15 14 19 19 C 1.38683 * 120.01453 * 65.30192 * 13 3 2 20 20 O 1.35940 * 120.03052 * 359.95843 * 19 13 3 21 21 C 1.42901 * 117.00134 * 179.97438 * 20 19 13 22 22 H 1.09000 * 109.47001 * 64.64809 * 1 2 3 23 23 H 1.09001 * 109.47034 * 184.64145 * 1 2 3 24 24 H 1.08999 * 109.47708 * 304.64471 * 1 2 3 25 25 H 1.09001 * 109.47429 * 239.99532 * 2 1 3 26 26 H 1.08998 * 109.47267 * 119.99479 * 2 1 3 27 27 H 1.00901 * 110.99625 * 186.80446 * 4 3 2 28 28 H 1.00894 * 110.99955 * 310.76147 * 4 3 2 29 29 H 0.96996 * 119.99811 * 354.73920 * 8 7 5 30 30 H 1.08002 * 119.98503 * 359.97438 * 14 13 3 31 31 H 1.08004 * 119.98442 * 179.76667 * 17 15 14 32 32 H 1.08001 * 120.01398 * 179.97438 * 18 17 15 33 33 H 1.09001 * 109.47042 * 60.00051 * 21 20 19 34 34 H 1.08994 * 109.47340 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.47205 * 300.00610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4519 2.1697 -1.1329 5 6 3.5416 1.4444 -0.1269 6 1 4.1499 1.8566 0.6647 7 6 4.1389 0.9199 -1.2534 8 7 3.3979 0.4278 -2.2221 9 14 6.0011 0.9013 -1.4004 10 1 6.4588 2.1550 -2.0515 11 1 6.6035 0.7978 -0.0471 12 1 6.4212 -0.2638 -2.2197 13 6 1.6439 2.1154 1.2889 14 6 0.7600 3.1774 1.2710 15 6 0.3925 3.7929 2.4552 16 9 -0.4753 4.8281 2.4368 17 6 0.9175 3.3517 3.6583 18 6 1.8053 2.2937 3.6786 19 6 2.1707 1.6727 2.4930 20 8 3.0439 0.6311 2.5115 21 6 3.5470 0.2288 3.7872 22 1 -0.3633 0.4400 -0.9287 23 1 -0.3633 -1.0243 0.0832 24 1 -0.3634 0.5842 0.8454 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.8563 3.0899 -1.2210 28 1 1.5529 1.6468 -1.9899 29 1 2.4363 0.3638 -2.1123 30 1 0.3533 3.5254 0.3329 31 1 0.6329 3.8352 4.5812 32 1 2.2149 1.9500 4.6170 33 1 2.7172 -0.0732 4.4262 34 1 4.2318 -0.6095 3.6598 35 1 4.0759 1.0628 4.2486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084420284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:12 Heat of formation + Delta-G solvation = -66.506874 kcal Electronic energy + Delta-G solvation = -19718.848975 eV Core-core repulsion = 16631.338655 eV Total energy + Delta-G solvation = -3087.510320 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -49.72883 -41.26675 -38.69260 -37.52778 -33.70562 -31.98618 -31.09571 -30.57952 -27.89884 -27.80006 -25.04825 -23.56213 -22.94494 -20.81083 -19.54535 -18.74978 -17.86141 -17.53000 -16.72259 -16.55068 -16.24095 -15.70287 -15.49509 -15.23833 -15.04453 -14.68724 -14.09889 -13.82522 -13.77129 -13.46818 -13.25500 -13.02611 -12.79063 -12.58341 -12.36015 -12.03353 -11.88223 -11.83823 -11.57144 -11.34691 -11.08548 -10.48083 -9.81180 -9.18461 -8.81305 -8.27795 -6.21063 0.34896 0.38813 1.53012 1.59192 1.77090 2.56971 2.59679 2.75276 3.24097 3.42528 3.80834 3.93112 4.14703 4.28861 4.34735 4.45721 4.47395 4.50438 4.62500 4.73821 4.75809 4.87811 5.01113 5.17940 5.23948 5.25964 5.29566 5.50244 5.53826 5.70102 5.92691 6.03132 6.26660 6.65600 6.70642 6.76889 6.94495 7.51630 8.89282 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020661 B = 0.009010 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.880631 B = 3106.763004 C = 3533.513398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 C 0.261 3.739 4 N -0.839 5.839 5 C -0.592 4.592 6 H 0.034 0.966 7 C -0.016 4.016 8 N -0.945 5.945 9 Si 1.105 2.895 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.288 1.288 13 C -0.059 4.059 14 C -0.119 4.119 15 C 0.035 3.965 16 F -0.151 7.151 17 C -0.123 4.123 18 C -0.186 4.186 19 C 0.113 3.887 20 O -0.311 6.311 21 C 0.012 3.988 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.323 0.677 28 H 0.333 0.667 29 H 0.273 0.727 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 1.727 11.970 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.170 3.830 4 N -0.369 5.369 5 C -0.632 4.632 6 H 0.053 0.947 7 C -0.215 4.215 8 N -0.588 5.588 9 Si 0.931 3.069 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.214 1.214 13 C -0.061 4.061 14 C -0.138 4.138 15 C 0.016 3.984 16 F -0.130 7.130 17 C -0.142 4.142 18 C -0.204 4.204 19 C 0.067 3.933 20 O -0.223 6.223 21 C -0.083 4.083 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.148 0.852 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.986 1.177 11.194 11.430 hybrid contribution -0.302 0.526 0.556 0.823 sum -2.289 1.703 11.750 12.092 Atomic orbital electron populations 1.21590 0.95804 0.99913 1.01241 1.21571 0.94974 0.97492 1.00509 1.17277 0.90904 0.89451 0.85414 1.59523 1.62683 1.06561 1.08159 1.22632 0.92838 1.41853 1.05869 0.94712 1.26681 1.09547 0.92932 0.92347 1.70970 1.08382 1.45743 1.33748 0.83050 0.71398 0.76706 0.75790 1.20839 1.20581 1.21440 1.19410 0.96135 0.96208 0.94316 1.20941 0.98579 0.96300 0.97931 1.17729 0.95664 0.89878 0.95152 1.91420 1.67769 1.56315 1.97464 1.21047 0.98083 0.97884 0.97138 1.21284 1.02432 0.99101 0.97614 1.19101 0.91131 0.89370 0.93716 1.86435 1.57207 1.46189 1.32519 1.23320 0.99681 1.01210 0.84043 0.92972 0.93294 0.93916 0.93653 0.93340 0.86728 0.85201 0.91083 0.84279 0.82051 0.81846 0.91206 0.87733 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.50 71.98 0.68 -4.40 16 2 C -0.11 -4.95 4.65 30.59 0.14 -4.81 16 3 C 0.26 12.27 0.35 2.03 0.00 12.27 16 4 N -0.84 -38.15 6.49 -157.50 -1.02 -39.17 16 5 C -0.59 -31.29 6.91 25.60 0.18 -31.12 16 6 H 0.03 1.92 7.05 -2.91 -0.02 1.90 16 7 C -0.02 -0.86 5.21 84.65 0.44 -0.42 16 8 N -0.94 -53.15 12.57 21.45 0.27 -52.88 16 9 Si 1.11 49.69 29.90 68.60 2.05 51.75 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 C -0.06 -2.51 3.69 -19.77 -0.07 -2.58 16 14 C -0.12 -4.63 9.17 22.30 0.20 -4.43 16 15 C 0.03 1.20 7.30 22.37 0.16 1.36 16 16 F -0.15 -5.04 17.27 44.97 0.78 -4.26 16 17 C -0.12 -3.55 10.02 22.30 0.22 -3.32 16 18 C -0.19 -5.51 9.04 22.36 0.20 -5.31 16 19 C 0.11 4.31 6.08 22.49 0.14 4.45 16 20 O -0.31 -11.98 7.05 -92.88 -0.66 -12.64 16 21 C 0.01 0.31 9.81 113.37 1.11 1.42 16 22 H 0.05 2.08 7.64 -2.39 -0.02 2.06 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.66 7.19 -2.39 -0.02 1.64 16 25 H 0.04 2.33 5.40 -2.39 -0.01 2.32 16 26 H 0.05 2.28 6.47 -2.39 -0.02 2.27 16 27 H 0.32 14.70 8.62 -89.69 -0.77 13.93 16 28 H 0.33 16.13 6.05 -89.70 -0.54 15.59 16 29 H 0.27 15.04 3.37 -92.71 -0.31 14.73 16 30 H 0.14 5.52 6.79 -2.91 -0.02 5.50 16 31 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.16 3.58 6.30 -2.91 -0.02 3.56 16 33 H 0.07 1.43 7.66 -2.39 -0.02 1.41 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.06 1.40 7.66 -2.39 -0.02 1.38 16 Total: -1.00 -60.52 280.87 5.11 -55.42 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: 0.27 Total: 38.67 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 3.41 Total: -36.89 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -0.75 Total: -92.05 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.66 Total: -12.64 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.78 Total: -4.26 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.75 kcal Total: -60.52 5.11 -55.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084420284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.089 kcal (2) G-P(sol) polarization free energy of solvation -60.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds