Wall clock time and date at job start Mon Mar 30 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48501 * 109.47265 * 269.99572 * 3 2 1 5 5 H 1.48499 * 109.47488 * 30.00137 * 3 2 1 6 6 H 1.48504 * 109.47126 * 149.99795 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99462 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00231 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47204 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.46974 * 179.97438 * 10 9 7 12 12 C 1.35958 * 116.99953 * 179.97438 * 11 10 9 13 13 C 1.38666 * 120.06100 * 0.02671 * 12 11 10 14 14 C 1.38183 * 119.96766 * 179.72086 * 13 12 11 15 15 C 1.38260 * 120.09148 * 0.50857 * 14 13 12 16 16 C 1.50709 * 119.93287 * 179.76662 * 15 14 13 17 17 C 1.52998 * 109.46900 * 269.72424 * 16 15 14 18 18 N 1.46905 * 109.46978 * 179.97438 * 17 16 15 19 19 C 1.38252 * 120.13197 * 359.48774 * 15 14 13 20 20 C 1.38331 * 120.02708 * 0.25717 * 19 15 14 21 21 F 1.35104 * 120.04987 * 180.02562 * 20 19 15 22 22 H 0.97006 * 119.99999 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47024 * 60.00243 * 9 7 2 24 24 H 1.09000 * 109.47336 * 299.99845 * 9 7 2 25 25 H 1.09005 * 109.46790 * 60.00273 * 10 9 7 26 26 H 1.09000 * 109.46988 * 300.00231 * 10 9 7 27 27 H 1.08003 * 120.01325 * 359.97438 * 13 12 11 28 28 H 1.07994 * 119.94929 * 180.25339 * 14 13 12 29 29 H 1.08994 * 109.46971 * 149.72272 * 16 15 14 30 30 H 1.08996 * 109.46738 * 29.72056 * 16 15 14 31 31 H 1.09002 * 109.47288 * 59.99891 * 17 16 15 32 32 H 1.08995 * 109.47151 * 299.99951 * 17 16 15 33 33 H 1.00901 * 110.99869 * 180.02562 * 18 17 16 34 34 H 1.00896 * 110.99543 * 303.95346 * 18 17 16 35 35 H 1.07993 * 119.98711 * 180.23107 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0023 11 8 5.4504 -2.6367 0.0022 12 6 6.0676 -3.8481 0.0037 13 6 5.3136 -5.0118 0.0047 14 6 5.9429 -6.2420 0.0004 15 6 7.3236 -6.3144 0.0058 16 6 8.0063 -7.6580 0.0064 17 6 8.2377 -8.1118 1.4491 18 7 8.9025 -9.4218 1.4497 19 6 8.0793 -5.1566 0.0048 20 6 7.4547 -3.9224 0.0038 21 9 8.1927 -2.7907 0.0023 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6805 -0.8888 25 1 3.6584 -3.1510 -0.8876 26 1 3.6577 -3.1499 0.8925 27 1 4.2350 -4.9567 0.0046 28 1 5.3554 -7.1481 -0.0030 29 1 8.9641 -7.5791 -0.5078 30 1 7.3772 -8.3853 -0.5067 31 1 7.2798 -8.1906 1.9633 32 1 8.8667 -7.3844 1.9622 33 1 9.0662 -9.7437 2.3919 34 1 8.3691 -10.0981 0.9243 35 1 9.1576 -5.2159 0.0052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232444833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:46 Heat of formation + Delta-G solvation = -76.673215 kcal Electronic energy + Delta-G solvation = -17722.900768 eV Core-core repulsion = 14634.949602 eV Total energy + Delta-G solvation = -3087.951166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.60787 -39.90363 -37.90324 -35.42537 -33.40532 -31.61084 -30.84087 -30.36205 -27.22827 -25.31280 -22.93360 -22.89408 -21.16456 -20.46920 -18.21637 -17.01590 -16.77555 -16.39806 -15.98988 -15.89803 -15.29733 -14.92298 -14.57584 -14.27095 -14.22678 -13.88139 -13.41270 -12.95975 -12.70753 -12.56638 -12.34168 -11.81861 -11.49437 -11.45212 -11.28994 -10.92292 -10.82359 -10.26639 -10.04740 -9.85781 -9.39207 -9.09898 -8.90566 -8.65651 -7.94345 -6.17080 -4.18472 1.14293 1.26803 3.27105 3.34379 3.40472 3.49992 3.53761 4.13004 4.36408 4.36641 4.66078 4.74973 4.90865 4.95870 5.12987 5.17186 5.18407 5.37460 5.54506 5.60410 5.78364 5.82761 5.83872 5.99417 6.06833 6.20568 6.37648 6.45262 6.68669 6.72591 7.02048 7.03997 7.17989 7.56462 7.73082 8.34223 8.82823 9.43155 10.95284 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.040202 B = 0.003876 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.322424 B = 7221.991029 C = 7766.386737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.071 3.929 11 O -0.311 6.311 12 C 0.112 3.888 13 C -0.183 4.183 14 C -0.084 4.084 15 C -0.109 4.109 16 C -0.070 4.070 17 C 0.063 3.937 18 N -0.854 5.854 19 C -0.112 4.112 20 C 0.060 3.940 21 F -0.134 7.134 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.142 0.858 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.342 0.658 34 H 0.340 0.660 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.486 -16.208 1.405 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.046 4.046 10 C -0.003 4.003 11 O -0.225 6.225 12 C 0.064 3.936 13 C -0.202 4.202 14 C -0.102 4.102 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.067 4.067 18 N -0.383 5.383 19 C -0.131 4.131 20 C 0.040 3.960 21 F -0.113 7.113 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.008 -15.450 1.039 22.272 hybrid contribution -0.706 0.668 0.480 1.084 sum 15.301 -14.781 1.519 21.329 Atomic orbital electron populations 1.69891 1.06279 1.27287 1.50052 1.24924 0.94763 0.99232 0.94017 0.86762 0.80482 0.83233 0.78847 1.19999 1.21122 1.18706 1.20814 0.88209 0.94968 1.52594 0.90715 1.19593 0.96947 0.90039 0.98061 1.23172 0.74128 1.02328 1.00654 1.86205 1.24405 1.24795 1.87053 1.19196 0.90857 0.86715 0.96837 1.21294 1.01020 0.91353 1.06514 1.20860 0.93694 0.97218 0.98454 1.19409 0.93267 0.94310 1.03996 1.20448 1.00793 0.92834 0.96710 1.21816 0.97032 0.91361 0.96503 1.58735 1.54355 1.05101 1.20140 1.20790 1.00533 0.89800 1.02002 1.17001 0.86224 0.82883 1.09893 1.91490 1.76301 1.49160 1.94340 0.92391 0.95320 0.95729 0.92263 0.92251 0.84023 0.85481 0.90179 0.91072 0.95179 0.90758 0.84547 0.84829 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.53 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C -0.01 -0.22 4.41 -27.88 -0.12 -0.34 16 10 C 0.07 1.44 4.68 37.16 0.17 1.62 16 11 O -0.31 -6.23 10.00 -19.61 -0.20 -6.42 16 12 C 0.11 1.89 6.69 -39.17 -0.26 1.62 16 13 C -0.18 -2.59 9.04 -39.44 -0.36 -2.95 16 14 C -0.08 -0.96 9.69 -39.59 -0.38 -1.34 16 15 C -0.11 -1.17 5.13 -104.60 -0.54 -1.71 16 16 C -0.07 -0.58 5.60 -27.88 -0.16 -0.73 16 17 C 0.06 0.49 6.77 -3.82 -0.03 0.47 16 18 N -0.85 -5.72 9.62 -10.37 -0.10 -5.82 16 19 C -0.11 -1.37 9.67 -39.54 -0.38 -1.76 16 20 C 0.06 0.93 7.31 -39.30 -0.29 0.65 16 21 F -0.13 -2.29 17.11 2.25 0.04 -2.25 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 24 H 0.02 0.60 7.57 -51.93 -0.39 0.20 16 25 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 26 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 27 H 0.14 1.94 6.30 -52.48 -0.33 1.61 16 28 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.34 1.82 9.08 -39.29 -0.36 1.46 16 34 H 0.34 1.82 8.99 -39.29 -0.35 1.47 16 35 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 302.38 15.07 4.56 4.56 Total: -1.00 -30.95 302.38 -7.09 -38.04 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.72 Total: -1.13 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.77 Total: -17.57 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.67 Total: -32.16 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.20 Total: -6.42 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.95 -7.09 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232444833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.632 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds