Wall clock time and date at job start Mon Mar 30 2020 07:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 N 1.46909 * 109.46938 * 174.82833 * 3 2 1 5 5 C 1.50699 * 109.47182 * 54.82727 * 3 2 1 6 6 H 1.07998 * 120.00058 * 240.00057 * 5 3 2 7 7 C 1.37879 * 119.99998 * 60.00099 * 5 3 2 8 8 N 1.31511 * 119.99813 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99927 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47282 * 59.99859 * 9 7 5 11 11 H 1.48498 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46956 * 299.99933 * 9 7 5 13 13 C 1.50699 * 109.47111 * 294.82472 * 3 2 1 14 14 C 1.38264 * 119.94169 * 263.96426 * 13 3 2 15 15 C 1.38180 * 120.09801 * 180.25317 * 14 13 3 16 16 C 1.38657 * 119.96499 * 359.49473 * 15 14 13 17 17 O 1.35956 * 120.05944 * 180.23002 * 16 15 14 18 18 C 1.42906 * 117.00086 * 0.02562 * 17 16 15 19 19 C 1.38904 * 119.87824 * 0.25073 * 16 15 14 20 20 F 1.35106 * 120.04563 * 180.02562 * 19 16 15 21 21 C 1.38253 * 119.93582 * 83.71209 * 13 3 2 22 22 H 1.09003 * 109.47276 * 186.47979 * 1 2 3 23 23 H 1.08995 * 109.47216 * 306.48772 * 1 2 3 24 24 H 1.09005 * 109.47011 * 66.48439 * 1 2 3 25 25 H 1.09004 * 109.47612 * 239.99881 * 2 1 3 26 26 H 1.08999 * 109.46993 * 120.00064 * 2 1 3 27 27 H 1.00905 * 110.99475 * 179.97438 * 4 3 2 28 28 H 1.00900 * 110.99734 * 303.95311 * 4 3 2 29 29 H 0.97003 * 120.00073 * 180.02562 * 8 7 5 30 30 H 1.08006 * 119.94971 * 0.02562 * 14 13 3 31 31 H 1.08002 * 120.01127 * 179.76875 * 15 14 13 32 32 H 1.09003 * 109.46677 * 299.99896 * 18 17 16 33 33 H 1.08994 * 109.47317 * 59.99514 * 18 17 16 34 34 H 1.09005 * 109.47253 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.98758 * 359.97438 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4443 0.1249 5 6 1.4358 2.1889 1.1614 6 1 0.8267 3.0628 0.9835 7 6 1.6606 1.7561 2.4510 8 7 2.4028 0.6923 2.6676 9 14 0.9111 2.6810 3.8906 10 1 -0.5685 2.6785 3.7642 11 1 1.3010 2.0188 5.1613 12 1 1.4056 4.0813 3.8907 13 6 1.6450 2.1149 -1.2895 14 6 2.5399 2.1685 -2.3421 15 6 2.1830 2.7889 -3.5242 16 6 0.9220 3.3494 -3.6588 17 8 0.5672 3.9561 -4.8226 18 6 1.5433 3.9793 -5.8661 19 6 0.0220 3.2902 -2.6024 20 9 -1.2078 3.8348 -2.7301 21 6 0.3866 2.6725 -1.4196 22 1 -0.3634 -1.0211 0.1160 23 1 -0.3633 0.6111 0.8262 24 1 -0.3633 0.4101 -0.9424 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8652 2.3864 0.1269 28 1 3.7969 0.9423 0.9496 29 1 2.5607 0.3875 3.5749 30 1 3.5206 1.7280 -2.2390 31 1 2.8845 2.8332 -4.3442 32 1 2.4324 4.5065 -5.5201 33 1 1.8093 2.9578 -6.1376 34 1 1.1327 4.4910 -6.7365 35 1 -0.3122 2.6255 -0.5975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084420288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:04 Heat of formation + Delta-G solvation = -77.926205 kcal Electronic energy + Delta-G solvation = -19241.238368 eV Core-core repulsion = 16153.232869 eV Total energy + Delta-G solvation = -3088.005500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -49.73747 -40.99190 -39.32116 -36.79340 -33.51680 -32.19848 -31.28419 -30.46457 -28.06795 -27.51819 -25.01268 -23.54788 -23.06606 -20.85284 -19.15501 -18.42005 -17.47314 -17.35171 -17.02917 -16.82302 -15.96917 -15.87119 -15.60882 -15.19905 -15.06992 -14.80661 -14.22639 -14.00430 -13.67739 -13.16094 -12.97485 -12.94980 -12.78881 -12.48085 -12.32264 -12.14906 -11.96031 -11.76548 -11.68507 -11.29585 -11.03943 -10.54732 -9.72303 -9.08093 -8.88402 -7.99229 -6.19619 0.30886 0.46236 1.39719 1.43779 1.48330 2.30866 2.42068 2.78591 3.17854 3.35393 3.89578 4.03195 4.33497 4.42572 4.44930 4.50280 4.59111 4.69378 4.72550 4.77490 4.84422 5.07682 5.09856 5.23237 5.33509 5.42819 5.60068 5.71203 5.76155 5.83419 5.91386 6.03996 6.27912 6.44289 6.78765 7.06755 7.23596 7.53735 8.92112 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.006890 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.191573 B = 4062.800664 C = 4406.682194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C 0.269 3.731 4 N -0.837 5.837 5 C -0.543 4.543 6 H 0.045 0.955 7 C 0.040 3.960 8 N -0.900 5.900 9 Si 0.935 3.065 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.281 1.281 13 C -0.060 4.060 14 C -0.080 4.080 15 C -0.176 4.176 16 C 0.075 3.925 17 O -0.336 6.336 18 C 0.017 3.983 19 C 0.033 3.967 20 F -0.151 7.151 21 C -0.111 4.111 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.317 0.683 28 H 0.348 0.652 29 H 0.263 0.737 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 2.838 -12.023 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.130 4.130 3 C 0.177 3.823 4 N -0.365 5.365 5 C -0.583 4.583 6 H 0.063 0.937 7 C -0.161 4.161 8 N -0.539 5.539 9 Si 0.762 3.238 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.206 1.206 13 C -0.061 4.061 14 C -0.099 4.099 15 C -0.195 4.195 16 C 0.029 3.971 17 O -0.251 6.251 18 C -0.077 4.077 19 C 0.013 3.987 20 F -0.130 7.130 21 C -0.131 4.131 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.163 0.837 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.850 2.418 -12.629 12.886 hybrid contribution -0.803 1.029 2.063 2.441 sum 0.047 3.447 -10.566 11.114 Atomic orbital electron populations 1.21629 0.96829 0.99608 1.00541 1.21254 0.94933 0.97137 0.99688 1.17235 0.86351 0.91477 0.87219 1.59381 1.10858 1.19089 1.47206 1.21972 1.32099 1.12136 0.92095 0.93726 1.25363 0.95339 0.95234 1.00184 1.69749 1.38918 1.23878 1.21381 0.85986 0.78951 0.78955 0.79869 1.20567 1.21100 1.20633 1.20119 0.92345 0.96640 0.96999 1.21207 1.00499 0.97033 0.91132 1.21372 0.94912 1.02665 1.00502 1.18953 0.93931 0.97873 0.86361 1.86065 1.43726 1.73647 1.21627 1.23402 0.92367 1.03359 0.88538 1.17222 0.81224 1.05087 0.95169 1.91399 1.40712 1.84423 1.96474 1.20968 0.98642 0.98307 0.95143 0.93954 0.93481 0.94025 0.95344 0.91421 0.87386 0.83723 0.92718 0.83504 0.81631 0.91415 0.91324 0.86116 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.74 71.98 0.63 -4.77 16 2 C -0.09 -4.12 4.95 30.59 0.15 -3.97 16 3 C 0.27 12.04 0.59 2.03 0.00 12.04 16 4 N -0.84 -36.01 7.55 -157.50 -1.19 -37.20 16 5 C -0.54 -26.96 5.89 25.60 0.15 -26.81 16 6 H 0.04 2.29 6.42 -2.91 -0.02 2.28 16 7 C 0.04 1.99 5.21 84.66 0.44 2.43 16 8 N -0.90 -45.64 9.63 21.45 0.21 -45.43 16 9 Si 0.93 41.52 29.54 68.60 2.03 43.54 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 C -0.06 -2.44 4.52 -19.86 -0.09 -2.53 16 14 C -0.08 -2.78 9.30 22.26 0.21 -2.57 16 15 C -0.18 -5.19 9.04 22.36 0.20 -4.98 16 16 C 0.07 2.49 6.69 22.53 0.15 2.64 16 17 O -0.34 -9.97 10.36 -93.06 -0.96 -10.93 16 18 C 0.02 0.30 9.81 113.37 1.11 1.42 16 19 C 0.03 1.26 7.31 22.45 0.16 1.43 16 20 F -0.15 -5.99 17.11 44.97 0.77 -5.23 16 21 C -0.11 -4.57 6.93 22.30 0.15 -4.42 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.05 2.14 6.81 -2.39 -0.02 2.13 16 24 H 0.04 1.66 6.36 -2.38 -0.02 1.64 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 3.36 6.23 -2.39 -0.01 3.35 16 27 H 0.32 13.26 8.95 -89.69 -0.80 12.45 16 28 H 0.35 16.26 6.99 -89.69 -0.63 15.63 16 29 H 0.26 13.05 8.31 -92.71 -0.77 12.28 16 30 H 0.15 4.83 7.23 -2.91 -0.02 4.81 16 31 H 0.17 3.50 6.30 -2.91 -0.02 3.48 16 32 H 0.07 1.02 7.66 -2.39 -0.02 1.01 16 33 H 0.07 1.02 7.66 -2.39 -0.02 1.01 16 34 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.13 5.59 6.34 -2.91 -0.02 5.57 16 Total: -1.00 -54.71 284.20 3.83 -50.89 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.30 Total: 34.44 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.27 Total: -30.09 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -0.98 Total: -82.63 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.96 Total: -10.93 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.77 Total: -5.23 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -54.71 3.83 -50.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084420288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.040 kcal (2) G-P(sol) polarization free energy of solvation -54.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds