Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00179 * 2 1 4 4 H 1.48497 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47300 * 300.00634 * 3 2 1 6 6 H 1.48504 * 109.46981 * 60.00316 * 3 2 1 7 7 C 1.37881 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47210 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47530 * 179.97438 * 10 9 7 12 12 C 1.35958 * 117.00448 * 179.97438 * 11 10 9 13 13 C 1.38951 * 120.06561 * 269.98354 * 12 11 10 14 14 F 1.35100 * 120.04528 * 0.03727 * 13 12 11 15 15 C 1.38281 * 119.90721 * 180.02562 * 13 12 11 16 16 C 1.38304 * 120.03083 * 0.02562 * 15 13 12 17 17 C 1.38222 * 120.12175 * 359.69732 * 16 15 13 18 18 C 1.38217 * 120.09717 * 0.55620 * 17 16 15 19 19 C 1.50701 * 120.01697 * 179.74651 * 18 17 16 20 20 C 1.52997 * 109.47212 * 264.72340 * 19 18 17 21 21 N 1.46894 * 109.47515 * 179.97438 * 20 19 18 22 22 H 0.96999 * 120.00025 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47648 * 59.99729 * 9 7 2 24 24 H 1.09002 * 109.47155 * 299.99853 * 9 7 2 25 25 H 1.09003 * 109.47022 * 59.99362 * 10 9 7 26 26 H 1.09002 * 109.46956 * 299.99992 * 10 9 7 27 27 H 1.08001 * 119.98736 * 179.97438 * 15 13 12 28 28 H 1.07994 * 119.94030 * 179.97438 * 16 15 13 29 29 H 1.08004 * 119.94735 * 180.30049 * 17 16 15 30 30 H 1.09002 * 109.47060 * 24.72395 * 19 18 17 31 31 H 1.09001 * 109.47380 * 144.72483 * 19 18 17 32 32 H 1.09002 * 109.47153 * 299.99998 * 20 19 18 33 33 H 1.08998 * 109.47533 * 59.99628 * 20 19 18 34 34 H 1.00905 * 110.99991 * 56.04757 * 21 20 19 35 35 H 1.00903 * 111.00455 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 8 1.5307 -4.8996 -0.0032 12 6 2.2711 -6.0399 -0.0047 13 6 2.6491 -6.6229 -1.2080 14 9 2.2819 -6.0571 -2.3786 15 6 3.4017 -7.7830 -1.2057 16 6 3.7771 -8.3621 -0.0072 17 6 3.4066 -7.7800 1.1905 18 6 2.6500 -6.6234 1.1943 19 6 2.2423 -5.9935 2.5012 20 6 0.8392 -6.4705 2.8815 21 7 0.4420 -5.8569 4.1557 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5574 0.8880 25 1 2.8719 -3.6051 0.8873 26 1 2.8718 -3.6035 -0.8927 27 1 3.6958 -8.2375 -2.1403 28 1 4.3645 -9.2683 -0.0071 29 1 3.7055 -8.2320 2.1248 30 1 2.9480 -6.2830 3.2799 31 1 2.2413 -4.9084 2.3969 32 1 0.1335 -6.1809 2.1029 33 1 0.8400 -7.5554 2.9858 34 1 0.4955 -4.8506 4.1048 35 1 -0.4822 -6.1562 4.4287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165380736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = -98.544781 kcal Electronic energy + Delta-G solvation = -18445.208054 eV Core-core repulsion = 15356.308466 eV Total energy + Delta-G solvation = -3088.899588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.93535 -41.01572 -38.50579 -36.41163 -35.48899 -32.86232 -32.40507 -30.51994 -28.51532 -26.86410 -24.05421 -23.61174 -22.93852 -22.10801 -19.26117 -18.40786 -18.09448 -17.82099 -16.97435 -16.60205 -16.53913 -16.07905 -15.92485 -15.84296 -15.31984 -14.95718 -14.42770 -14.36328 -13.94751 -13.48097 -13.34443 -13.14487 -12.89156 -12.69153 -12.52490 -12.46247 -12.22529 -12.04415 -11.57727 -11.46731 -10.90378 -10.61612 -9.79320 -9.67306 -9.60497 -8.29150 -6.43270 0.01681 0.11480 1.38701 1.39771 1.53392 2.26884 2.41400 2.85540 3.04899 3.17598 3.51183 3.81026 3.98220 4.13214 4.20858 4.23751 4.28117 4.31516 4.34300 4.49200 4.67323 4.75985 4.87845 5.02110 5.09190 5.15418 5.28688 5.31700 5.43756 5.47336 5.63868 5.78668 6.04958 6.11592 6.49995 6.53121 6.70996 7.27018 8.83990 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.005790 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.805864 B = 4834.759448 C = 5742.209111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.035 3.965 10 C 0.095 3.905 11 O -0.352 6.352 12 C 0.037 3.963 13 C 0.043 3.957 14 F -0.154 7.154 15 C -0.142 4.142 16 C -0.083 4.083 17 C -0.104 4.104 18 C -0.083 4.083 19 C -0.073 4.073 20 C 0.075 3.925 21 N -0.851 5.851 22 H 0.267 0.733 23 H -0.009 1.009 24 H 0.002 0.998 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.161 0.839 28 H 0.180 0.820 29 H 0.169 0.831 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.007 0.993 33 H 0.088 0.912 34 H 0.341 0.659 35 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.917 -17.966 4.164 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.084 0.916 9 C -0.002 4.002 10 C 0.021 3.979 11 O -0.270 6.270 12 C -0.008 4.008 13 C 0.024 3.976 14 F -0.133 7.133 15 C -0.161 4.161 16 C -0.101 4.101 17 C -0.121 4.121 18 C -0.085 4.085 19 C -0.111 4.111 20 C -0.056 4.056 21 N -0.380 5.380 22 H 0.076 0.924 23 H 0.009 0.991 24 H 0.020 0.980 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.179 0.821 28 H 0.198 0.802 29 H 0.186 0.814 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.175 -18.206 4.427 20.442 hybrid contribution -0.963 1.848 -1.232 2.421 sum 7.211 -16.358 3.195 18.160 Atomic orbital electron populations 1.70121 1.08016 1.28197 1.50565 1.26018 0.95813 1.03583 0.94001 0.85247 0.78960 0.77865 0.78057 1.18344 1.20206 1.19808 1.21401 0.93625 0.91156 1.52285 0.91607 1.18892 0.94338 0.91249 0.95710 1.22751 0.94972 0.81077 0.99058 1.86087 1.34036 1.12541 1.94298 1.19140 0.98786 0.90309 0.92521 1.18685 1.01757 0.96855 0.80309 1.91446 1.90302 1.85183 1.46332 1.21443 0.98676 0.93691 1.02276 1.21503 0.98228 1.00487 0.89881 1.21465 0.96499 0.93500 1.00680 1.20233 0.97697 0.97287 0.93247 1.20467 0.97903 0.99541 0.93156 1.21622 0.94390 0.99917 0.89672 1.58833 1.34011 1.13739 1.31463 0.92381 0.99076 0.97969 0.92836 0.94693 0.82115 0.80233 0.81373 0.87921 0.93093 0.97498 0.89417 0.84716 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.98 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.04 2.01 5.34 29.85 0.16 2.16 16 10 C 0.09 4.47 5.67 71.98 0.41 4.87 16 11 O -0.35 -15.61 9.20 -93.08 -0.86 -16.47 16 12 C 0.04 1.32 5.70 22.53 0.13 1.44 16 13 C 0.04 1.43 7.31 22.45 0.16 1.59 16 14 F -0.15 -5.90 17.11 44.97 0.77 -5.13 16 15 C -0.14 -3.15 10.02 22.30 0.22 -2.93 16 16 C -0.08 -1.34 10.04 22.28 0.22 -1.12 16 17 C -0.10 -1.93 9.67 22.26 0.22 -1.71 16 18 C -0.08 -2.30 5.15 -19.78 -0.10 -2.40 16 19 C -0.07 -1.98 5.33 29.85 0.16 -1.82 16 20 C 0.07 1.95 6.77 86.30 0.58 2.54 16 21 N -0.85 -20.50 9.62 -186.73 -1.80 -22.30 16 22 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.05 2.35 7.17 -2.39 -0.02 2.34 16 26 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 29 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.10 2.26 8.05 -2.39 -0.02 2.24 16 31 H 0.05 1.69 6.42 -2.39 -0.02 1.68 16 32 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.34 8.86 8.99 -89.69 -0.81 8.06 16 35 H 0.35 7.10 9.08 -89.69 -0.81 6.29 16 Total: -1.00 -71.17 306.29 2.77 -68.39 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.51 Total: 14.55 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 2.86 Total: -28.31 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -1.51 Total: -79.35 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.86 Total: -16.47 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.77 Total: -5.13 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.17 2.77 -68.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165380736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.152 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds