Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46691 * 299.99226 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99608 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.35961 * 116.99861 * 179.97438 * 12 11 10 14 14 C 1.38664 * 120.06108 * 359.72751 * 13 12 11 15 15 C 1.38183 * 119.96304 * 179.74423 * 14 13 12 16 16 C 1.38257 * 120.09865 * 0.53118 * 15 14 13 17 17 C 1.50697 * 119.93748 * 179.76610 * 16 15 14 18 18 N 1.46906 * 109.47357 * 269.97933 * 17 16 15 19 19 C 1.38253 * 120.12706 * 359.74477 * 16 15 14 20 20 C 1.38331 * 120.02924 * 359.97438 * 19 16 15 21 21 F 1.35101 * 120.05235 * 179.97438 * 20 19 16 22 22 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 24 24 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 25 25 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 26 26 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 27 27 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 28 28 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 29 29 H 1.07995 * 120.01559 * 0.02562 * 14 13 12 30 30 H 1.08000 * 119.94790 * 180.27506 * 15 14 13 31 31 H 1.09000 * 109.47015 * 29.97810 * 17 16 15 32 32 H 1.08999 * 109.47133 * 149.97893 * 17 16 15 33 33 H 1.00897 * 110.99422 * 56.04076 * 18 17 16 34 34 H 1.00894 * 111.00028 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.98812 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 8 2.4087 -6.0733 0.0006 13 6 1.8890 -7.3297 0.0016 14 6 0.5145 -7.5128 0.0088 15 6 -0.0116 -8.7905 0.0045 16 6 0.8305 -9.8870 0.0040 17 6 0.2529 -11.2789 0.0046 18 7 0.0667 -11.7313 1.3898 19 6 2.2016 -9.7090 0.0026 20 6 2.7339 -8.4323 0.0010 21 9 4.0736 -8.2578 0.0001 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6045 -0.8894 27 1 0.8537 -5.0446 0.8914 28 1 0.8531 -5.0451 -0.8886 29 1 -0.1445 -6.6572 0.0133 30 1 -1.0822 -8.9328 0.0056 31 1 -0.7089 -11.2734 -0.5082 32 1 0.9351 -11.9556 -0.5099 33 1 -0.5105 -11.0849 1.9067 34 1 -0.3203 -12.6627 1.4171 35 1 2.8573 -10.5672 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232424524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = -78.714305 kcal Electronic energy + Delta-G solvation = -17584.932903 eV Core-core repulsion = 14496.893229 eV Total energy + Delta-G solvation = -3088.039674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.68709 -40.02114 -37.98145 -34.73415 -33.94716 -31.78446 -30.79475 -29.76473 -27.10273 -24.91607 -23.83317 -22.44825 -21.25977 -20.26403 -18.16137 -17.05236 -16.79073 -16.27371 -16.16188 -15.90933 -15.19022 -14.94525 -14.71500 -14.44450 -14.00579 -13.77110 -13.32057 -13.24086 -12.40891 -12.31645 -11.97856 -11.92052 -11.58627 -11.26874 -11.06885 -10.69719 -10.59425 -10.52696 -9.80515 -9.56796 -9.17734 -9.09204 -8.99919 -8.41417 -8.10264 -6.06495 -4.08913 1.06161 1.15308 3.28376 3.28964 3.36662 3.42027 3.43390 4.18488 4.37888 4.42708 4.52439 4.65986 4.90476 5.02044 5.20984 5.29715 5.29954 5.44814 5.46622 5.54226 5.84878 5.89225 5.97318 6.11529 6.30977 6.48387 6.51155 6.70622 6.75764 6.94700 7.06071 7.48693 7.57183 7.67425 7.92179 8.33923 8.97481 9.55686 11.05069 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.044334 B = 0.003415 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.424871 B = 8197.749450 C = 8721.527604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.057 3.943 12 O -0.308 6.308 13 C 0.112 3.888 14 C -0.185 4.185 15 C -0.082 4.082 16 C -0.110 4.110 17 C 0.108 3.892 18 N -0.847 5.847 19 C -0.095 4.095 20 C 0.060 3.940 21 F -0.133 7.133 22 H 0.261 0.739 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.142 0.858 30 H 0.127 0.873 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.343 0.657 34 H 0.342 0.658 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 -22.031 -0.045 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.017 4.017 12 O -0.221 6.221 13 C 0.064 3.936 14 C -0.203 4.203 15 C -0.101 4.101 16 C -0.110 4.110 17 C -0.022 4.022 18 N -0.378 5.378 19 C -0.115 4.115 20 C 0.040 3.960 21 F -0.112 7.112 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.947 -21.755 0.009 21.776 hybrid contribution -0.659 1.045 -0.241 1.259 sum -1.607 -20.710 -0.232 20.774 Atomic orbital electron populations 1.69968 1.06085 1.26662 1.50780 1.25027 0.94890 0.99391 0.95162 0.86488 0.80163 0.83496 0.77609 1.19633 1.20951 1.20949 1.21225 0.93229 0.90678 1.50744 0.92359 1.19051 0.93799 0.90835 0.97533 1.21739 0.99938 0.90797 1.02167 1.23298 0.92238 0.85141 1.01003 1.86209 1.37137 1.11406 1.87323 1.19174 0.91974 0.85390 0.97038 1.21240 0.93224 0.99009 1.06857 1.20858 0.99669 0.91313 0.98284 1.19396 0.92494 0.94996 1.04154 1.20595 0.99047 0.92520 0.90013 1.58718 1.58675 1.07103 1.13272 1.20775 0.95575 0.94702 1.00425 1.17000 0.77107 0.92012 1.09860 1.91497 1.29210 1.96148 1.94328 0.92960 0.96290 0.96274 0.92072 0.92075 0.92081 0.92101 0.84076 0.85533 0.94440 0.90140 0.84393 0.84503 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.11 -2.28 5.52 -26.73 -0.15 -2.43 16 11 C 0.06 1.01 4.74 37.16 0.18 1.18 16 12 O -0.31 -5.53 10.00 -19.62 -0.20 -5.73 16 13 C 0.11 1.74 6.69 -39.18 -0.26 1.48 16 14 C -0.18 -2.38 9.04 -39.44 -0.36 -2.74 16 15 C -0.08 -0.86 9.69 -39.59 -0.38 -1.25 16 16 C -0.11 -1.12 5.39 -104.61 -0.56 -1.68 16 17 C 0.11 0.81 6.91 -4.97 -0.03 0.78 16 18 N -0.85 -6.03 9.61 -11.41 -0.11 -6.14 16 19 C -0.10 -1.12 9.67 -39.54 -0.38 -1.50 16 20 C 0.06 0.88 7.31 -39.30 -0.29 0.60 16 21 F -0.13 -2.15 17.11 2.25 0.04 -2.12 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.06 1.01 7.65 -51.93 -0.40 0.61 16 28 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 29 H 0.14 1.71 6.30 -52.49 -0.33 1.38 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.08 0.55 8.08 -51.93 -0.42 0.14 16 33 H 0.34 2.29 8.98 -39.29 -0.35 1.94 16 34 H 0.34 1.69 9.08 -39.29 -0.36 1.33 16 35 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -31.11 305.98 -7.49 -38.59 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.75 Total: -1.38 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.79 Total: -18.56 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.63 Total: -31.99 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.20 Total: -5.73 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.11 -7.49 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232424524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.121 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds