Wall clock time and date at job start Mon Mar 30 2020 07:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47049 * 2 1 4 4 C 1.38424 * 122.54091 * 265.02099 * 3 2 1 5 5 C 1.33385 * 114.92103 * 179.97438 * 4 3 2 6 6 S 1.75884 * 109.59663 * 359.97438 * 5 4 3 7 7 C 1.33394 * 122.53868 * 85.00107 * 3 2 1 8 8 C 1.50703 * 125.20154 * 359.75062 * 7 3 2 9 9 N 1.46894 * 109.46765 * 90.00763 * 8 7 3 10 10 C 1.46900 * 110.99967 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47357 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47115 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46957 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00184 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00272 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99490 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00449 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46668 * 120.00453 * 17 15 13 20 20 H 1.48495 * 109.47315 * 240.00329 * 17 15 13 21 21 H 1.09000 * 109.47173 * 300.00168 * 1 2 3 22 22 H 1.09007 * 109.47072 * 60.00035 * 1 2 3 23 23 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47401 * 239.99862 * 2 1 3 25 25 H 1.09007 * 109.47072 * 119.99965 * 2 1 3 26 26 H 1.07998 * 122.53413 * 359.95690 * 4 3 2 27 27 H 1.08000 * 125.20169 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46633 * 210.00164 * 8 7 3 29 29 H 1.08993 * 109.47308 * 330.00523 * 8 7 3 30 30 H 1.00903 * 111.00107 * 303.94818 * 9 8 7 31 31 H 1.08995 * 109.47225 * 299.99674 * 10 9 8 32 32 H 1.09001 * 109.47107 * 59.99449 * 10 9 8 33 33 H 1.09010 * 109.46997 * 299.99651 * 11 10 9 34 34 H 1.09001 * 109.47448 * 59.99674 * 11 10 9 35 35 H 1.08997 * 109.46940 * 299.99498 * 12 11 10 36 36 H 1.08996 * 109.47247 * 60.00074 * 12 11 10 37 37 H 0.97007 * 119.99837 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3760 2.0891 -1.1625 5 6 2.8017 3.3409 -0.9864 6 16 2.7813 3.7352 0.7276 7 6 2.1791 2.1300 1.1203 8 6 1.8692 1.6340 2.5092 9 7 3.0674 1.0085 3.0844 10 6 2.8024 0.5127 4.4416 11 6 4.0704 -0.1311 5.0060 12 6 3.7946 -0.6470 6.4198 13 6 5.0434 -1.2817 6.9754 14 1 5.9438 -1.3135 6.3800 15 6 5.0367 -1.8208 8.2444 16 7 3.9403 -1.7816 8.9697 17 14 6.5844 -2.6081 8.9330 18 1 7.6724 -2.5248 7.9257 19 1 6.9969 -1.8922 10.1669 20 1 6.3145 -4.0326 9.2539 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.3050 1.6314 -2.1382 27 1 3.1115 4.0100 -1.7755 28 1 1.5615 2.4725 3.1341 29 1 1.0638 0.9012 2.4621 30 1 3.4103 0.2691 2.4895 31 1 2.5014 1.3435 5.0796 32 1 2.0032 -0.2279 4.4082 33 1 4.3710 -0.9622 4.3678 34 1 4.8699 0.6091 5.0392 35 1 3.4943 0.1842 7.0577 36 1 2.9951 -1.3871 6.3869 37 1 3.9355 -2.1612 9.8624 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087310467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:31 Heat of formation + Delta-G solvation = -13.640620 kcal Electronic energy + Delta-G solvation = -15794.832543 eV Core-core repulsion = 13275.827852 eV Total energy + Delta-G solvation = -2519.004691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.79342 -37.61123 -35.51001 -33.78126 -33.19926 -30.63012 -28.10938 -26.45998 -24.57659 -23.53332 -22.91410 -21.94514 -19.19377 -18.56736 -18.21669 -16.74484 -16.56947 -16.33350 -15.76827 -15.37932 -15.00722 -14.60523 -14.39256 -14.20162 -13.76021 -13.61187 -13.40760 -13.05226 -12.81048 -12.70217 -12.62875 -12.45506 -12.26251 -12.21102 -11.81430 -11.56988 -11.41843 -11.39062 -11.11683 -10.55759 -9.62530 -9.36921 -9.21051 -8.20275 -6.31144 0.09362 0.78074 1.17895 1.40203 1.40621 1.54287 1.79528 2.41280 3.12927 3.29078 3.85930 3.98633 4.14441 4.20061 4.29372 4.41267 4.44349 4.50410 4.58096 4.70921 4.76852 4.85817 4.96155 4.98670 5.06745 5.08600 5.22583 5.24151 5.35609 5.51775 5.56117 5.65778 5.74723 5.85790 5.97415 6.26710 6.39743 6.85811 7.38130 8.91853 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.034254 B = 0.003475 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.228684 B = 8055.513150 C = 8374.276057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.101 4.101 4 C -0.138 4.138 5 C -0.212 4.212 6 S 0.087 5.913 7 C -0.187 4.187 8 C 0.130 3.870 9 N -0.686 5.686 10 C 0.073 3.927 11 C -0.092 4.092 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.058 0.942 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.277 1.277 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.159 0.841 27 H 0.186 0.814 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.344 0.656 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.050 0.950 35 H -0.008 1.008 36 H -0.007 1.007 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 7.800 -22.254 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.115 4.115 4 C -0.168 4.168 5 C -0.348 4.348 6 S 0.353 5.647 7 C -0.304 4.304 8 C 0.000 4.000 9 N -0.318 5.318 10 C -0.056 4.056 11 C -0.130 4.130 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.202 1.202 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.177 0.823 27 H 0.203 0.797 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.453 9.692 -21.027 23.786 hybrid contribution -0.283 -2.265 -0.151 2.287 sum -5.736 7.427 -21.178 23.164 Atomic orbital electron populations 1.21716 0.94161 1.02261 1.01920 1.20303 0.96516 0.90757 1.03010 1.19113 1.02233 0.98272 0.91846 1.20253 1.02389 0.94413 0.99728 1.25903 1.08791 1.01226 0.98833 1.84406 1.64755 1.13525 1.02042 1.24184 1.09742 0.98079 0.98422 1.20302 0.91602 0.98621 0.89429 1.60521 1.31532 1.36511 1.03261 1.21849 0.96786 0.97689 0.89279 1.21369 0.96712 0.98691 0.96214 1.18975 0.95558 0.94468 0.92267 1.21726 0.98301 1.37565 1.00463 0.92328 1.25992 0.99719 0.96730 0.97472 1.70106 1.29308 1.46947 1.11043 0.85386 0.79229 0.78050 0.78309 1.18660 1.20344 1.20217 0.93559 0.91965 0.91439 0.89518 0.92158 0.82334 0.79670 0.90675 0.92622 0.83764 0.91869 0.95333 0.93066 0.93089 0.98993 0.98860 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.84 71.98 0.71 -1.53 16 2 C -0.07 -1.15 5.56 29.85 0.17 -0.98 16 3 C -0.10 -2.05 5.06 -20.92 -0.11 -2.16 16 4 C -0.14 -2.40 9.96 21.22 0.21 -2.19 16 5 C -0.21 -3.66 11.23 66.72 0.75 -2.91 16 6 S 0.09 1.90 23.33 -56.49 -1.32 0.58 16 7 C -0.19 -4.36 6.02 24.59 0.15 -4.21 16 8 C 0.13 3.30 5.58 85.56 0.48 3.78 16 9 N -0.69 -20.33 6.49 -517.95 -3.36 -23.69 16 10 C 0.07 2.54 5.69 86.30 0.49 3.03 16 11 C -0.09 -3.89 5.41 30.60 0.17 -3.72 16 12 C 0.02 1.34 4.97 29.85 0.15 1.49 16 13 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 17 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H 0.05 0.81 7.27 -2.39 -0.02 0.79 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 1.25 8.11 -2.39 -0.02 1.23 16 25 H 0.06 1.17 7.29 -2.38 -0.02 1.15 16 26 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 27 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.32 6.51 -2.39 -0.02 1.31 16 30 H 0.34 9.67 8.49 -89.69 -0.76 8.91 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -64.77 320.97 1.76 -63.01 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.27 Total: 10.81 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 3.85 Total: -40.39 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -3.08 Total: -80.92 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.32 Total: 0.58 kcal Total: -64.77 1.76 -63.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087310467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.366 kcal (2) G-P(sol) polarization free energy of solvation -64.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds