Wall clock time and date at job start Mon Mar 30 2020 06:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99965 * 2 1 4 4 H 1.48499 * 109.47141 * 269.99648 * 3 2 1 5 5 H 1.48496 * 109.46756 * 30.00311 * 3 2 1 6 6 H 1.48501 * 109.46580 * 150.00133 * 3 2 1 7 7 C 1.37881 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99444 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46710 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46978 * 179.97438 * 10 9 7 12 12 O 1.42897 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.35961 * 116.99998 * 185.12265 * 12 11 10 14 14 C 1.38949 * 120.06148 * 275.47874 * 13 12 11 15 15 F 1.35098 * 120.05241 * 0.02925 * 14 13 12 16 16 C 1.38293 * 119.90029 * 180.29882 * 14 13 12 17 17 C 1.38293 * 120.03038 * 359.44442 * 16 14 13 18 18 C 1.38218 * 120.12865 * 0.55885 * 17 16 14 19 19 C 1.38231 * 120.09284 * 359.72051 * 18 17 16 20 20 C 1.50696 * 120.01399 * 179.97438 * 19 18 17 21 21 N 1.46903 * 109.47274 * 256.94740 * 20 19 18 22 22 H 0.97000 * 119.99416 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47249 * 60.00071 * 9 7 2 24 24 H 1.08994 * 109.46981 * 299.99950 * 9 7 2 25 25 H 1.08997 * 109.47181 * 60.00061 * 10 9 7 26 26 H 1.08999 * 109.47759 * 300.00009 * 10 9 7 27 27 H 1.08997 * 109.46988 * 60.00097 * 11 10 9 28 28 H 1.08994 * 109.46973 * 300.00140 * 11 10 9 29 29 H 1.07998 * 119.98038 * 179.70548 * 16 14 13 30 30 H 1.08002 * 119.93815 * 180.28115 * 17 16 14 31 31 H 1.08000 * 119.95463 * 179.69537 * 18 17 16 32 32 H 1.08997 * 109.47257 * 16.94951 * 20 19 18 33 33 H 1.09000 * 109.46896 * 136.94931 * 20 19 18 34 34 H 1.00898 * 111.00426 * 174.03629 * 21 20 19 35 35 H 1.00903 * 110.99779 * 297.99037 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 8 2.4088 -6.0732 -0.0030 13 6 1.8927 -7.3264 -0.1109 14 6 1.4430 -7.9939 1.0219 15 9 1.5175 -7.3984 2.2322 16 6 0.9243 -9.2709 0.9091 17 6 0.8428 -9.8778 -0.3308 18 6 1.2898 -9.2151 -1.4584 19 6 1.8145 -7.9408 -1.3510 20 6 2.3018 -7.2200 -2.5814 21 7 3.7696 -7.2613 -2.6241 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8896 25 1 2.8726 -3.6047 0.8877 26 1 2.8713 -3.6040 -0.8922 27 1 0.8526 -5.0447 -0.8905 28 1 0.8546 -5.0449 0.8894 29 1 0.5789 -9.7927 1.7893 30 1 0.4333 -10.8734 -0.4177 31 1 1.2293 -9.6937 -2.4247 32 1 1.8987 -7.7053 -3.4703 33 1 1.9682 -6.1828 -2.5509 34 1 4.1175 -6.8706 -3.4869 35 1 4.1679 -6.7886 -1.8266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165203256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:55 Heat of formation + Delta-G solvation = -98.015695 kcal Electronic energy + Delta-G solvation = -18200.116716 eV Core-core repulsion = 15111.240071 eV Total energy + Delta-G solvation = -3088.876645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -49.95918 -41.01825 -38.61042 -36.01472 -35.63651 -33.73215 -31.40895 -30.81901 -28.69882 -26.11705 -25.13974 -23.43228 -22.49200 -22.17076 -19.10902 -18.52370 -18.23179 -17.84492 -16.98506 -16.59946 -16.53226 -16.32139 -15.98817 -15.57912 -15.44242 -15.00502 -14.39278 -14.33368 -13.90610 -13.74600 -13.13697 -13.01066 -12.96102 -12.82010 -12.54520 -12.46474 -12.17949 -11.81479 -11.60930 -11.28701 -10.94497 -10.60217 -9.97296 -9.63879 -9.58583 -8.24804 -6.36532 -0.01331 0.10322 1.39048 1.40605 1.52032 2.24526 2.39780 2.71549 3.08884 3.14985 3.63922 3.85482 3.87278 3.96446 4.11711 4.21123 4.26323 4.33825 4.38710 4.52777 4.67396 4.76524 4.91971 4.96041 5.05239 5.08223 5.27999 5.41102 5.42840 5.59835 5.71221 5.76224 6.09024 6.15681 6.40025 6.52883 6.78588 7.33090 8.87391 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.030170 B = 0.004395 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.863344 B = 6369.916781 C = 6875.787799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.030 3.970 10 C -0.091 4.091 11 C 0.080 3.920 12 O -0.340 6.340 13 C 0.043 3.957 14 C 0.043 3.957 15 F -0.151 7.151 16 C -0.143 4.143 17 C -0.086 4.086 18 C -0.098 4.098 19 C -0.081 4.081 20 C 0.104 3.896 21 N -0.844 5.844 22 H 0.265 0.735 23 H -0.001 1.001 24 H -0.007 1.007 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.040 0.960 29 H 0.160 0.840 30 H 0.177 0.823 31 H 0.165 0.835 32 H 0.106 0.894 33 H 0.024 0.976 34 H 0.353 0.647 35 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.979 -20.835 -4.395 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.129 4.129 11 C 0.006 3.994 12 O -0.257 6.257 13 C -0.002 4.002 14 C 0.024 3.976 15 F -0.130 7.130 16 C -0.162 4.162 17 C -0.104 4.104 18 C -0.117 4.117 19 C -0.082 4.082 20 C -0.026 4.026 21 N -0.374 5.374 22 H 0.074 0.926 23 H 0.017 0.983 24 H 0.012 0.988 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.177 0.823 30 H 0.194 0.806 31 H 0.183 0.817 32 H 0.125 0.875 33 H 0.042 0.958 34 H 0.167 0.833 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.940 -21.421 -4.306 21.936 hybrid contribution -0.089 2.403 0.584 2.474 sum 1.851 -19.018 -3.723 19.467 Atomic orbital electron populations 1.70091 1.07822 1.27980 1.51317 1.25983 0.95794 1.03408 0.94436 0.85403 0.78593 0.78151 0.78652 1.19475 1.20600 1.18846 1.21606 0.93602 0.92018 1.51145 0.92068 1.18902 0.94139 0.92414 0.95305 1.21386 0.98654 0.91111 1.01702 1.22768 0.91435 0.85183 0.99982 1.86045 1.34184 1.11754 1.93751 1.18990 1.01728 0.86871 0.92581 1.18646 1.04286 0.94717 0.79982 1.91455 1.94546 1.84294 1.42729 1.21454 1.00983 0.92235 1.01492 1.21495 0.97397 1.01403 0.90088 1.21440 0.96809 0.92282 1.01127 1.20245 0.98583 0.96621 0.92800 1.20615 0.89373 0.97479 0.95163 1.58803 1.05396 1.64647 1.08594 0.92592 0.98264 0.98818 0.92706 0.91869 0.92745 0.94146 0.82261 0.80560 0.81726 0.87533 0.95777 0.83317 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.40 7.74 -2.92 -0.02 3.38 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.09 -3.99 5.52 30.60 0.17 -3.82 16 11 C 0.08 3.09 5.91 71.98 0.43 3.52 16 12 O -0.34 -12.16 8.85 -93.11 -0.82 -12.99 16 13 C 0.04 1.33 5.70 22.53 0.13 1.46 16 14 C 0.04 1.27 7.31 22.45 0.16 1.43 16 15 F -0.15 -5.15 17.11 44.97 0.77 -4.38 16 16 C -0.14 -2.90 10.02 22.30 0.22 -2.67 16 17 C -0.09 -1.29 10.04 22.28 0.22 -1.07 16 18 C -0.10 -1.69 9.66 22.26 0.22 -1.47 16 19 C -0.08 -1.98 5.45 -19.78 -0.11 -2.09 16 20 C 0.10 2.34 6.53 85.56 0.56 2.90 16 21 N -0.84 -18.71 9.58 -190.01 -1.82 -20.53 16 22 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 23 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 24 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.05 2.00 7.78 -2.39 -0.02 1.98 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.17 1.76 8.01 -2.91 -0.02 1.73 16 32 H 0.11 1.79 7.97 -2.39 -0.02 1.77 16 33 H 0.02 0.64 7.44 -2.39 -0.02 0.62 16 34 H 0.35 6.32 9.08 -89.70 -0.81 5.51 16 35 H 0.34 8.75 8.68 -89.69 -0.78 7.97 16 Total: -1.00 -68.63 307.22 2.79 -65.84 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.49 Total: 13.08 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 2.84 Total: -30.84 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.54 Total: -77.18 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.82 Total: -12.99 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.77 Total: -4.38 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.63 2.79 -65.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165203256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.176 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds