Wall clock time and date at job start Mon Mar 30 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38200 * 119.98951 * 2 1 4 4 C 1.38586 * 120.04027 * 179.97438 * 3 2 1 5 5 O 1.36061 * 119.98609 * 179.97438 * 4 3 2 6 6 C 1.42903 * 116.99756 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46988 * 89.99354 * 13 11 9 15 15 H 1.48498 * 109.47211 * 210.00040 * 13 11 9 16 16 H 1.48506 * 109.46856 * 330.00220 * 13 11 9 17 17 C 1.38923 * 120.02444 * 0.25770 * 4 3 2 18 18 F 1.35108 * 120.00915 * 179.72095 * 17 4 3 19 19 C 1.38248 * 119.98442 * 359.46428 * 17 4 3 20 20 C 1.38823 * 119.99338 * 179.97438 * 2 1 3 21 21 N 1.39927 * 120.00917 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.47068 * 90.00096 * 1 2 3 23 23 H 1.08997 * 109.47246 * 209.99897 * 1 2 3 24 24 H 1.09003 * 109.47025 * 330.00109 * 1 2 3 25 25 H 1.07999 * 119.97945 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47382 * 59.99828 * 6 5 4 27 27 H 1.09001 * 109.46938 * 299.99815 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 30 30 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 31 31 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 32 32 H 0.97000 * 119.99425 * 180.02562 * 12 11 9 33 33 H 1.07990 * 120.02790 * 180.27723 * 19 17 4 34 34 H 0.97000 * 120.00050 * 0.02562 * 21 20 2 35 35 H 0.97002 * 119.99997 * 179.97438 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1970 0.0000 4 6 3.5836 1.1982 0.0005 5 8 4.2626 2.3773 0.0000 6 6 3.4829 3.5749 -0.0005 7 6 4.4136 4.7893 -0.0017 8 6 3.5788 6.0715 -0.0016 9 6 4.4954 7.2676 -0.0022 10 1 5.5663 7.1274 -0.0021 11 6 3.9670 8.5411 -0.0027 12 7 2.6629 8.7119 -0.0033 13 14 5.1032 10.0239 -0.0041 14 1 5.4038 10.4158 -1.4046 15 1 4.4421 11.1547 0.6955 16 1 6.3670 9.6797 0.6956 17 6 4.2798 -0.0040 -0.0043 18 9 5.6309 -0.0024 -0.0095 19 6 3.5899 -1.2020 0.0015 20 6 2.2009 -1.2023 0.0005 21 7 1.5014 -2.4142 0.0016 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6573 2.1320 0.0004 26 1 2.8540 3.5994 0.8894 27 1 2.8541 3.5986 -0.8906 28 1 5.0427 4.7658 0.8881 29 1 5.0421 4.7645 -0.8918 30 1 2.9494 6.0953 -0.8912 31 1 2.9505 6.0960 0.8887 32 1 2.2912 9.6079 -0.0041 33 1 4.1304 -2.1369 0.0022 34 1 0.5314 -2.4142 0.0016 35 1 1.9864 -3.2542 0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166537381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:58 Heat of formation + Delta-G solvation = -79.788982 kcal Electronic energy + Delta-G solvation = -17786.972756 eV Core-core repulsion = 14698.886480 eV Total energy + Delta-G solvation = -3088.086276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.63592 -40.00284 -38.05700 -34.33458 -33.58322 -32.44421 -31.56990 -28.49032 -27.31427 -26.12366 -23.72270 -22.19003 -21.31919 -20.18825 -18.00298 -17.61218 -17.18674 -16.19863 -16.03082 -15.46218 -15.07504 -15.05109 -14.54859 -14.38690 -13.92990 -13.69363 -13.14019 -13.03695 -12.34159 -12.25360 -12.17824 -11.98100 -11.63086 -11.28229 -11.19423 -10.80524 -10.57920 -10.43866 -9.88504 -9.57103 -9.51141 -9.14531 -8.76298 -8.37274 -7.24710 -6.02722 -4.04959 1.09472 1.49589 3.32481 3.38276 3.41388 3.46892 3.59957 3.65899 4.40126 4.46119 4.65837 4.79094 5.00613 5.33602 5.34436 5.41695 5.46979 5.56673 5.57767 5.70034 5.78407 6.00165 6.03855 6.10215 6.32984 6.51871 6.59318 6.76884 7.01844 7.22632 7.54476 7.61127 7.70233 7.73324 7.96261 8.38576 9.01297 9.59324 11.08829 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.037017 B = 0.003750 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.226066 B = 7465.457587 C = 8190.629739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.134 4.134 3 C -0.136 4.136 4 C 0.059 3.941 5 O -0.312 6.312 6 C 0.060 3.940 7 C -0.108 4.108 8 C 0.025 3.975 9 C -0.520 4.520 10 H 0.057 0.943 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.104 3.896 18 F -0.133 7.133 19 C -0.195 4.195 20 C 0.200 3.800 21 N -0.878 5.878 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.141 0.859 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.136 0.864 34 H 0.398 0.602 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.803 -21.853 -0.005 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 C -0.156 4.156 4 C 0.011 3.989 5 O -0.226 6.226 6 C -0.014 4.014 7 C -0.146 4.146 8 C -0.012 4.012 9 C -0.559 4.559 10 H 0.076 0.924 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.084 3.916 18 F -0.111 7.111 19 C -0.219 4.219 20 C 0.096 3.904 21 N -0.421 5.421 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.158 0.842 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.228 0.772 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.653 -21.606 0.001 22.101 hybrid contribution 0.382 0.601 -0.010 0.713 sum -4.271 -21.004 -0.009 21.434 Atomic orbital electron populations 1.20612 0.90815 1.02607 1.02197 1.19198 0.96043 0.90953 1.07693 1.20927 0.92006 0.98872 1.03772 1.18834 0.90841 0.86125 1.03050 1.86192 1.35891 1.11923 1.88599 1.23189 0.95330 0.82251 1.00677 1.21717 0.98475 0.92383 1.02040 1.19045 0.95096 0.89579 0.97493 1.21200 0.93181 0.90755 1.50724 0.92435 1.25021 0.95081 0.99146 0.95213 1.69963 1.10571 1.22206 1.50795 0.86549 0.80853 0.82218 0.78147 1.20613 1.21207 1.19783 1.16633 0.76842 0.91436 1.06707 1.91488 1.28364 1.97242 1.94053 1.20205 0.92676 0.96757 1.12258 1.17084 0.90000 0.86418 0.96869 1.42416 1.08809 1.04610 1.86258 0.91278 0.92112 0.91048 0.84154 0.92422 0.92431 0.92177 0.92176 0.96315 0.96309 0.92948 0.84615 0.77229 0.77574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.57 36.00 0.34 -0.54 16 2 C -0.13 -1.53 5.90 -104.42 -0.62 -2.15 16 3 C -0.14 -1.87 8.69 -39.47 -0.34 -2.22 16 4 C 0.06 0.96 6.69 -39.20 -0.26 0.70 16 5 O -0.31 -5.80 10.00 -19.93 -0.20 -6.00 16 6 C 0.06 1.09 4.74 37.16 0.18 1.27 16 7 C -0.11 -2.33 5.52 -26.73 -0.15 -2.48 16 8 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 9 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 10 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.10 1.57 7.30 -39.32 -0.29 1.29 16 18 F -0.13 -2.17 17.11 2.25 0.04 -2.14 16 19 C -0.20 -2.32 9.87 -39.34 -0.39 -2.71 16 20 C 0.20 2.13 6.74 -83.70 -0.56 1.56 16 21 N -0.88 -6.07 9.00 32.44 0.29 -5.78 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 24 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.14 1.83 6.29 -52.49 -0.33 1.50 16 26 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 27 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.40 2.11 6.82 -40.82 -0.28 1.83 16 35 H 0.40 1.99 8.84 -40.82 -0.36 1.63 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -31.72 301.52 -6.85 -38.57 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.60 Total: -1.47 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.64 Total: -18.39 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 1.03 Total: -31.84 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.20 Total: -6.00 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.72 -6.85 -38.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166537381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.220 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds