Wall clock time and date at job start Mon Mar 30 2020 07:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47049 * 2 1 4 4 C 1.38424 * 122.54091 * 265.02099 * 3 2 1 5 5 C 1.33385 * 114.92103 * 179.97438 * 4 3 2 6 6 S 1.75884 * 109.59663 * 359.97438 * 5 4 3 7 7 C 1.33394 * 122.53868 * 85.00107 * 3 2 1 8 8 C 1.50703 * 125.20154 * 359.75062 * 7 3 2 9 9 N 1.46894 * 109.46765 * 90.00763 * 8 7 3 10 10 C 1.46900 * 110.99967 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47357 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47115 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46957 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00184 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00272 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99490 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00449 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46668 * 120.00453 * 17 15 13 20 20 H 1.48495 * 109.47315 * 240.00329 * 17 15 13 21 21 H 1.09000 * 109.47173 * 300.00168 * 1 2 3 22 22 H 1.09007 * 109.47072 * 60.00035 * 1 2 3 23 23 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47401 * 239.99862 * 2 1 3 25 25 H 1.09007 * 109.47072 * 119.99965 * 2 1 3 26 26 H 1.07998 * 122.53413 * 359.95690 * 4 3 2 27 27 H 1.08000 * 125.20169 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46633 * 210.00164 * 8 7 3 29 29 H 1.08993 * 109.47308 * 330.00523 * 8 7 3 30 30 H 1.00903 * 111.00107 * 303.94818 * 9 8 7 31 31 H 1.08995 * 109.47225 * 299.99674 * 10 9 8 32 32 H 1.09001 * 109.47107 * 59.99449 * 10 9 8 33 33 H 1.09010 * 109.46997 * 299.99651 * 11 10 9 34 34 H 1.09001 * 109.47448 * 59.99674 * 11 10 9 35 35 H 1.08997 * 109.46940 * 299.99498 * 12 11 10 36 36 H 1.08996 * 109.47247 * 60.00074 * 12 11 10 37 37 H 0.97007 * 119.99837 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3760 2.0891 -1.1625 5 6 2.8017 3.3409 -0.9864 6 16 2.7813 3.7352 0.7276 7 6 2.1791 2.1300 1.1203 8 6 1.8692 1.6340 2.5092 9 7 3.0674 1.0085 3.0844 10 6 2.8024 0.5127 4.4416 11 6 4.0704 -0.1311 5.0060 12 6 3.7946 -0.6470 6.4198 13 6 5.0434 -1.2817 6.9754 14 1 5.9438 -1.3135 6.3800 15 6 5.0367 -1.8208 8.2444 16 7 3.9403 -1.7816 8.9697 17 14 6.5844 -2.6081 8.9330 18 1 7.6724 -2.5248 7.9257 19 1 6.9969 -1.8922 10.1669 20 1 6.3145 -4.0326 9.2539 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.3050 1.6314 -2.1382 27 1 3.1115 4.0100 -1.7755 28 1 1.5615 2.4725 3.1341 29 1 1.0638 0.9012 2.4621 30 1 3.4103 0.2691 2.4895 31 1 2.5014 1.3435 5.0796 32 1 2.0032 -0.2279 4.4082 33 1 4.3710 -0.9622 4.3678 34 1 4.8699 0.6091 5.0392 35 1 3.4943 0.1842 7.0577 36 1 2.9951 -1.3871 6.3869 37 1 3.9355 -2.1612 9.8624 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087310467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:34 Heat of formation + Delta-G solvation = 3.773397 kcal Electronic energy + Delta-G solvation = -15794.077414 eV Core-core repulsion = 13275.827852 eV Total energy + Delta-G solvation = -2518.249563 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.94031 -36.26875 -33.63536 -32.85890 -31.56268 -29.35805 -26.61937 -25.21603 -23.28675 -22.16934 -22.07996 -20.16216 -18.37093 -17.38974 -16.25436 -15.62909 -15.38400 -14.75485 -14.36543 -14.21818 -13.83213 -13.72255 -13.20857 -12.96978 -12.46551 -12.29436 -11.99362 -11.75723 -11.62910 -11.51008 -11.33065 -11.07362 -10.85315 -10.61485 -10.55925 -10.46468 -9.68413 -9.36636 -9.04555 -8.70286 -8.39676 -8.32810 -8.16628 -5.97832 -3.99693 0.92699 1.61277 1.99435 2.59438 3.32868 3.40181 3.44980 4.42941 4.52519 4.71248 4.81184 4.96965 5.15022 5.18407 5.22831 5.38145 5.46977 5.56844 5.62130 5.69785 5.75462 5.80309 5.90144 6.02020 6.05388 6.31658 6.34124 6.46474 6.72351 6.75484 7.14909 7.29398 7.59319 7.70875 7.85420 8.02772 8.46174 9.07747 9.64316 11.13676 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.034254 B = 0.003475 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.228684 B = 8055.513150 C = 8374.276057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.107 4.107 4 C -0.128 4.128 5 C -0.224 4.224 6 S 0.114 5.886 7 C -0.162 4.162 8 C 0.125 3.875 9 N -0.685 5.685 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.135 0.865 27 H 0.160 0.840 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.340 0.660 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 8.089 -20.530 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.120 4.120 4 C -0.159 4.159 5 C -0.359 4.359 6 S 0.380 5.620 7 C -0.280 4.280 8 C -0.005 4.005 9 N -0.316 5.316 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.153 0.847 27 H 0.178 0.822 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.123 9.973 -19.284 22.557 hybrid contribution -0.037 -2.377 -0.622 2.458 sum -6.160 7.595 -19.906 22.178 Atomic orbital electron populations 1.21743 0.94859 1.01684 1.02078 1.20246 0.95951 0.91519 1.02756 1.18829 1.03538 0.97807 0.91798 1.19976 1.02503 0.94308 0.99070 1.25567 1.09949 1.00900 0.99524 1.84333 1.64211 1.13351 1.00094 1.24275 1.07606 0.97443 0.98670 1.20375 0.92448 0.98846 0.88855 1.60613 1.30127 1.36607 1.04285 1.22161 0.98782 0.98071 0.87926 1.21625 0.95146 0.98643 0.99042 1.19073 0.96960 0.95967 0.89599 1.21298 0.97414 1.37090 0.99793 0.92610 1.25034 0.96147 0.96277 0.97112 1.69982 1.26983 1.46139 1.10535 0.86539 0.83517 0.78988 0.78990 1.19715 1.21021 1.21057 0.92559 0.92666 0.92361 0.91012 0.91179 0.84700 0.82199 0.90232 0.93326 0.84254 0.91353 0.95605 0.93628 0.92502 0.96549 0.96785 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.84 37.16 0.37 -0.90 16 2 C -0.06 -0.62 5.56 -27.88 -0.16 -0.78 16 3 C -0.11 -1.17 5.06 -106.25 -0.54 -1.71 16 4 C -0.13 -1.28 9.96 -41.21 -0.41 -1.69 16 5 C -0.22 -2.20 11.23 29.04 0.33 -1.87 16 6 S 0.11 1.29 23.33 -107.50 -2.51 -1.21 16 7 C -0.16 -1.96 6.02 -36.00 -0.22 -2.18 16 8 C 0.13 1.61 5.58 -4.98 -0.03 1.58 16 9 N -0.68 -10.29 6.49 -115.06 -0.75 -11.04 16 10 C 0.06 1.02 5.69 -3.82 -0.02 1.00 16 11 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H 0.06 0.52 7.27 -51.93 -0.38 0.15 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 25 H 0.07 0.72 7.29 -51.93 -0.38 0.35 16 26 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.59 6.51 -51.93 -0.34 0.25 16 30 H 0.34 4.91 8.49 -39.29 -0.33 4.58 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -30.40 320.97 -10.11 -40.51 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.04 Total: -1.24 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -1.37 Total: -22.23 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.01 Total: -37.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.40 -10.11 -40.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087310467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.284 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds