Wall clock time and date at job start Mon Mar 30 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81400 * 109.46805 * 2 1 4 4 C 1.76204 * 102.99960 * 180.02562 * 3 2 1 5 5 C 1.39231 * 120.05167 * 180.02562 * 4 3 2 6 6 N 1.32008 * 120.07881 * 179.97438 * 5 4 3 7 7 C 1.32090 * 120.17524 * 0.02562 * 6 5 4 8 8 C 1.39137 * 120.09797 * 359.97438 * 7 6 5 9 9 N 1.38999 * 120.03814 * 180.02562 * 8 7 6 10 10 C 1.46495 * 119.99985 * 359.97438 * 9 8 7 11 11 H 1.08993 * 109.47291 * 34.99352 * 10 9 8 12 12 C 1.53002 * 109.47021 * 274.99303 * 10 9 8 13 13 C 1.50694 * 109.47137 * 154.99866 * 10 9 8 14 14 H 1.08000 * 120.00143 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00297 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99770 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 120.00186 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47401 * 89.99785 * 17 15 13 19 19 H 1.48500 * 109.47070 * 209.99763 * 17 15 13 20 20 H 1.48503 * 109.47456 * 329.99712 * 17 15 13 21 21 N 1.32751 * 119.92277 * 0.02562 * 8 7 6 22 22 H 1.08999 * 109.47412 * 60.00322 * 1 2 3 23 23 H 1.09001 * 109.47423 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47257 * 300.00179 * 1 2 3 25 25 H 1.08993 * 109.47287 * 239.99988 * 2 1 3 26 26 H 1.08998 * 109.46923 * 119.99874 * 2 1 3 27 27 H 1.08003 * 119.95842 * 359.95857 * 5 4 3 28 28 H 1.08000 * 119.95472 * 179.97438 * 7 6 5 29 29 H 0.97007 * 119.99692 * 179.97438 * 9 8 7 30 30 H 1.09005 * 109.47235 * 300.00527 * 12 10 9 31 31 H 1.08998 * 109.46768 * 59.99866 * 12 10 9 32 32 H 1.08993 * 109.47167 * 179.97438 * 12 10 9 33 33 H 0.97000 * 120.00231 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8854 1.5118 -0.0008 5 6 4.7140 2.6307 -0.0004 6 7 6.0257 2.4826 -0.0005 7 6 6.5574 1.2734 -0.0014 8 6 5.7362 0.1502 -0.0017 9 7 6.2970 -1.1217 -0.0022 10 6 7.7534 -1.2800 -0.0028 11 1 8.2058 -0.4825 0.5864 12 6 8.2734 -1.2101 -1.4401 13 6 8.1138 -2.6145 0.5973 14 1 7.3359 -3.2781 0.9449 15 6 9.4368 -2.9883 0.7027 16 7 10.3841 -2.1805 0.2791 17 14 9.8835 -4.6422 1.4473 18 1 9.9366 -5.6693 0.3760 19 1 11.2106 -4.5459 2.1068 20 1 8.8587 -5.0264 2.4510 21 7 4.4166 0.2946 -0.0017 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.2829 3.6210 -0.0003 28 1 7.6310 1.1564 -0.0019 29 1 5.7240 -1.9044 -0.0020 30 1 7.8208 -2.0077 -2.0294 31 1 8.0126 -0.2449 -1.8742 32 1 9.3569 -1.3275 -1.4405 33 1 11.3148 -2.4433 0.3535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092640135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:57 Heat of formation + Delta-G solvation = 20.569864 kcal Electronic energy + Delta-G solvation = -16010.388116 eV Core-core repulsion = 13389.326559 eV Total energy + Delta-G solvation = -2621.061557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82155 -37.95840 -35.39950 -34.53790 -33.67185 -31.84825 -29.76235 -27.37856 -25.88822 -25.08335 -23.96543 -22.39594 -19.55583 -18.69433 -18.09410 -17.60150 -16.96501 -16.70957 -16.22805 -15.84343 -15.58677 -15.38600 -14.58960 -14.03435 -13.82701 -13.36824 -13.22554 -13.03910 -12.88133 -12.67855 -12.58763 -12.51676 -12.36574 -12.23243 -12.14332 -11.54996 -11.42786 -11.14110 -10.59317 -10.13821 -9.14845 -8.39170 -8.22085 -6.38146 -0.15644 0.33648 0.35494 1.16750 1.42840 1.44502 1.53770 2.23290 2.46813 2.74568 3.08674 3.49115 3.59891 3.83950 4.01746 4.08324 4.23631 4.43717 4.54737 4.64544 4.89897 4.91714 4.93058 4.98395 5.19143 5.23044 5.38046 5.57313 5.71672 5.85676 6.03530 6.50689 6.64624 6.72061 7.02793 7.33687 8.82985 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030041 B = 0.004942 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.841282 B = 5664.023576 C = 6358.798997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 S -0.039 6.039 4 C 0.111 3.889 5 C -0.021 4.021 6 N -0.400 5.400 7 C -0.043 4.043 8 C 0.372 3.628 9 N -0.687 5.687 10 C 0.276 3.724 11 H 0.024 0.976 12 C -0.141 4.141 13 C -0.550 4.550 14 H 0.063 0.937 15 C 0.025 3.975 16 N -0.909 5.909 17 Si 0.966 3.034 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.271 1.271 21 N -0.532 5.532 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.192 0.808 28 H 0.159 0.841 29 H 0.400 0.600 30 H 0.032 0.968 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 4.670 -0.973 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.250 4.250 3 S 0.199 5.801 4 C -0.142 4.142 5 C -0.190 4.190 6 N -0.113 5.113 7 C -0.214 4.214 8 C 0.128 3.872 9 N -0.313 5.313 10 C 0.173 3.827 11 H 0.041 0.959 12 C -0.200 4.200 13 C -0.588 4.588 14 H 0.081 0.919 15 C -0.176 4.176 16 N -0.547 5.547 17 Si 0.791 3.209 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.195 1.195 21 N -0.262 5.262 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.209 0.791 28 H 0.176 0.824 29 H 0.235 0.765 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.886 5.596 -0.986 16.871 hybrid contribution 1.380 -2.316 0.304 2.713 sum -14.506 3.280 -0.682 14.888 Atomic orbital electron populations 1.21579 0.89709 1.04225 1.03646 1.23511 1.01113 0.94351 1.06013 1.85184 0.90886 1.13530 1.90541 1.24352 1.01501 0.91682 0.96677 1.23309 0.88562 0.99681 1.07399 1.68150 1.13293 1.24140 1.05741 1.23006 1.01255 0.87502 1.09617 1.19532 0.89140 0.88577 0.89956 1.45236 1.08302 1.02636 1.75168 1.18628 0.73792 0.96636 0.93612 0.95873 1.22030 1.03310 0.97542 0.97078 1.21412 0.92926 1.02636 1.41871 0.91923 1.25604 0.95960 1.00745 0.95315 1.69966 1.00645 1.37643 1.46404 0.85430 0.77527 0.79356 0.78556 1.19887 1.20770 1.19540 1.68329 1.10971 1.24142 1.22711 0.90952 0.89190 0.91011 0.89882 0.89982 0.79095 0.82429 0.76514 0.94890 0.95682 0.90640 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.92 71.98 0.71 -1.11 16 2 C -0.10 -2.10 5.94 71.98 0.43 -1.68 16 3 S -0.04 -0.92 21.92 -56.49 -1.24 -2.16 16 4 C 0.11 3.56 7.00 84.78 0.59 4.16 16 5 C -0.02 -0.68 10.97 84.91 0.93 0.25 16 6 N -0.40 -14.93 10.48 -194.04 -2.03 -16.97 16 7 C -0.04 -1.75 10.00 84.87 0.85 -0.90 16 8 C 0.37 15.02 7.64 132.96 1.02 16.04 16 9 N -0.69 -28.89 5.24 -327.86 -1.72 -30.61 16 10 C 0.28 13.17 2.25 44.25 0.10 13.27 16 11 H 0.02 1.22 6.46 -2.39 -0.02 1.20 16 12 C -0.14 -6.51 9.19 71.98 0.66 -5.85 16 13 C -0.55 -28.14 8.73 25.60 0.22 -27.92 16 14 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 15 C 0.02 1.28 5.30 84.66 0.45 1.73 16 16 N -0.91 -48.66 11.32 21.45 0.24 -48.42 16 17 Si 0.97 40.95 29.54 68.60 2.03 42.97 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 N -0.53 -19.47 9.63 -189.01 -1.82 -21.29 16 22 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.16 6.64 6.08 -2.91 -0.02 6.63 16 29 H 0.40 16.05 8.67 -92.70 -0.80 15.24 16 30 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.02 1.06 7.68 -2.39 -0.02 1.04 16 32 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 33 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -55.98 294.31 1.74 -54.23 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.32 Total: 24.25 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.97 Total: -2.01 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -5.33 Total: -117.29 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -1.24 Total: -2.16 kcal Total: -55.98 1.74 -54.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.803 kcal (2) G-P(sol) polarization free energy of solvation -55.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds