Wall clock time and date at job start Mon Mar 30 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48501 * 109.47265 * 269.99572 * 3 2 1 5 5 H 1.48499 * 109.47488 * 30.00137 * 3 2 1 6 6 H 1.48504 * 109.47126 * 149.99795 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99462 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00231 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47204 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.46974 * 179.97438 * 10 9 7 12 12 C 1.35958 * 116.99953 * 179.97438 * 11 10 9 13 13 C 1.38666 * 120.06100 * 0.02671 * 12 11 10 14 14 C 1.38183 * 119.96766 * 179.72086 * 13 12 11 15 15 C 1.38260 * 120.09148 * 0.50857 * 14 13 12 16 16 C 1.50709 * 119.93287 * 179.76662 * 15 14 13 17 17 C 1.52998 * 109.46900 * 269.72424 * 16 15 14 18 18 N 1.46905 * 109.46978 * 179.97438 * 17 16 15 19 19 C 1.38252 * 120.13197 * 359.48774 * 15 14 13 20 20 C 1.38331 * 120.02708 * 0.25717 * 19 15 14 21 21 F 1.35104 * 120.04987 * 180.02562 * 20 19 15 22 22 H 0.97006 * 119.99999 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47024 * 60.00243 * 9 7 2 24 24 H 1.09000 * 109.47336 * 299.99845 * 9 7 2 25 25 H 1.09005 * 109.46790 * 60.00273 * 10 9 7 26 26 H 1.09000 * 109.46988 * 300.00231 * 10 9 7 27 27 H 1.08003 * 120.01325 * 359.97438 * 13 12 11 28 28 H 1.07994 * 119.94929 * 180.25339 * 14 13 12 29 29 H 1.08994 * 109.46971 * 149.72272 * 16 15 14 30 30 H 1.08996 * 109.46738 * 29.72056 * 16 15 14 31 31 H 1.09002 * 109.47288 * 59.99891 * 17 16 15 32 32 H 1.08995 * 109.47151 * 299.99951 * 17 16 15 33 33 H 1.00901 * 110.99869 * 180.02562 * 18 17 16 34 34 H 1.00896 * 110.99543 * 303.95346 * 18 17 16 35 35 H 1.07993 * 119.98711 * 180.23107 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0023 11 8 5.4504 -2.6367 0.0022 12 6 6.0676 -3.8481 0.0037 13 6 5.3136 -5.0118 0.0047 14 6 5.9429 -6.2420 0.0004 15 6 7.3236 -6.3144 0.0058 16 6 8.0063 -7.6580 0.0064 17 6 8.2377 -8.1118 1.4491 18 7 8.9025 -9.4218 1.4497 19 6 8.0793 -5.1566 0.0048 20 6 7.4547 -3.9224 0.0038 21 9 8.1927 -2.7907 0.0023 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6805 -0.8888 25 1 3.6584 -3.1510 -0.8876 26 1 3.6577 -3.1499 0.8925 27 1 4.2350 -4.9567 0.0046 28 1 5.3554 -7.1481 -0.0030 29 1 8.9641 -7.5791 -0.5078 30 1 7.3772 -8.3853 -0.5067 31 1 7.2798 -8.1906 1.9633 32 1 8.8667 -7.3844 1.9622 33 1 9.0662 -9.7437 2.3919 34 1 8.3691 -10.0981 0.9243 35 1 9.1576 -5.2159 0.0052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232444833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:45 Heat of formation + Delta-G solvation = -97.328115 kcal Electronic energy + Delta-G solvation = -17723.796431 eV Core-core repulsion = 14634.949602 eV Total energy + Delta-G solvation = -3088.846829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.83929 -41.09319 -39.07350 -36.17452 -35.40879 -33.04528 -32.08360 -31.57900 -28.26106 -26.96384 -24.25271 -23.72601 -22.46639 -21.81082 -19.68992 -18.68393 -17.90294 -17.72634 -17.33745 -16.58727 -16.36386 -16.31418 -16.00458 -15.76391 -15.12962 -14.89367 -14.65915 -14.35723 -14.29532 -13.89383 -13.40039 -13.27400 -12.84749 -12.60812 -12.35549 -12.20761 -12.14467 -11.98421 -11.81376 -11.55793 -11.47784 -10.84315 -9.96532 -9.58612 -9.10933 -8.37819 -6.44368 0.10160 0.20081 1.33487 1.35207 1.47679 2.14157 2.30483 2.50704 2.97275 3.18625 3.54349 3.72577 3.93236 4.05898 4.17494 4.21349 4.23896 4.31188 4.40304 4.48347 4.60937 4.73016 4.85511 4.96896 5.05796 5.09821 5.20919 5.22290 5.24933 5.47203 5.52134 5.72811 6.12835 6.25038 6.33696 6.61110 6.63365 7.21090 8.77660 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.040202 B = 0.003876 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.322424 B = 7221.991029 C = 7766.386737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.017 3.983 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.535 4.535 8 H 0.047 0.953 9 C -0.008 4.008 10 C 0.085 3.915 11 O -0.336 6.336 12 C 0.073 3.927 13 C -0.187 4.187 14 C -0.076 4.076 15 C -0.092 4.092 16 C -0.065 4.065 17 C 0.066 3.934 18 N -0.859 5.859 19 C -0.106 4.106 20 C 0.037 3.963 21 F -0.150 7.150 22 H 0.271 0.729 23 H 0.025 0.975 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.142 0.858 28 H 0.160 0.840 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.350 0.650 34 H 0.348 0.652 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.244 -17.834 1.364 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.573 4.573 8 H 0.065 0.935 9 C -0.045 4.045 10 C 0.011 3.989 11 O -0.250 6.250 12 C 0.027 3.973 13 C -0.206 4.206 14 C -0.094 4.094 15 C -0.093 4.093 16 C -0.103 4.103 17 C -0.065 4.065 18 N -0.390 5.390 19 C -0.124 4.124 20 C 0.018 3.982 21 F -0.129 7.129 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.160 0.840 28 H 0.178 0.822 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 17.784 -17.106 0.999 24.696 hybrid contribution -1.202 0.959 0.497 1.616 sum 16.582 -16.147 1.497 23.193 Atomic orbital electron populations 1.70012 1.07968 1.28524 1.51474 1.25819 0.95587 1.03114 0.93674 0.85733 0.79364 0.78673 0.79406 1.18987 1.20281 1.17829 1.21079 0.90236 0.94048 1.51966 0.93492 1.19454 0.94602 0.92790 0.97677 1.22779 0.75147 0.99736 1.01254 1.86099 1.23499 1.27058 1.88380 1.19516 0.91534 0.86373 0.99864 1.21421 1.01046 0.91627 1.06499 1.21238 0.94296 0.97235 0.96596 1.19772 0.93124 0.95160 1.01215 1.20477 1.01079 0.91390 0.97340 1.21725 0.97037 0.91813 0.95917 1.58705 1.54379 1.04955 1.20983 1.21095 1.01833 0.88818 1.00687 1.17388 0.85912 0.83569 1.11371 1.91442 1.76536 1.50225 1.94658 0.92027 0.95686 0.95757 0.91689 0.91709 0.84030 0.82214 0.89704 0.89235 0.95061 0.91605 0.83669 0.83843 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.94 44.62 27.47 68.60 1.88 46.51 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 7 C -0.54 -30.58 9.66 25.60 0.25 -30.33 16 8 H 0.05 2.86 7.99 -2.91 -0.02 2.83 16 9 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 10 C 0.08 3.50 4.68 71.98 0.34 3.84 16 11 O -0.34 -13.64 10.00 -93.08 -0.93 -14.57 16 12 C 0.07 2.47 6.69 22.53 0.15 2.62 16 13 C -0.19 -5.10 9.04 22.36 0.20 -4.89 16 14 C -0.08 -1.51 9.69 22.26 0.22 -1.29 16 15 C -0.09 -1.69 5.13 -19.85 -0.10 -1.80 16 16 C -0.07 -0.82 5.60 29.85 0.17 -0.65 16 17 C 0.07 0.81 6.77 86.30 0.58 1.40 16 18 N -0.86 -8.86 9.62 -186.71 -1.80 -10.66 16 19 C -0.11 -2.36 9.67 22.30 0.22 -2.15 16 20 C 0.04 1.15 7.31 22.45 0.16 1.31 16 21 F -0.15 -5.16 17.11 44.97 0.77 -4.39 16 22 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 23 H 0.02 1.23 7.20 -2.38 -0.02 1.21 16 24 H 0.02 1.17 7.57 -2.39 -0.02 1.16 16 25 H 0.06 2.54 7.66 -2.38 -0.02 2.52 16 26 H 0.06 2.53 7.66 -2.39 -0.02 2.52 16 27 H 0.14 3.78 6.30 -2.91 -0.02 3.76 16 28 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.35 2.79 9.08 -89.69 -0.81 1.98 16 34 H 0.35 2.57 8.99 -89.70 -0.81 1.77 16 35 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -67.58 302.38 2.44 -65.14 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -0.56 Total: 6.29 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 2.78 Total: -30.76 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -1.50 Total: -68.22 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.93 Total: -14.57 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.77 Total: -4.39 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Total: -67.58 2.44 -65.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232444833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.185 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds