Wall clock time and date at job start Mon Mar 30 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47313 * 2 1 4 4 C 1.50695 * 109.47274 * 240.00297 * 2 1 3 5 5 C 1.38236 * 120.00120 * 106.37982 * 4 2 1 6 6 C 1.38240 * 119.99919 * 180.02562 * 5 4 2 7 7 C 1.38237 * 119.99903 * 359.97067 * 6 5 4 8 8 C 1.38236 * 120.00178 * 0.02933 * 7 6 5 9 9 C 1.38236 * 119.99950 * 359.97438 * 8 7 6 10 10 N 1.46501 * 109.47117 * 120.00090 * 2 1 3 11 11 C 1.36934 * 119.99897 * 4.67917 * 10 2 1 12 12 H 1.07998 * 120.00029 * 8.95785 * 11 10 2 13 13 C 1.38812 * 119.99940 * 188.95367 * 11 10 2 14 14 N 1.31625 * 120.00117 * 20.89418 * 13 11 10 15 15 Si 1.86797 * 120.00152 * 200.90219 * 13 11 10 16 16 H 1.48501 * 109.47217 * 59.99694 * 15 13 11 17 17 H 1.48502 * 109.47481 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46919 * 299.99963 * 15 13 11 19 19 C 1.46507 * 119.99938 * 184.67931 * 10 2 1 20 20 C 1.53006 * 109.47048 * 84.61733 * 19 10 2 21 21 Cl 1.80299 * 109.47233 * 174.65387 * 20 19 10 22 22 H 1.08996 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47066 * 300.00245 * 1 2 3 24 24 H 1.09002 * 109.47037 * 59.99712 * 1 2 3 25 25 H 1.07991 * 120.00045 * 359.97438 * 5 4 2 26 26 H 1.07991 * 120.00002 * 179.70027 * 6 5 4 27 27 H 1.08003 * 120.00179 * 179.97438 * 7 6 5 28 28 H 1.07995 * 120.00016 * 180.02562 * 8 7 6 29 29 H 1.08005 * 119.99944 * 180.02562 * 9 8 7 30 30 H 0.96995 * 120.00245 * 179.97438 * 14 13 11 31 31 H 1.08993 * 109.47005 * 204.61348 * 19 10 2 32 32 H 1.08999 * 109.46952 * 324.62099 * 19 10 2 33 33 H 1.09003 * 109.46981 * 294.65785 * 20 19 10 34 34 H 1.09004 * 109.46568 * 54.65192 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 6 2.5810 0.0149 -2.2716 6 6 3.0414 -0.6367 -3.4005 7 6 2.9535 -2.0135 -3.4880 8 6 2.4048 -2.7387 -2.4469 9 6 1.9444 -2.0871 -1.3180 10 7 2.0183 -0.6906 1.1962 11 6 1.1322 -1.2942 2.0480 12 1 0.0932 -1.3881 1.7687 13 6 1.5694 -1.7854 3.2705 14 7 2.6872 -1.3343 3.7993 15 14 0.5715 -3.0866 4.1651 16 1 0.4582 -4.2968 3.3120 17 1 1.2484 -3.4409 5.4385 18 1 -0.7851 -2.5570 4.4557 19 6 3.4547 -0.7356 1.4810 20 6 3.8688 0.5402 2.2173 21 17 5.5999 0.4170 2.7062 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.6493 1.0904 -2.2034 26 1 3.4656 -0.0698 -4.2159 27 1 3.3128 -2.5226 -4.3702 28 1 2.3366 -3.8144 -2.5151 29 1 1.5161 -2.6537 -0.5044 30 1 2.9925 -1.6773 4.6537 31 1 3.6746 -1.6023 2.1042 32 1 4.0085 -0.8109 0.5451 33 1 3.7375 1.3987 1.5586 34 1 3.2485 0.6649 3.1048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198723793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:52 Heat of formation + Delta-G solvation = 38.007926 kcal Electronic energy + Delta-G solvation = -16940.024212 eV Core-core repulsion = 14285.382369 eV Total energy + Delta-G solvation = -2654.641843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.99809 -36.42620 -34.69936 -32.73188 -30.50563 -30.40245 -29.32392 -27.34984 -24.63043 -22.50652 -21.97907 -21.24392 -19.49317 -16.66309 -16.08308 -15.57395 -14.88705 -14.35993 -13.83281 -13.55858 -13.35555 -13.00078 -12.87262 -12.63978 -12.21875 -11.81163 -11.60776 -11.26746 -11.03425 -10.88141 -10.82173 -10.47851 -10.37938 -10.15324 -9.92167 -9.73114 -9.46667 -9.10259 -8.48063 -8.45469 -8.17280 -7.02022 -5.82549 -3.18129 1.83187 1.88952 3.35776 3.43073 3.44682 3.54764 4.25425 4.47584 5.19286 5.28267 5.36369 5.43692 5.44792 5.65798 5.93409 5.99050 6.08304 6.12100 6.17216 6.34862 6.43819 6.54326 6.56262 6.67760 6.73502 6.85528 6.91218 7.01020 7.28543 7.39448 7.50910 7.64326 7.78199 8.27168 9.13664 9.75904 10.20100 11.21252 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.009156 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.521002 B = 3057.272156 C = 4096.123327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.204 3.796 3 H 0.038 0.962 4 C -0.080 4.080 5 C -0.123 4.123 6 C -0.130 4.130 7 C -0.136 4.136 8 C -0.129 4.129 9 C -0.087 4.087 10 N -0.584 5.584 11 C -0.259 4.259 12 H 0.084 0.916 13 C 0.000 4.000 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.286 1.286 19 C 0.165 3.835 20 C -0.007 4.007 21 Cl -0.237 7.237 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.257 0.743 31 H 0.107 0.893 32 H 0.014 0.986 33 H 0.041 0.959 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 1.555 -9.615 9.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.097 3.903 3 H 0.055 0.945 4 C -0.083 4.083 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.148 4.148 9 C -0.106 4.106 10 N -0.306 5.306 11 C -0.388 4.388 12 H 0.102 0.898 13 C -0.198 4.198 14 N -0.544 5.544 15 Si 0.730 3.270 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.212 1.212 19 C 0.040 3.960 20 C -0.073 4.073 21 Cl -0.212 7.212 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.148 0.852 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.323 1.496 -9.392 9.516 hybrid contribution -0.276 -0.581 0.523 0.829 sum -0.598 0.915 -8.869 8.936 Atomic orbital electron populations 1.21854 0.94804 1.02115 1.00436 1.19313 0.93399 0.93095 0.84535 0.94461 1.20975 0.96594 0.94567 0.96139 1.21036 0.99752 0.99440 0.93963 1.20982 1.01211 0.94587 0.97994 1.20985 1.01356 0.94282 0.98765 1.21144 0.99847 0.99402 0.94362 1.21149 0.97954 0.94480 0.96972 1.44208 1.02427 1.61897 1.22075 1.19370 0.92292 1.30359 0.96744 0.89833 1.24761 0.97750 1.00668 0.96575 1.70004 1.23571 1.42579 1.18213 0.86405 0.79213 0.82636 0.78785 1.21287 1.21721 1.21249 1.21129 0.82201 0.97600 0.95111 1.25545 0.78264 1.00513 1.02930 1.98613 1.29568 1.99022 1.93988 0.92030 0.91838 0.93927 0.86855 0.87025 0.87120 0.86881 0.85248 0.93250 0.87542 0.96774 0.94041 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.80 37.16 0.29 -2.06 16 2 C 0.20 3.90 3.23 -69.09 -0.22 3.67 16 3 H 0.04 0.71 7.94 -51.92 -0.41 0.30 16 4 C -0.08 -1.43 4.11 -104.62 -0.43 -1.86 16 5 C -0.12 -1.95 9.67 -39.58 -0.38 -2.34 16 6 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 7 C -0.14 -1.94 10.05 -39.58 -0.40 -2.33 16 8 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 9 C -0.09 -1.56 9.21 -39.58 -0.36 -1.93 16 10 N -0.58 -13.08 2.13 -166.97 -0.36 -13.43 16 11 C -0.26 -6.30 8.95 -15.06 -0.13 -6.43 16 12 H 0.08 1.97 5.68 -52.49 -0.30 1.68 16 13 C 0.00 0.00 5.01 -17.43 -0.09 -0.09 16 14 N -0.90 -23.46 8.42 55.49 0.47 -22.99 16 15 Si 0.90 20.61 29.60 -169.99 -5.03 15.57 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.17 3.78 4.92 -4.03 -0.02 3.76 16 20 C -0.01 -0.16 6.34 37.16 0.24 0.07 16 21 Cl -0.24 -4.94 29.15 -51.86 -1.51 -6.45 16 22 H 0.06 1.10 7.01 -51.93 -0.36 0.74 16 23 H 0.06 1.15 7.79 -51.93 -0.40 0.74 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.11 1.61 7.99 -52.49 -0.42 1.19 16 26 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.13 2.53 7.92 -52.48 -0.42 2.11 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.11 2.76 5.78 -51.93 -0.30 2.46 16 32 H 0.01 0.32 7.48 -51.93 -0.39 -0.07 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.12 2.90 6.54 -51.93 -0.34 2.56 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -25.34 292.89 -8.92 -34.26 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.59 Total: 2.83 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.31 Total: -14.21 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.11 Total: -36.43 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 17 Polarization: -4.94 SS G_CDS: -1.51 Total: -6.45 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -25.34 -8.92 -34.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198723793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.270 kcal (2) G-P(sol) polarization free energy of solvation -25.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds