Wall clock time and date at job start Mon Mar 30 2020 06:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48494 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 O 1.42906 * 109.46748 * 179.97438 * 11 10 9 13 13 C 1.35944 * 116.99735 * 179.97438 * 12 11 10 14 14 C 1.38732 * 120.03183 * 359.73255 * 13 12 11 15 15 C 1.38125 * 119.96761 * 179.69494 * 14 13 12 16 16 C 1.38472 * 120.03311 * 0.57589 * 15 14 13 17 17 F 1.35097 * 119.97105 * 179.74648 * 16 15 14 18 18 C 1.38438 * 120.05813 * 359.71826 * 16 15 14 19 19 C 1.38163 * 120.02978 * 359.97438 * 18 16 15 20 20 C 1.50699 * 120.01529 * 179.97438 * 19 18 16 21 21 N 1.46900 * 109.47287 * 260.02222 * 20 19 18 22 22 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 24 24 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 25 25 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 26 26 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 27 27 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 28 28 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 29 29 H 1.07997 * 120.01249 * 359.97438 * 14 13 12 30 30 H 1.08004 * 119.98490 * 180.27504 * 15 14 13 31 31 H 1.08001 * 119.98015 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.47222 * 20.02129 * 20 19 18 33 33 H 1.09000 * 109.47298 * 140.02053 * 20 19 18 34 34 H 1.00903 * 111.00439 * 179.97438 * 21 20 19 35 35 H 1.00897 * 111.00268 * 303.95570 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 8 2.4088 -6.0733 -0.0018 13 6 1.8892 -7.3295 -0.0019 14 6 0.5140 -7.5120 0.0042 15 6 -0.0126 -8.7890 -0.0022 16 6 0.8315 -9.8867 -0.0027 17 9 0.3151 -11.1351 -0.0039 18 6 2.2040 -9.7060 -0.0027 19 6 2.7334 -8.4299 -0.0026 20 6 4.2276 -8.2336 -0.0020 21 7 4.6812 -7.9316 1.3622 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8719 -3.6045 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 0.8533 -5.0451 0.8886 28 1 0.8538 -5.0445 -0.8914 29 1 -0.1445 -6.6561 0.0095 30 1 -1.0832 -8.9313 -0.0020 31 1 2.8612 -10.5631 -0.0026 32 1 4.7138 -9.1436 -0.3534 33 1 4.4856 -7.4056 -0.6622 34 1 5.6807 -7.7960 1.3893 35 1 4.1969 -7.1289 1.7350 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236225004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:40 Heat of formation + Delta-G solvation = -98.632503 kcal Electronic energy + Delta-G solvation = -17803.816487 eV Core-core repulsion = 14714.913095 eV Total energy + Delta-G solvation = -3088.903392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.82541 -41.30339 -38.54899 -35.97150 -35.70054 -33.67108 -31.83500 -30.45378 -28.71221 -26.07866 -25.51799 -23.35158 -22.56611 -21.76862 -19.14836 -18.49081 -18.13267 -17.78471 -17.29648 -16.58209 -16.51341 -16.47030 -15.69194 -15.53226 -15.19219 -14.88156 -14.65579 -14.29379 -13.87342 -13.70991 -13.39651 -13.24928 -13.03851 -12.76112 -12.55676 -12.38658 -12.08542 -11.73661 -11.53148 -11.44590 -11.26154 -10.56506 -10.15442 -9.62748 -9.08010 -8.22289 -6.33107 0.10073 0.17836 1.41254 1.43471 1.51456 2.13181 2.42180 2.48590 3.11924 3.24797 3.59344 3.69480 3.90383 4.03826 4.05334 4.09715 4.23536 4.36476 4.44957 4.52932 4.69920 4.82456 4.85931 4.94820 5.06467 5.10053 5.15119 5.31340 5.47406 5.66058 5.71059 5.80572 6.14765 6.18737 6.33823 6.57002 6.82485 7.36370 8.89365 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.034865 B = 0.003787 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.900083 B = 7391.638468 C = 8101.578961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.094 4.094 11 C 0.069 3.931 12 O -0.319 6.319 13 C 0.115 3.885 14 C -0.189 4.189 15 C -0.111 4.111 16 C 0.043 3.957 17 F -0.146 7.146 18 C -0.096 4.096 19 C -0.100 4.100 20 C 0.112 3.888 21 N -0.849 5.849 22 H 0.265 0.735 23 H -0.001 1.001 24 H 0.000 1.000 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.098 0.902 33 H 0.037 0.963 34 H 0.353 0.647 35 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -18.311 -0.207 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.132 4.132 11 C -0.006 4.006 12 O -0.232 6.232 13 C 0.069 3.931 14 C -0.208 4.208 15 C -0.130 4.130 16 C 0.024 3.976 17 F -0.125 7.125 18 C -0.115 4.115 19 C -0.101 4.101 20 C -0.018 4.018 21 N -0.379 5.379 22 H 0.073 0.927 23 H 0.017 0.983 24 H 0.018 0.982 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.173 0.827 31 H 0.178 0.822 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.167 0.833 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.607 -18.896 -0.031 19.450 hybrid contribution -0.097 1.796 -0.414 1.846 sum 4.510 -17.100 -0.444 17.690 Atomic orbital electron populations 1.70066 1.07707 1.27960 1.51374 1.25930 0.95756 1.03248 0.94609 0.85521 0.78308 0.78171 0.79197 1.19230 1.20852 1.19171 1.21609 0.93627 0.92177 1.50996 0.92105 1.18912 0.94204 0.92210 0.95608 1.21404 0.98742 0.91136 1.01892 1.22927 0.91737 0.84248 1.01658 1.86043 1.36933 1.12127 1.88137 1.19202 0.92297 0.84967 0.96619 1.21322 0.94028 0.98682 1.06718 1.21142 1.01377 0.90606 0.99837 1.17658 0.92302 0.79489 1.08185 1.91468 1.87456 1.39038 1.94540 1.20998 0.93329 0.97530 0.99678 1.19148 0.96217 0.89975 1.04756 1.20518 0.89258 1.01563 0.90502 1.58824 1.11095 1.47030 1.20991 0.92668 0.98256 0.98172 0.92051 0.92318 0.91525 0.91695 0.83695 0.82672 0.82234 0.88359 0.94513 0.83301 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 2 C 0.00 0.15 5.46 84.65 0.46 0.62 16 3 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.40 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.68 5.52 30.60 0.17 -3.51 16 11 C 0.07 2.21 4.74 71.98 0.34 2.55 16 12 O -0.32 -9.54 9.31 -92.92 -0.87 -10.40 16 13 C 0.12 3.10 6.65 22.50 0.15 3.25 16 14 C -0.19 -4.66 9.04 22.36 0.20 -4.46 16 15 C -0.11 -2.45 10.02 22.30 0.22 -2.23 16 16 C 0.04 0.98 7.30 22.37 0.16 1.14 16 17 F -0.15 -3.38 17.27 44.97 0.78 -2.61 16 18 C -0.10 -2.06 9.64 22.30 0.22 -1.84 16 19 C -0.10 -2.36 5.41 -19.78 -0.11 -2.46 16 20 C 0.11 2.29 6.57 85.56 0.56 2.86 16 21 N -0.85 -17.27 9.61 -190.01 -1.83 -19.09 16 22 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 23 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 24 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 2.05 7.65 -2.39 -0.02 2.03 16 28 H 0.06 2.01 7.68 -2.39 -0.02 1.99 16 29 H 0.15 3.39 6.30 -2.91 -0.02 3.37 16 30 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.16 2.66 8.04 -2.91 -0.02 2.64 16 32 H 0.10 1.59 8.00 -2.39 -0.02 1.57 16 33 H 0.04 0.82 7.85 -2.39 -0.02 0.80 16 34 H 0.35 5.65 9.08 -89.69 -0.81 4.84 16 35 H 0.34 7.80 8.93 -89.70 -0.80 7.00 16 Total: -1.00 -61.63 304.97 2.65 -58.98 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.50 Total: 15.33 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 2.76 Total: -32.53 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.54 Total: -74.00 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.87 Total: -10.40 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -61.63 2.65 -58.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236225004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.655 kcal (2) G-P(sol) polarization free energy of solvation -61.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds