Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46691 * 299.99226 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99608 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.35961 * 116.99861 * 179.97438 * 12 11 10 14 14 C 1.38664 * 120.06108 * 359.72751 * 13 12 11 15 15 C 1.38183 * 119.96304 * 179.74423 * 14 13 12 16 16 C 1.38257 * 120.09865 * 0.53118 * 15 14 13 17 17 C 1.50697 * 119.93748 * 179.76610 * 16 15 14 18 18 N 1.46906 * 109.47357 * 269.97933 * 17 16 15 19 19 C 1.38253 * 120.12706 * 359.74477 * 16 15 14 20 20 C 1.38331 * 120.02924 * 359.97438 * 19 16 15 21 21 F 1.35101 * 120.05235 * 179.97438 * 20 19 16 22 22 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 24 24 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 25 25 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 26 26 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 27 27 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 28 28 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 29 29 H 1.07995 * 120.01559 * 0.02562 * 14 13 12 30 30 H 1.08000 * 119.94790 * 180.27506 * 15 14 13 31 31 H 1.09000 * 109.47015 * 29.97810 * 17 16 15 32 32 H 1.08999 * 109.47133 * 149.97893 * 17 16 15 33 33 H 1.00897 * 110.99422 * 56.04076 * 18 17 16 34 34 H 1.00894 * 111.00028 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.98812 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 8 2.4087 -6.0733 0.0006 13 6 1.8890 -7.3297 0.0016 14 6 0.5145 -7.5128 0.0088 15 6 -0.0116 -8.7905 0.0045 16 6 0.8305 -9.8870 0.0040 17 6 0.2529 -11.2789 0.0046 18 7 0.0667 -11.7313 1.3898 19 6 2.2016 -9.7090 0.0026 20 6 2.7339 -8.4323 0.0010 21 9 4.0736 -8.2578 0.0001 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6045 -0.8894 27 1 0.8537 -5.0446 0.8914 28 1 0.8531 -5.0451 -0.8886 29 1 -0.1445 -6.6572 0.0133 30 1 -1.0822 -8.9328 0.0056 31 1 -0.7089 -11.2734 -0.5082 32 1 0.9351 -11.9556 -0.5099 33 1 -0.5105 -11.0849 1.9067 34 1 -0.3203 -12.6627 1.4171 35 1 2.8573 -10.5672 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232424524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = -98.866579 kcal Electronic energy + Delta-G solvation = -17585.806771 eV Core-core repulsion = 14496.893229 eV Total energy + Delta-G solvation = -3088.913542 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.84564 -41.11835 -39.05547 -36.11368 -35.23353 -33.68075 -31.75052 -30.77555 -28.84251 -25.98121 -25.18229 -23.78631 -22.26736 -21.91491 -19.36177 -18.56835 -17.83288 -17.79937 -17.45691 -16.68837 -16.51988 -16.43402 -15.83616 -15.50938 -15.07638 -14.89511 -14.66126 -14.40928 -14.13606 -13.66352 -13.27279 -13.13324 -12.82272 -12.80343 -12.50107 -12.29128 -12.19075 -11.96215 -11.56731 -11.51802 -11.25459 -10.58760 -9.96441 -9.61311 -9.15678 -8.24022 -6.34525 0.09655 0.17713 1.39601 1.40111 1.53510 2.05121 2.40796 2.49080 3.09915 3.18283 3.64416 3.70954 3.90748 3.99882 4.03779 4.16593 4.20765 4.39378 4.44098 4.50744 4.72679 4.78046 4.86792 4.93709 5.03459 5.07753 5.17759 5.43846 5.45304 5.63250 5.67724 5.78556 6.17176 6.24035 6.30813 6.64362 6.80419 7.34680 8.88098 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.044334 B = 0.003415 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.424871 B = 8197.749450 C = 8721.527604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.098 4.098 11 C 0.070 3.930 12 O -0.332 6.332 13 C 0.078 3.922 14 C -0.188 4.188 15 C -0.073 4.073 16 C -0.098 4.098 17 C 0.110 3.890 18 N -0.858 5.858 19 C -0.093 4.093 20 C 0.034 3.966 21 F -0.150 7.150 22 H 0.265 0.735 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.346 0.654 34 H 0.356 0.644 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 -23.421 -0.075 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.136 4.136 11 C -0.004 4.004 12 O -0.246 6.246 13 C 0.032 3.968 14 C -0.207 4.207 15 C -0.092 4.092 16 C -0.099 4.099 17 C -0.020 4.020 18 N -0.390 5.390 19 C -0.112 4.112 20 C 0.015 3.985 21 F -0.129 7.129 22 H 0.074 0.926 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.164 0.836 30 H 0.178 0.822 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.636 -23.177 -0.019 23.235 hybrid contribution -0.508 1.329 -0.224 1.440 sum -2.144 -21.848 -0.244 21.955 Atomic orbital electron populations 1.70075 1.07611 1.27886 1.51387 1.25934 0.95827 1.03228 0.94552 0.85393 0.78955 0.78738 0.77940 1.18930 1.20155 1.20172 1.21650 0.93551 0.92250 1.50986 0.92415 1.18900 0.94047 0.91894 0.95825 1.21453 0.98952 0.91493 1.01705 1.22976 0.91582 0.83913 1.01968 1.86112 1.37598 1.12463 1.88440 1.19466 0.93373 0.84339 0.99664 1.21412 0.92115 1.00485 1.06648 1.21242 1.01438 0.90179 0.96330 1.19811 0.91803 0.96644 1.01638 1.20635 1.00075 0.90648 0.90625 1.58681 1.59269 1.08076 1.12991 1.21052 0.96730 0.93909 0.99532 1.17399 0.76507 0.93080 1.11547 1.91444 1.30418 1.96335 1.94673 0.92579 0.97903 0.97910 0.92527 0.92485 0.91153 0.91114 0.83609 0.82211 0.92404 0.89286 0.84100 0.82969 0.82584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -31.31 9.11 25.60 0.23 -31.07 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.10 -4.23 5.52 30.60 0.17 -4.06 16 11 C 0.07 2.49 4.74 71.98 0.34 2.83 16 12 O -0.33 -12.21 10.00 -93.11 -0.93 -13.14 16 13 C 0.08 2.43 6.69 22.53 0.15 2.58 16 14 C -0.19 -4.63 9.04 22.36 0.20 -4.42 16 15 C -0.07 -1.33 9.69 22.26 0.22 -1.12 16 16 C -0.10 -1.73 5.39 -19.86 -0.11 -1.84 16 17 C 0.11 1.24 6.91 85.55 0.59 1.83 16 18 N -0.86 -9.44 9.61 -190.00 -1.83 -11.27 16 19 C -0.09 -2.05 9.67 22.30 0.22 -1.83 16 20 C 0.03 1.01 7.31 22.45 0.16 1.18 16 21 F -0.15 -4.99 17.11 44.97 0.77 -4.22 16 22 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 23 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 24 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.07 2.34 7.65 -2.39 -0.02 2.32 16 28 H 0.07 2.34 7.68 -2.39 -0.02 2.32 16 29 H 0.15 3.37 6.30 -2.91 -0.02 3.36 16 30 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 31 H 0.06 0.46 8.08 -2.39 -0.02 0.44 16 32 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 33 H 0.35 3.54 8.98 -89.70 -0.81 2.73 16 34 H 0.36 2.37 9.08 -89.70 -0.81 1.56 16 35 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -67.51 305.98 2.60 -64.91 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -0.51 Total: 6.36 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 2.79 Total: -33.56 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: -1.54 Total: -66.70 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.93 Total: -13.14 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.77 Total: -4.22 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -67.51 2.60 -64.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232424524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.956 kcal (2) G-P(sol) polarization free energy of solvation -67.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds