Wall clock time and date at job start Mon Mar 30 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00215 * 2 1 4 4 H 1.48498 * 109.47296 * 240.00049 * 3 2 1 5 5 H 1.48496 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47164 * 119.99771 * 3 2 1 7 7 C 1.37884 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99803 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99810 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46831 * 179.97438 * 9 7 2 11 11 C 1.39320 * 119.99989 * 180.02562 * 10 9 7 12 12 C 1.38249 * 120.71444 * 359.97438 * 11 10 9 13 13 C 1.39444 * 122.06448 * 180.02562 * 12 11 10 14 14 C 1.36275 * 120.48576 * 359.94993 * 13 12 11 15 15 C 1.39117 * 118.21971 * 0.02562 * 14 13 12 16 16 C 1.39170 * 114.55690 * 180.02562 * 15 14 13 17 17 C 1.36137 * 118.00211 * 180.02562 * 16 15 14 18 18 C 1.39669 * 120.34462 * 359.93652 * 17 16 15 19 19 C 1.36546 * 122.27337 * 0.03988 * 18 17 16 20 20 C 1.40282 * 118.84420 * 359.97438 * 19 18 17 21 21 C 1.50924 * 107.42088 * 359.97438 * 16 15 14 22 22 C 1.50977 * 134.37582 * 180.02562 * 14 13 12 23 23 H 0.96999 * 119.99870 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47418 * 60.00003 * 9 7 2 25 25 H 1.08993 * 109.47403 * 299.99782 * 9 7 2 26 26 H 0.97001 * 120.00078 * 0.02562 * 10 9 7 27 27 H 1.07998 * 118.97357 * 0.03290 * 12 11 10 28 28 H 1.07998 * 119.75768 * 179.97438 * 13 12 11 29 29 H 1.08002 * 119.83181 * 180.02562 * 17 16 15 30 30 H 1.08001 * 118.86422 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.57649 * 180.02562 * 19 18 17 32 32 H 1.09000 * 110.27513 * 241.02568 * 21 16 15 33 33 H 1.08993 * 110.27692 * 118.93902 * 21 16 15 34 34 H 1.09001 * 110.27443 * 60.98020 * 22 14 13 35 35 H 1.08993 * 110.27914 * 298.89483 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7386 -4.9262 0.0000 12 6 0.3826 -5.1957 0.0000 13 6 -0.1130 -6.4991 0.0000 14 6 0.7389 -7.5628 -0.0010 15 6 2.1069 -7.3099 -0.0015 16 6 2.9057 -8.4495 -0.0031 17 6 4.2569 -8.2829 -0.0032 18 6 4.8097 -7.0003 -0.0029 19 6 4.0381 -5.8737 -0.0019 20 6 2.6418 -6.0098 -0.0016 21 6 1.9859 -9.6460 -0.0032 22 6 0.5567 -9.0615 -0.0018 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 3.1567 -3.4354 0.0009 27 1 -0.3147 -4.3711 -0.0001 28 1 -1.1799 -6.6669 0.0004 29 1 4.9047 -9.1470 -0.0048 30 1 5.8846 -6.8958 -0.0034 31 1 4.4947 -4.8950 -0.0022 32 1 2.1493 -10.2480 0.8906 33 1 2.1472 -10.2463 -0.8986 34 1 0.0183 -9.3761 -0.8959 35 1 0.0211 -9.3774 0.8933 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084916215.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:07 Heat of formation + Delta-G solvation = 35.895269 kcal Electronic energy + Delta-G solvation = -17484.298819 eV Core-core repulsion = 14831.998213 eV Total energy + Delta-G solvation = -2652.300605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80735 -36.96250 -35.84664 -33.91318 -32.32410 -30.08401 -29.07615 -28.21327 -26.28255 -23.99444 -23.18355 -22.01880 -21.02611 -19.71351 -17.50916 -16.84207 -16.09078 -15.58672 -15.15380 -14.80438 -14.55169 -13.93639 -13.50212 -13.40144 -13.07610 -12.70808 -12.49630 -12.34618 -11.97052 -11.85875 -11.46591 -11.10138 -11.06704 -11.02740 -10.71102 -10.52036 -10.39115 -10.15798 -9.69919 -9.46531 -8.71680 -8.20841 -8.16771 -6.27987 -6.25411 -4.31434 1.07885 1.48141 2.55719 3.21433 3.26298 3.27928 3.45186 4.17706 4.41880 4.52796 4.57374 4.87688 5.11842 5.19613 5.23449 5.35306 5.35610 5.49052 5.61437 5.72821 5.83912 5.87684 6.02920 6.13043 6.18915 6.36197 6.44630 6.68915 6.70578 6.80406 6.96047 7.01128 7.12733 7.25165 7.35391 7.44568 7.60861 7.88018 8.16603 8.55481 8.80801 9.35025 10.85045 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.035142 B = 0.004916 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.571065 B = 5693.802256 C = 6464.514776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.714 5.714 11 C 0.249 3.751 12 C -0.235 4.235 13 C -0.028 4.028 14 C -0.186 4.186 15 C -0.028 4.028 16 C -0.102 4.102 17 C -0.099 4.099 18 C -0.145 4.145 19 C -0.084 4.084 20 C -0.104 4.104 21 C -0.071 4.071 22 C -0.060 4.060 23 H 0.267 0.733 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.392 0.608 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 -15.956 -0.007 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.128 3.872 10 N -0.334 5.334 11 C 0.137 3.863 12 C -0.260 4.260 13 C -0.047 4.047 14 C -0.189 4.189 15 C -0.029 4.029 16 C -0.103 4.103 17 C -0.117 4.117 18 C -0.164 4.164 19 C -0.102 4.102 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.097 4.097 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.226 0.774 27 H 0.143 0.857 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.841 -15.564 -0.006 16.031 hybrid contribution 0.818 1.225 0.000 1.473 sum 4.659 -14.340 -0.006 15.077 Atomic orbital electron populations 1.69930 1.06089 1.27564 1.48920 1.24918 0.94942 0.99451 0.94514 0.86456 0.79454 0.82166 0.78780 1.20024 1.20974 1.20028 1.21136 0.93306 0.90367 1.53296 0.92025 1.19196 0.88606 0.82380 0.96999 1.45501 1.09889 1.02507 1.75506 1.18018 0.92588 0.84757 0.90979 1.20465 0.93565 0.96817 1.15159 1.19910 0.98424 0.90748 0.95639 1.19417 0.92923 0.94785 1.11799 1.17961 0.94743 0.92401 0.97777 1.19898 0.93491 0.95208 1.01658 1.20136 0.93421 0.96784 1.01343 1.20609 0.99355 0.91970 1.04466 1.20852 0.92491 0.98494 0.98394 1.17435 0.93007 0.92286 1.07983 1.20840 0.92758 0.95138 1.02046 1.20649 0.96108 0.91210 1.01721 0.92317 0.95750 0.95742 0.77410 0.85701 0.86864 0.86762 0.86674 0.86170 0.90484 0.90492 0.91035 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.29 4.67 -5.20 -0.02 6.26 16 10 N -0.71 -15.31 5.68 -59.49 -0.34 -15.65 16 11 C 0.25 5.01 6.70 -83.38 -0.56 4.46 16 12 C -0.23 -4.60 9.29 -39.13 -0.36 -4.96 16 13 C -0.03 -0.48 9.98 -39.84 -0.40 -0.87 16 14 C -0.19 -3.01 6.37 -104.87 -0.67 -3.67 16 15 C -0.03 -0.49 5.62 -108.34 -0.61 -1.10 16 16 C -0.10 -1.49 6.38 -104.92 -0.67 -2.16 16 17 C -0.10 -1.33 10.00 -39.80 -0.40 -1.73 16 18 C -0.15 -2.04 9.90 -39.66 -0.39 -2.43 16 19 C -0.08 -1.35 9.64 -39.42 -0.38 -1.73 16 20 C -0.10 -1.92 5.74 -107.17 -0.62 -2.53 16 21 C -0.07 -0.81 6.90 -27.03 -0.19 -1.00 16 22 C -0.06 -0.73 6.90 -27.00 -0.19 -0.92 16 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.02 0.66 7.96 -51.93 -0.41 0.25 16 25 H 0.02 0.67 7.96 -51.93 -0.41 0.25 16 26 H 0.39 7.78 6.81 -40.82 -0.28 7.50 16 27 H 0.13 2.56 6.69 -52.49 -0.35 2.21 16 28 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.78 6.83 -52.49 -0.36 1.43 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -29.09 291.54 -10.40 -39.49 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.31 Total: 6.23 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -5.87 Total: -25.58 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.40 Total: -40.21 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.09 -10.40 -39.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084916215.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.387 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds