Wall clock time and date at job start Mon Mar 30 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34873 * 117.00289 * 89.99586 * 13 3 2 15 15 O 1.21617 * 120.00108 * 0.02562 * 14 13 3 16 16 C 1.46542 * 120.00195 * 179.97438 * 14 13 3 17 17 O 1.35361 * 126.65065 * 0.02660 * 16 14 13 18 18 C 1.33650 * 107.68539 * 179.97438 * 17 16 14 19 19 C 1.50700 * 125.41640 * 180.02562 * 18 17 16 20 20 N 1.30647 * 109.16871 * 359.97438 * 18 17 16 21 21 C 1.33645 * 109.00627 * 359.76794 * 20 18 17 22 22 C 1.50704 * 126.27894 * 180.23627 * 21 20 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47284 * 0.02562 * 19 18 17 30 30 H 1.08999 * 109.47372 * 120.02473 * 19 18 17 31 31 H 1.09003 * 109.46588 * 240.02462 * 19 18 17 32 32 H 1.08997 * 109.47221 * 270.15669 * 22 21 20 33 33 H 1.09001 * 109.47066 * 30.16197 * 22 21 20 34 34 H 1.08996 * 109.46882 * 150.15673 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4669 2.7285 -1.2559 15 8 -0.2291 2.7409 -0.2587 16 6 0.0144 3.4065 -2.4737 17 8 0.6764 3.4779 -3.6523 18 6 -0.0787 4.1832 -4.5000 19 6 0.2793 4.5049 -5.9281 20 7 -1.1771 4.5483 -3.8942 21 6 -1.1587 4.0825 -2.6416 22 6 -2.2348 4.2726 -1.6038 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8293 -0.0605 2.9501 29 1 1.2514 4.0728 -6.1651 30 1 -0.4757 4.0883 -6.5947 31 1 0.3212 5.5864 -6.0572 32 1 -2.0392 5.1849 -1.0404 33 1 -3.2044 4.3501 -2.0956 34 1 -2.2391 3.4200 -0.9246 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188031849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:38 Heat of formation + Delta-G solvation = -77.154923 kcal Electronic energy + Delta-G solvation = -18893.666312 eV Core-core repulsion = 15793.321468 eV Total energy + Delta-G solvation = -3100.344844 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.36522 -39.54172 -36.12376 -35.13170 -33.55713 -32.77296 -31.40313 -29.38456 -27.98439 -26.94408 -23.49253 -22.40311 -21.73322 -20.66637 -19.72878 -17.82406 -17.03113 -16.65572 -16.04385 -15.42953 -15.18780 -14.61282 -14.26004 -13.41683 -13.22770 -13.15012 -13.04645 -12.85330 -12.76871 -12.22660 -12.11175 -11.56616 -11.43337 -11.26208 -10.99717 -10.94232 -10.83967 -10.69981 -10.33920 -9.96782 -9.78952 -9.47411 -8.89972 -8.74495 -8.49435 -6.22545 -4.29867 0.87849 2.39434 2.44915 3.24508 3.27505 3.28686 3.30684 3.52865 3.90868 4.30580 4.70733 5.02708 5.09559 5.13458 5.15376 5.48063 5.62466 5.71758 5.76346 5.91940 5.98687 6.17788 6.24736 6.32925 6.40005 6.77970 6.87906 7.09485 7.11058 7.53641 7.58316 7.66305 7.82657 8.08426 8.45923 8.79732 9.35105 10.84267 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.005847 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.856931 B = 4787.878523 C = 5394.849954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.221 3.779 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 O -0.342 6.342 14 C 0.545 3.455 15 O -0.487 6.487 16 C -0.086 4.086 17 O -0.172 6.172 18 C 0.212 3.788 19 C -0.059 4.059 20 N -0.492 5.492 21 C 0.077 3.923 22 C -0.080 4.080 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.112 0.888 27 H 0.043 0.957 28 H 0.268 0.732 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 5.623 -11.234 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.740 3.260 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.258 6.258 14 C 0.388 3.612 15 O -0.378 6.378 16 C -0.139 4.139 17 O -0.058 6.058 18 C 0.007 3.993 19 C -0.116 4.116 20 N -0.224 5.224 21 C -0.046 4.046 22 C -0.137 4.137 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.130 0.870 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.412 5.809 -11.032 14.504 hybrid contribution 1.474 -0.480 0.471 1.620 sum -5.938 5.329 -10.561 13.236 Atomic orbital electron populations 1.21876 0.98322 0.99272 1.00688 1.22043 0.92699 0.99131 1.03591 1.20834 0.95315 0.88871 0.78043 0.93110 1.20984 0.89434 1.39328 1.06424 0.91305 1.24869 0.99342 0.94619 0.94953 1.69872 1.35547 1.37628 1.09436 0.86313 0.83688 0.78533 0.77508 1.19964 1.20950 1.19902 1.86662 1.32573 1.61925 1.44603 1.18867 0.81733 0.76604 0.83992 1.90865 1.55631 1.59091 1.32191 1.22153 0.95399 1.10195 0.86154 1.84565 1.44416 1.56955 1.19827 1.26552 0.85953 0.91332 0.95471 1.20343 1.04062 1.04007 0.83216 1.70303 1.21680 1.24407 1.05974 1.22043 0.94891 0.94884 0.92813 1.20400 0.94067 1.04517 0.94738 0.92594 0.94566 0.95140 0.87047 0.93839 0.92233 0.88885 0.88176 0.88158 0.89919 0.90515 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.56 37.16 0.32 -2.81 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.89 2.25 -27.88 -0.06 5.82 16 4 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 5 C -0.52 -14.66 8.90 -34.44 -0.31 -14.97 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.71 11.29 55.43 0.63 -24.09 16 9 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 O -0.34 -8.46 9.82 -41.96 -0.41 -8.87 16 14 C 0.54 12.00 6.38 34.08 0.22 12.22 16 15 O -0.49 -10.94 11.99 -19.36 -0.23 -11.17 16 16 C -0.09 -1.63 7.25 -36.88 -0.27 -1.90 16 17 O -0.17 -3.02 10.79 4.39 0.05 -2.97 16 18 C 0.21 2.96 8.32 -12.78 -0.11 2.86 16 19 C -0.06 -0.46 10.51 36.01 0.38 -0.08 16 20 N -0.49 -7.64 11.26 -7.05 -0.08 -7.72 16 21 C 0.08 1.29 7.16 -82.45 -0.59 0.70 16 22 C -0.08 -1.12 9.87 36.01 0.36 -0.76 16 23 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 26 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 27 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.46 6.48 -51.93 -0.34 1.12 16 LS Contribution 292.54 15.07 4.41 4.41 Total: -1.00 -30.88 292.54 -5.21 -36.08 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.24 Total: -0.80 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.30 Total: -0.78 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.55 Total: -31.81 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.60 Total: -23.01 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.88 -5.21 -36.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188031849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.070 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds