Wall clock time and date at job start Mon Mar 30 2020 07:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 N 1.46909 * 109.46938 * 174.82833 * 3 2 1 5 5 C 1.50699 * 109.47182 * 54.82727 * 3 2 1 6 6 H 1.07998 * 120.00058 * 240.00057 * 5 3 2 7 7 C 1.37879 * 119.99998 * 60.00099 * 5 3 2 8 8 N 1.31511 * 119.99813 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99927 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47282 * 59.99859 * 9 7 5 11 11 H 1.48498 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46956 * 299.99933 * 9 7 5 13 13 C 1.50699 * 109.47111 * 294.82472 * 3 2 1 14 14 C 1.38264 * 119.94169 * 263.96426 * 13 3 2 15 15 C 1.38180 * 120.09801 * 180.25317 * 14 13 3 16 16 C 1.38657 * 119.96499 * 359.49473 * 15 14 13 17 17 O 1.35956 * 120.05944 * 180.23002 * 16 15 14 18 18 C 1.42906 * 117.00086 * 0.02562 * 17 16 15 19 19 C 1.38904 * 119.87824 * 0.25073 * 16 15 14 20 20 F 1.35106 * 120.04563 * 180.02562 * 19 16 15 21 21 C 1.38253 * 119.93582 * 83.71209 * 13 3 2 22 22 H 1.09003 * 109.47276 * 186.47979 * 1 2 3 23 23 H 1.08995 * 109.47216 * 306.48772 * 1 2 3 24 24 H 1.09005 * 109.47011 * 66.48439 * 1 2 3 25 25 H 1.09004 * 109.47612 * 239.99881 * 2 1 3 26 26 H 1.08999 * 109.46993 * 120.00064 * 2 1 3 27 27 H 1.00905 * 110.99475 * 179.97438 * 4 3 2 28 28 H 1.00900 * 110.99734 * 303.95311 * 4 3 2 29 29 H 0.97003 * 120.00073 * 180.02562 * 8 7 5 30 30 H 1.08006 * 119.94971 * 0.02562 * 14 13 3 31 31 H 1.08002 * 120.01127 * 179.76875 * 15 14 13 32 32 H 1.09003 * 109.46677 * 299.99896 * 18 17 16 33 33 H 1.08994 * 109.47317 * 59.99514 * 18 17 16 34 34 H 1.09005 * 109.47253 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.98758 * 359.97438 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4443 0.1249 5 6 1.4358 2.1889 1.1614 6 1 0.8267 3.0628 0.9835 7 6 1.6606 1.7561 2.4510 8 7 2.4028 0.6923 2.6676 9 14 0.9111 2.6810 3.8906 10 1 -0.5685 2.6785 3.7642 11 1 1.3010 2.0188 5.1613 12 1 1.4056 4.0813 3.8907 13 6 1.6450 2.1149 -1.2895 14 6 2.5399 2.1685 -2.3421 15 6 2.1830 2.7889 -3.5242 16 6 0.9220 3.3494 -3.6588 17 8 0.5672 3.9561 -4.8226 18 6 1.5433 3.9793 -5.8661 19 6 0.0220 3.2902 -2.6024 20 9 -1.2078 3.8348 -2.7301 21 6 0.3866 2.6725 -1.4196 22 1 -0.3634 -1.0211 0.1160 23 1 -0.3633 0.6111 0.8262 24 1 -0.3633 0.4101 -0.9424 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8652 2.3864 0.1269 28 1 3.7969 0.9423 0.9496 29 1 2.5607 0.3875 3.5749 30 1 3.5206 1.7280 -2.2390 31 1 2.8845 2.8332 -4.3442 32 1 2.4324 4.5065 -5.5201 33 1 1.8093 2.9578 -6.1376 34 1 1.1327 4.4910 -6.7365 35 1 -0.3122 2.6255 -0.5975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084420288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:04 Heat of formation + Delta-G solvation = -62.784689 kcal Electronic energy + Delta-G solvation = -19240.581783 eV Core-core repulsion = 16153.232869 eV Total energy + Delta-G solvation = -3087.348914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.22099 -39.62765 -37.86478 -35.19502 -31.66982 -30.58693 -29.72038 -29.07591 -26.96913 -25.68876 -23.34240 -22.06371 -21.55467 -19.16622 -17.84425 -16.80043 -15.94692 -15.81635 -15.69023 -15.07180 -14.65092 -14.31408 -14.08714 -13.79848 -13.32429 -13.19329 -12.70225 -12.31943 -12.08913 -11.86491 -11.73890 -11.29803 -10.99426 -10.81560 -10.80926 -10.62162 -10.41802 -10.15594 -9.92818 -9.49965 -9.33433 -8.64945 -8.25988 -7.50157 -7.21470 -6.10831 -4.26325 1.77156 1.90871 3.21958 3.27582 3.31336 3.45485 4.22264 4.32605 4.75962 5.08244 5.10510 5.21194 5.31615 5.48990 5.56154 5.82447 6.09376 6.12098 6.17704 6.42883 6.49271 6.57391 6.75848 6.79797 6.93376 7.12912 7.19306 7.27314 7.47725 7.55463 7.66384 7.73309 7.88678 8.13278 8.65615 8.87661 9.07163 9.44577 10.84583 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.006890 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.191573 B = 4062.800664 C = 4406.682194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C 0.271 3.729 4 N -0.849 5.849 5 C -0.538 4.538 6 H 0.058 0.942 7 C 0.072 3.928 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C -0.038 4.038 14 C -0.084 4.084 15 C -0.192 4.192 16 C 0.065 3.935 17 O -0.319 6.319 18 C 0.031 3.969 19 C 0.054 3.946 20 F -0.144 7.144 21 C -0.103 4.103 22 H 0.026 0.974 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.023 0.977 26 H 0.091 0.909 27 H 0.315 0.685 28 H 0.357 0.643 29 H 0.265 0.735 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 2.429 -10.123 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 C 0.179 3.821 4 N -0.378 5.378 5 C -0.578 4.578 6 H 0.076 0.924 7 C -0.130 4.130 8 N -0.527 5.527 9 Si 0.718 3.282 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.039 4.039 14 C -0.102 4.102 15 C -0.210 4.210 16 C 0.020 3.980 17 O -0.233 6.233 18 C -0.065 4.065 19 C 0.034 3.966 20 F -0.123 7.123 21 C -0.122 4.122 22 H 0.045 0.955 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.109 0.891 27 H 0.124 0.876 28 H 0.174 0.826 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.153 1.999 -10.711 10.898 hybrid contribution -0.593 1.110 1.607 2.041 sum -0.440 3.110 -9.104 9.631 Atomic orbital electron populations 1.21744 0.97678 0.99062 1.01025 1.21332 0.94182 0.97111 1.00740 1.17282 0.86362 0.91662 0.86748 1.59381 1.11222 1.19143 1.48051 1.21809 1.32450 1.12459 0.91069 0.92401 1.24915 0.94812 0.94589 0.98706 1.69663 1.38350 1.23332 1.21372 0.86671 0.79874 0.79999 0.81609 1.20148 1.21261 1.20337 1.20272 0.91608 0.95132 0.96924 1.21107 1.00771 0.97223 0.91110 1.21065 0.94998 1.04682 1.00294 1.18883 0.94140 0.98783 0.86146 1.86065 1.41561 1.74238 1.21467 1.22971 0.92506 1.01694 0.89295 1.17076 0.80847 1.04212 0.94458 1.91427 1.40220 1.84253 1.96420 1.21152 0.98762 0.97308 0.95014 0.95471 0.91461 0.94753 0.95866 0.89063 0.87626 0.82611 0.92492 0.84284 0.85643 0.92853 0.92869 0.88742 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.74 37.16 0.32 -2.56 16 2 C -0.10 -2.14 4.95 -26.73 -0.13 -2.27 16 3 C 0.27 6.07 0.59 -133.90 -0.08 5.99 16 4 N -0.85 -18.42 7.55 -1.13 -0.01 -18.43 16 5 C -0.54 -13.19 5.89 -34.44 -0.20 -13.40 16 6 H 0.06 1.45 6.42 -52.49 -0.34 1.12 16 7 C 0.07 1.80 5.21 -17.82 -0.09 1.70 16 8 N -0.89 -22.36 9.63 55.43 0.53 -21.83 16 9 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C -0.04 -0.79 4.52 -104.61 -0.47 -1.26 16 14 C -0.08 -1.54 9.30 -39.59 -0.37 -1.91 16 15 C -0.19 -3.15 9.04 -39.45 -0.36 -3.50 16 16 C 0.07 1.17 6.69 -39.18 -0.26 0.91 16 17 O -0.32 -5.20 10.36 -19.60 -0.20 -5.41 16 18 C 0.03 0.33 9.81 101.05 0.99 1.33 16 19 C 0.05 1.06 7.31 -39.30 -0.29 0.77 16 20 F -0.14 -2.87 17.11 2.25 0.04 -2.83 16 21 C -0.10 -2.11 6.93 -39.54 -0.27 -2.39 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 1.51 6.81 -51.93 -0.35 1.16 16 24 H 0.03 0.68 6.36 -51.93 -0.33 0.35 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 2.25 6.23 -51.93 -0.32 1.93 16 27 H 0.31 6.67 8.95 -39.29 -0.35 6.32 16 28 H 0.36 8.35 6.99 -39.29 -0.27 8.08 16 29 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.14 2.46 7.23 -52.48 -0.38 2.09 16 31 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 32 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 33 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.15 3.06 6.34 -52.48 -0.33 2.73 16 LS Contribution 284.20 15.07 4.28 4.28 Total: -1.00 -25.76 284.20 -5.80 -31.56 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -4.21 Total: 14.19 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.21 Total: -16.58 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.53 Total: -40.25 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.20 Total: -5.41 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -25.76 -5.80 -31.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084420288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.221 kcal (2) G-P(sol) polarization free energy of solvation -25.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds