Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38200 * 119.98951 * 2 1 4 4 C 1.38586 * 120.04027 * 179.97438 * 3 2 1 5 5 O 1.36061 * 119.98609 * 179.97438 * 4 3 2 6 6 C 1.42903 * 116.99756 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46988 * 89.99354 * 13 11 9 15 15 H 1.48498 * 109.47211 * 210.00040 * 13 11 9 16 16 H 1.48506 * 109.46856 * 330.00220 * 13 11 9 17 17 C 1.38923 * 120.02444 * 0.25770 * 4 3 2 18 18 F 1.35108 * 120.00915 * 179.72095 * 17 4 3 19 19 C 1.38248 * 119.98442 * 359.46428 * 17 4 3 20 20 C 1.38823 * 119.99338 * 179.97438 * 2 1 3 21 21 N 1.39927 * 120.00917 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.47068 * 90.00096 * 1 2 3 23 23 H 1.08997 * 109.47246 * 209.99897 * 1 2 3 24 24 H 1.09003 * 109.47025 * 330.00109 * 1 2 3 25 25 H 1.07999 * 119.97945 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47382 * 59.99828 * 6 5 4 27 27 H 1.09001 * 109.46938 * 299.99815 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 30 30 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 31 31 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 32 32 H 0.97000 * 119.99425 * 180.02562 * 12 11 9 33 33 H 1.07990 * 120.02790 * 180.27723 * 19 17 4 34 34 H 0.97000 * 120.00050 * 0.02562 * 21 20 2 35 35 H 0.97002 * 119.99997 * 179.97438 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1970 0.0000 4 6 3.5836 1.1982 0.0005 5 8 4.2626 2.3773 0.0000 6 6 3.4829 3.5749 -0.0005 7 6 4.4136 4.7893 -0.0017 8 6 3.5788 6.0715 -0.0016 9 6 4.4954 7.2676 -0.0022 10 1 5.5663 7.1274 -0.0021 11 6 3.9670 8.5411 -0.0027 12 7 2.6629 8.7119 -0.0033 13 14 5.1032 10.0239 -0.0041 14 1 5.4038 10.4158 -1.4046 15 1 4.4421 11.1547 0.6955 16 1 6.3670 9.6797 0.6956 17 6 4.2798 -0.0040 -0.0043 18 9 5.6309 -0.0024 -0.0095 19 6 3.5899 -1.2020 0.0015 20 6 2.2009 -1.2023 0.0005 21 7 1.5014 -2.4142 0.0016 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6573 2.1320 0.0004 26 1 2.8540 3.5994 0.8894 27 1 2.8541 3.5986 -0.8906 28 1 5.0427 4.7658 0.8881 29 1 5.0421 4.7645 -0.8918 30 1 2.9494 6.0953 -0.8912 31 1 2.9505 6.0960 0.8887 32 1 2.2912 9.6079 -0.0041 33 1 4.1304 -2.1369 0.0022 34 1 0.5314 -2.4142 0.0016 35 1 1.9864 -3.2542 0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166537381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = -99.631309 kcal Electronic energy + Delta-G solvation = -17787.833184 eV Core-core repulsion = 14698.886480 eV Total energy + Delta-G solvation = -3088.946703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.80764 -41.07983 -39.20389 -36.08055 -34.76414 -33.62119 -33.18780 -29.58524 -28.82807 -27.27423 -25.33609 -23.51422 -22.37495 -21.89380 -19.11131 -18.68283 -18.49714 -17.99830 -17.35500 -16.49539 -16.40814 -16.39038 -15.98864 -15.49071 -14.98751 -14.92305 -14.52865 -14.29077 -14.02617 -13.66217 -13.22912 -13.07852 -12.87470 -12.74184 -12.57369 -12.45078 -12.38084 -11.94601 -11.60330 -11.54140 -11.24723 -10.68939 -10.56742 -9.74088 -8.22243 -8.17446 -6.32942 0.10744 0.47311 1.40843 1.42014 1.53445 2.20683 2.42980 2.61596 2.87621 3.11430 3.40826 3.71791 3.91147 4.04744 4.06774 4.17932 4.44504 4.50335 4.60299 4.73378 4.81992 4.84026 4.88891 4.93122 5.03641 5.11705 5.28187 5.39802 5.47060 5.65652 5.66331 5.80242 6.19895 6.39618 6.56972 6.81860 7.03213 7.36080 8.89747 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.037017 B = 0.003750 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.226066 B = 7465.457587 C = 8190.629739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.135 4.135 3 C -0.142 4.142 4 C 0.020 3.980 5 O -0.335 6.335 6 C 0.073 3.927 7 C -0.098 4.098 8 C 0.031 3.969 9 C -0.547 4.547 10 H 0.058 0.942 11 C 0.003 3.997 12 N -0.930 5.930 13 Si 0.966 3.034 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.266 1.266 17 C 0.081 3.919 18 F -0.148 7.148 19 C -0.194 4.194 20 C 0.213 3.787 21 N -0.858 5.858 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.141 0.859 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.265 0.735 33 H 0.161 0.839 34 H 0.410 0.590 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 -23.421 -0.011 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.140 4.140 3 C -0.161 4.161 4 C -0.027 4.027 5 O -0.251 6.251 6 C -0.002 4.002 7 C -0.135 4.135 8 C -0.007 4.007 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.190 1.190 17 C 0.061 3.939 18 F -0.127 7.127 19 C -0.217 4.217 20 C 0.106 3.894 21 N -0.402 5.402 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.159 0.841 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.178 0.822 34 H 0.242 0.758 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.431 -23.233 -0.006 23.860 hybrid contribution 0.509 0.919 -0.010 1.051 sum -4.921 -22.314 -0.015 22.850 Atomic orbital electron populations 1.20708 0.88384 1.03868 1.03292 1.19558 0.97773 0.90371 1.06341 1.21035 0.91148 1.00050 1.03873 1.19118 0.91972 0.85330 1.06275 1.86089 1.36667 1.12649 1.89652 1.22858 0.94289 0.81566 1.01452 1.21440 0.98239 0.92244 1.01606 1.18897 0.94816 0.91203 0.95736 1.21630 0.93672 0.92155 1.51070 0.92374 1.25944 0.96727 1.02354 0.94537 1.70077 1.12369 1.23192 1.51348 0.85433 0.78817 0.78170 0.78554 1.19698 1.20452 1.18986 1.17004 0.76428 0.92299 1.08165 1.91438 1.29510 1.97358 1.94386 1.20438 0.93334 0.96494 1.11457 1.17166 0.89746 0.87526 0.94925 1.42403 1.09520 1.03849 1.84409 0.90118 0.89686 0.91078 0.84126 0.91663 0.91675 0.92577 0.92551 0.98000 0.97994 0.92593 0.82166 0.75822 0.76035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.57 71.24 0.68 -0.77 16 2 C -0.14 -2.82 5.90 -19.73 -0.12 -2.93 16 3 C -0.14 -3.84 8.69 22.34 0.19 -3.65 16 4 C 0.02 0.66 6.69 22.52 0.15 0.81 16 5 O -0.34 -12.92 10.00 -94.25 -0.94 -13.86 16 6 C 0.07 2.74 4.74 71.98 0.34 3.08 16 7 C -0.10 -4.33 5.52 30.59 0.17 -4.16 16 8 C 0.03 1.63 4.97 29.85 0.15 1.78 16 9 C -0.55 -31.77 9.11 25.60 0.23 -31.53 16 10 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 11 C 0.00 0.14 5.46 84.65 0.46 0.61 16 12 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 13 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 C 0.08 2.46 7.30 22.44 0.16 2.63 16 18 F -0.15 -4.97 17.11 44.97 0.77 -4.20 16 19 C -0.19 -4.26 9.87 22.43 0.22 -4.04 16 20 C 0.21 3.94 6.74 38.15 0.26 4.20 16 21 N -0.86 -8.45 9.00 -51.28 -0.46 -8.91 16 22 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 0.74 6.54 -2.39 -0.02 0.73 16 24 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 25 H 0.14 3.67 6.29 -2.91 -0.02 3.66 16 26 H 0.07 2.30 7.66 -2.39 -0.02 2.28 16 27 H 0.07 2.30 7.66 -2.39 -0.02 2.28 16 28 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.16 2.62 8.06 -2.92 -0.02 2.60 16 34 H 0.41 2.50 6.82 -92.71 -0.63 1.87 16 35 H 0.41 2.40 8.84 -92.71 -0.82 1.58 16 Total: -1.00 -69.36 301.52 4.25 -65.12 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -0.33 Total: 5.15 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 2.91 Total: -33.98 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.18 Total: -64.92 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.94 Total: -13.86 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.77 Total: -4.20 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -69.36 4.25 -65.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166537381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.516 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds