Wall clock time and date at job start Mon Mar 30 2020 06:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34237 * 126.52568 * 2 1 4 4 C 1.34058 * 108.23888 * 179.97438 * 3 2 1 5 5 N 1.29916 * 109.26315 * 359.97438 * 4 3 2 6 6 C 1.36108 * 108.47604 * 359.75550 * 5 4 3 7 7 C 1.47274 * 126.46412 * 180.24248 * 6 5 4 8 8 O 1.21530 * 119.99910 * 180.17046 * 7 6 5 9 9 O 1.34774 * 119.99658 * 0.17646 * 7 6 5 10 10 C 1.45205 * 116.99783 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47380 * 300.00243 * 11 10 9 13 13 C 1.53007 * 109.47260 * 60.00053 * 11 10 9 14 14 C 1.50699 * 109.47395 * 179.97438 * 11 10 9 15 15 H 1.08004 * 119.99710 * 0.02562 * 14 11 10 16 16 C 1.37872 * 120.00710 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99760 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00454 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46868 * 89.99990 * 18 16 14 20 20 H 1.48494 * 109.47287 * 210.00032 * 18 16 14 21 21 H 1.48497 * 109.46878 * 330.00158 * 18 16 14 22 22 H 1.08995 * 109.47411 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46596 * 120.02270 * 1 2 3 24 24 H 1.09004 * 109.46950 * 240.02090 * 1 2 3 25 25 H 1.07994 * 125.36810 * 180.02562 * 4 3 2 26 26 H 1.08995 * 109.46911 * 299.99590 * 10 9 7 27 27 H 1.09006 * 109.46644 * 59.99904 * 10 9 7 28 28 H 1.08998 * 109.47312 * 59.99998 * 12 11 10 29 29 H 1.09008 * 109.47027 * 180.02562 * 12 11 10 30 30 H 1.09008 * 109.47188 * 299.99778 * 12 11 10 31 31 H 1.09002 * 109.46672 * 60.00051 * 13 11 10 32 32 H 1.08994 * 109.47286 * 179.97438 * 13 11 10 33 33 H 1.08994 * 109.46864 * 300.00256 * 13 11 10 34 34 H 0.97003 * 120.00026 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3060 1.0787 0.0000 4 6 3.5789 0.6581 0.0006 5 7 3.6010 -0.6409 0.0015 6 6 2.3177 -1.0942 0.0070 7 6 1.8868 -2.5024 0.0148 8 8 0.7026 -2.7756 0.0161 9 8 2.8058 -3.4882 0.0207 10 6 2.3090 -4.8526 0.0288 11 6 3.4899 -5.8253 0.0340 12 6 4.3416 -5.6002 -1.2169 13 6 4.3427 -5.5857 1.2815 14 6 2.9743 -7.2414 0.0431 15 1 1.9106 -7.4287 0.0446 16 6 3.8603 -8.2977 0.0494 17 7 5.1555 -8.0695 0.0481 18 14 3.2211 -10.0529 0.0600 19 1 3.0518 -10.5264 -1.3373 20 1 4.1910 -10.9287 0.7653 21 1 1.9124 -10.0989 0.7602 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3632 -0.5142 -0.8898 24 1 -0.3633 -0.5135 0.8902 25 1 4.4487 1.2981 0.0011 26 1 1.7019 -5.0129 0.9198 27 1 1.7018 -5.0234 -0.8602 28 1 4.7146 -4.5760 -1.2230 29 1 5.1827 -6.2936 -1.2134 30 1 3.7341 -5.7709 -2.1057 31 1 3.7359 -5.7461 2.1727 32 1 5.1837 -6.2789 1.2854 33 1 4.7156 -4.5615 1.2754 34 1 5.7789 -8.8127 0.0530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184765809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:33 Heat of formation + Delta-G solvation = -91.940280 kcal Electronic energy + Delta-G solvation = -18685.517554 eV Core-core repulsion = 15584.531569 eV Total energy + Delta-G solvation = -3100.985985 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.52383 -41.28587 -38.35723 -36.65574 -35.95387 -33.51036 -33.26376 -29.00177 -27.60790 -27.55026 -27.08628 -25.12285 -23.23488 -21.75771 -20.76010 -19.44983 -18.10129 -18.02163 -17.76777 -17.14893 -17.00655 -16.46930 -15.77641 -15.06463 -14.79709 -14.69445 -14.56726 -14.00436 -13.66196 -13.38464 -13.37428 -13.15115 -12.85501 -12.62422 -12.52242 -12.35033 -12.14159 -11.96738 -11.75931 -11.69192 -11.30638 -11.23707 -10.75622 -10.41179 -10.07864 -8.04132 -6.23144 -0.16578 0.90866 1.38414 1.44701 1.46356 1.55519 1.78402 1.94853 2.45577 3.11600 3.19121 3.50067 3.78479 4.16578 4.21767 4.24305 4.30898 4.55377 4.57470 4.79270 4.83347 5.01774 5.03695 5.10642 5.18188 5.20404 5.31253 5.48875 5.60298 5.63196 6.02859 6.14855 6.32872 6.37944 6.71637 6.82172 7.44942 8.95978 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.044645 B = 0.004781 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.024163 B = 5855.570087 C = 6286.226969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.070 3.930 3 O -0.190 6.190 4 C 0.202 3.798 5 N -0.496 5.496 6 C -0.100 4.100 7 C 0.538 3.462 8 O -0.524 6.524 9 O -0.341 6.341 10 C 0.095 3.905 11 C 0.061 3.939 12 C -0.117 4.117 13 C -0.117 4.117 14 C -0.533 4.533 15 H 0.053 0.947 16 C 0.026 3.974 17 N -0.901 5.901 18 Si 0.957 3.043 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.271 1.271 22 H 0.117 0.883 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.311 0.689 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 18.578 -0.090 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.013 3.987 3 O -0.076 6.076 4 C -0.027 4.027 5 N -0.223 5.223 6 C -0.216 4.216 7 C 0.383 3.617 8 O -0.415 6.415 9 O -0.256 6.256 10 C 0.022 3.978 11 C 0.061 3.939 12 C -0.175 4.175 13 C -0.175 4.175 14 C -0.571 4.571 15 H 0.071 0.929 16 C -0.174 4.174 17 N -0.540 5.540 18 Si 0.783 3.217 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.196 1.196 22 H 0.135 0.865 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.325 0.675 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.034 17.957 -0.087 18.650 hybrid contribution -0.544 -0.933 -0.005 1.080 sum -5.578 17.024 -0.092 17.915 Atomic orbital electron populations 1.20677 0.80216 1.06339 1.05501 1.24142 0.96218 0.82550 0.95797 1.84452 1.18952 1.34939 1.69286 1.29296 0.85899 0.90380 0.97166 1.70840 1.21633 1.12176 1.17699 1.20361 0.90691 0.92124 1.18458 1.19935 0.83747 0.85488 0.72507 1.90791 1.18032 1.84658 1.48006 1.86677 1.39225 1.17268 1.82434 1.23380 0.98410 0.75685 1.00327 1.18276 0.90640 0.91247 0.93778 1.21608 1.00797 0.98324 0.96747 1.21606 1.00804 0.98302 0.96764 1.21178 0.92986 0.90595 1.52305 0.92860 1.25567 0.95014 1.02519 0.94272 1.69961 1.01814 1.32111 1.50067 0.85577 0.78179 0.79814 0.78160 1.20216 1.20728 1.19583 0.86486 0.88205 0.88217 0.67458 0.92672 0.92664 0.95704 0.91702 0.95959 0.95949 0.91689 0.95713 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 9.13 71.24 0.65 -0.53 16 2 C 0.07 1.64 7.44 25.21 0.19 1.83 16 3 O -0.19 -3.49 10.72 0.50 0.01 -3.49 16 4 C 0.20 3.57 13.19 130.53 1.72 5.29 16 5 N -0.50 -14.95 11.36 -305.21 -3.47 -18.42 16 6 C -0.10 -3.24 7.04 40.38 0.28 -2.95 16 7 C 0.54 21.16 7.96 70.20 0.56 21.72 16 8 O -0.52 -20.80 15.40 19.74 0.30 -20.50 16 9 O -0.34 -15.27 8.89 -56.86 -0.51 -15.78 16 10 C 0.10 4.47 4.27 71.98 0.31 4.78 16 11 C 0.06 3.15 0.58 -52.93 -0.03 3.12 16 12 C -0.12 -6.00 8.11 71.98 0.58 -5.42 16 13 C -0.12 -6.00 8.11 71.98 0.58 -5.42 16 14 C -0.53 -29.25 8.01 25.60 0.21 -29.05 16 15 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 16 C 0.03 1.42 5.15 84.65 0.44 1.86 16 17 N -0.90 -50.32 9.35 21.45 0.20 -50.12 16 18 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 24 H 0.10 1.74 8.07 -2.39 -0.02 1.72 16 25 H 0.31 1.36 8.06 -2.91 -0.02 1.34 16 26 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.05 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.02 1.19 7.68 -2.39 -0.02 1.17 16 29 H 0.06 3.56 6.07 -2.38 -0.01 3.55 16 30 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 3.57 6.07 -2.39 -0.01 3.56 16 33 H 0.02 1.19 7.68 -2.39 -0.02 1.17 16 34 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -69.04 294.03 5.15 -63.88 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.10 Total: 4.03 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.49 Total: -4.77 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -3.27 Total: -68.54 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.20 Total: -39.77 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -69.04 5.15 -63.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184765809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.057 kcal (2) G-P(sol) polarization free energy of solvation -69.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds