Wall clock time and date at job start Mon Mar 30 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34873 * 117.00289 * 89.99586 * 13 3 2 15 15 O 1.21617 * 120.00108 * 0.02562 * 14 13 3 16 16 C 1.46542 * 120.00195 * 179.97438 * 14 13 3 17 17 O 1.35361 * 126.65065 * 0.02660 * 16 14 13 18 18 C 1.33650 * 107.68539 * 179.97438 * 17 16 14 19 19 C 1.50700 * 125.41640 * 180.02562 * 18 17 16 20 20 N 1.30647 * 109.16871 * 359.97438 * 18 17 16 21 21 C 1.33645 * 109.00627 * 359.76794 * 20 18 17 22 22 C 1.50704 * 126.27894 * 180.23627 * 21 20 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47284 * 0.02562 * 19 18 17 30 30 H 1.08999 * 109.47372 * 120.02473 * 19 18 17 31 31 H 1.09003 * 109.46588 * 240.02462 * 19 18 17 32 32 H 1.08997 * 109.47221 * 270.15669 * 22 21 20 33 33 H 1.09001 * 109.47066 * 30.16197 * 22 21 20 34 34 H 1.08996 * 109.46882 * 150.15673 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4669 2.7285 -1.2559 15 8 -0.2291 2.7409 -0.2587 16 6 0.0144 3.4065 -2.4737 17 8 0.6764 3.4779 -3.6523 18 6 -0.0787 4.1832 -4.5000 19 6 0.2793 4.5049 -5.9281 20 7 -1.1771 4.5483 -3.8942 21 6 -1.1587 4.0825 -2.6416 22 6 -2.2348 4.2726 -1.6038 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8293 -0.0605 2.9501 29 1 1.2514 4.0728 -6.1651 30 1 -0.4757 4.0883 -6.5947 31 1 0.3212 5.5864 -6.0572 32 1 -2.0392 5.1849 -1.0404 33 1 -3.2044 4.3501 -2.0956 34 1 -2.2391 3.4200 -0.9246 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188031849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:37 Heat of formation + Delta-G solvation = -98.020903 kcal Electronic energy + Delta-G solvation = -18894.571129 eV Core-core repulsion = 15793.321468 eV Total energy + Delta-G solvation = -3101.249661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.62875 -41.32350 -37.90563 -36.46708 -35.54137 -33.90317 -33.34985 -30.34175 -29.68967 -28.59249 -25.39747 -23.93049 -22.94135 -22.19234 -21.54682 -19.52699 -18.67233 -18.30140 -17.81048 -16.94253 -16.79809 -16.45694 -15.37644 -15.01614 -14.80738 -14.43298 -14.26374 -14.07107 -13.83815 -13.51970 -13.48422 -13.36612 -13.21628 -13.16826 -12.85439 -12.61077 -12.17574 -12.15370 -12.10380 -11.80901 -11.58139 -11.45515 -10.90698 -10.57114 -10.03969 -8.30336 -6.47555 -0.48784 1.13412 1.15728 1.41117 1.44114 1.52567 1.69146 2.01050 2.39724 2.79671 2.99285 3.47547 3.74043 4.18398 4.27186 4.33961 4.35490 4.50572 4.58159 4.61367 4.63848 4.70184 4.76840 4.83466 5.03298 5.06240 5.15906 5.22726 5.29663 5.45912 5.60986 5.83510 6.02428 6.32335 6.53017 6.77967 7.22629 8.76353 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.005847 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.856931 B = 4787.878523 C = 5394.849954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.017 0.983 5 C -0.556 4.556 6 H 0.062 0.938 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.981 3.019 10 H -0.270 1.270 11 H -0.273 1.273 12 H -0.265 1.265 13 O -0.358 6.358 14 C 0.542 3.458 15 O -0.502 6.502 16 C -0.135 4.135 17 O -0.192 6.192 18 C 0.236 3.764 19 C -0.061 4.061 20 N -0.508 5.508 21 C 0.100 3.900 22 C -0.081 4.081 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.273 0.727 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 6.234 -13.027 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.035 0.965 5 C -0.593 4.593 6 H 0.080 0.920 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.804 3.196 10 H -0.195 1.195 11 H -0.198 1.198 12 H -0.190 1.190 13 O -0.274 6.274 14 C 0.388 3.612 15 O -0.394 6.394 16 C -0.188 4.188 17 O -0.079 6.079 18 C 0.032 3.968 19 C -0.118 4.118 20 N -0.239 5.239 21 C -0.024 4.024 22 C -0.138 4.138 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.514 6.430 -12.836 16.204 hybrid contribution 1.404 -0.563 0.882 1.751 sum -6.110 5.866 -11.953 14.650 Atomic orbital electron populations 1.21731 0.96054 1.00922 1.00147 1.21891 0.94696 0.97735 1.02492 1.20574 0.94830 0.89496 0.77878 0.96495 1.21253 0.90321 1.40616 1.07147 0.92010 1.25752 1.04238 0.93640 0.94164 1.69982 1.37526 1.37512 1.09740 0.85270 0.77593 0.78766 0.78013 1.19509 1.19819 1.19013 1.86630 1.34444 1.62829 1.43537 1.19226 0.80653 0.76160 0.85205 1.90834 1.55632 1.59729 1.33189 1.21676 0.97086 1.13710 0.86302 1.84554 1.45304 1.58208 1.19855 1.28006 0.84461 0.87681 0.96615 1.20831 1.05700 1.05868 0.79386 1.70431 1.22592 1.25518 1.05394 1.22498 0.94001 0.92281 0.93585 1.20514 0.94603 1.04416 0.94260 0.93698 0.91696 0.95056 0.88943 0.93859 0.91800 0.87309 0.85531 0.85616 0.88636 0.87791 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.56 71.98 0.62 -5.15 16 2 C -0.13 -6.63 5.49 30.59 0.17 -6.46 16 3 C 0.22 12.49 2.25 29.85 0.07 12.56 16 4 H 0.02 1.05 7.16 -2.38 -0.02 1.03 16 5 C -0.56 -32.11 8.90 25.60 0.23 -31.88 16 6 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.91 -51.61 11.29 21.45 0.24 -51.37 16 9 Si 0.98 42.95 29.54 68.60 2.03 44.98 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 13 O -0.36 -18.50 9.82 -56.92 -0.56 -19.06 16 14 C 0.54 24.83 6.38 69.99 0.45 25.27 16 15 O -0.50 -23.52 11.99 19.45 0.23 -23.29 16 16 C -0.14 -5.22 7.25 24.02 0.17 -5.04 16 17 O -0.19 -6.65 10.79 -7.13 -0.08 -6.73 16 18 C 0.24 6.10 8.32 88.28 0.73 6.83 16 19 C -0.06 -0.72 10.51 71.24 0.75 0.02 16 20 N -0.51 -14.73 11.26 -291.00 -3.28 -18.01 16 21 C 0.10 3.27 7.16 41.86 0.30 3.57 16 22 C -0.08 -2.17 9.87 71.24 0.70 -1.47 16 23 H 0.04 2.04 7.79 -2.39 -0.02 2.02 16 24 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 25 H 0.03 1.34 6.06 -2.38 -0.01 1.32 16 26 H 0.09 5.06 5.95 -2.39 -0.01 5.05 16 27 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.50 6.48 -2.39 -0.02 2.49 16 Total: -1.00 -68.95 292.54 4.34 -64.61 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.11 Total: 8.92 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 4.63 Total: -0.06 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -3.03 Total: -69.38 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.40 Total: -49.08 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.95 4.34 -64.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188031849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.408 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds