Wall clock time and date at job start Mon Mar 30 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00061 * 2 1 4 4 H 1.48502 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47167 * 299.99463 * 3 2 1 6 6 H 1.48509 * 109.47314 * 59.99701 * 3 2 1 7 7 C 1.37876 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47225 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47046 * 180.02562 * 10 9 7 12 12 C 1.35945 * 116.99627 * 180.02562 * 11 10 9 13 13 C 1.38725 * 120.03454 * 359.72217 * 12 11 10 14 14 C 1.38137 * 119.96903 * 179.74688 * 13 12 11 15 15 C 1.38471 * 120.03207 * 0.53297 * 14 13 12 16 16 F 1.35095 * 119.97151 * 179.76827 * 15 14 13 17 17 C 1.38441 * 120.05813 * 359.74020 * 15 14 13 18 18 C 1.38167 * 120.03154 * 359.97438 * 17 15 14 19 19 C 1.50697 * 120.01516 * 180.02562 * 18 17 15 20 20 C 1.53008 * 109.46489 * 265.01536 * 19 18 17 21 21 N 1.46905 * 109.46532 * 179.97438 * 20 19 18 22 22 H 0.96994 * 120.00017 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46845 * 59.99984 * 9 7 2 24 24 H 1.08996 * 109.47472 * 300.00070 * 9 7 2 25 25 H 1.08999 * 109.47084 * 60.00299 * 10 9 7 26 26 H 1.08998 * 109.47592 * 300.00401 * 10 9 7 27 27 H 1.07997 * 120.01356 * 0.02562 * 13 12 11 28 28 H 1.07998 * 119.98053 * 180.24994 * 14 13 12 29 29 H 1.07998 * 119.98353 * 180.02562 * 17 15 14 30 30 H 1.08994 * 109.47546 * 25.01572 * 19 18 17 31 31 H 1.09002 * 109.47048 * 145.01994 * 19 18 17 32 32 H 1.09000 * 109.47276 * 299.99761 * 20 19 18 33 33 H 1.09002 * 109.47102 * 60.00491 * 20 19 18 34 34 H 1.00897 * 110.99889 * 56.04903 * 21 20 19 35 35 H 1.00899 * 110.99557 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 -0.0001 12 6 2.2711 -6.0398 0.0004 13 6 3.6565 -5.9680 -0.0044 14 6 4.4076 -7.1273 0.0013 15 6 3.7783 -8.3607 0.0008 16 9 4.5140 -9.4938 0.0017 17 6 2.3958 -8.4339 -0.0002 18 6 1.6421 -7.2759 0.0000 19 6 0.1372 -7.3559 -0.0004 20 6 -0.3782 -7.2573 -1.4376 21 7 -1.8451 -7.3360 -1.4381 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8720 -3.6044 -0.8894 27 1 4.1476 -5.0061 -0.0081 28 1 5.4861 -7.0716 0.0017 29 1 1.9062 -9.3965 -0.0002 30 1 -0.1763 -8.3052 0.4338 31 1 -0.2705 -6.5346 0.5890 32 1 -0.0647 -6.3079 -1.8718 33 1 0.0295 -8.0787 -2.0270 34 1 -2.2456 -6.6240 -0.8459 35 1 -2.2102 -7.2736 -2.3767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236235056.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:38 Heat of formation + Delta-G solvation = -81.763265 kcal Electronic energy + Delta-G solvation = -18038.081642 eV Core-core repulsion = 14949.909755 eV Total energy + Delta-G solvation = -3088.171887 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.74578 -40.03748 -37.17709 -35.39275 -33.44550 -32.03057 -30.52711 -29.22293 -27.33555 -25.21363 -23.13748 -22.43992 -21.15163 -20.59778 -17.93070 -17.06380 -16.67486 -16.17130 -15.73953 -15.58383 -15.25158 -14.84367 -14.61872 -14.40257 -14.01209 -13.69224 -13.07977 -12.68407 -12.64006 -12.41749 -12.22854 -11.81869 -11.32286 -11.26531 -11.02055 -10.91042 -10.75134 -10.53314 -9.92699 -9.75006 -9.36814 -8.98605 -8.68297 -8.52258 -7.82969 -6.17612 -4.22475 1.18714 1.33885 3.21807 3.29244 3.32363 3.61537 3.67417 4.30074 4.34799 4.56146 4.78680 4.86212 5.09972 5.19317 5.27520 5.34781 5.35959 5.60725 5.72235 5.90984 5.92011 5.92901 5.96865 6.16530 6.21801 6.27489 6.48387 6.58250 6.82620 7.11138 7.39161 7.43303 7.53933 7.70601 7.91813 8.15344 8.83151 9.42550 10.93914 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.004889 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.709841 B = 5726.030600 C = 6902.266772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.062 3.938 11 O -0.308 6.308 12 C 0.140 3.860 13 C -0.184 4.184 14 C -0.114 4.114 15 C 0.045 3.955 16 F -0.147 7.147 17 C -0.111 4.111 18 C -0.097 4.097 19 C -0.068 4.068 20 C 0.067 3.933 21 N -0.854 5.854 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.141 0.859 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.344 0.656 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -14.448 -1.254 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.011 4.011 11 O -0.221 6.221 12 C 0.093 3.907 13 C -0.203 4.203 14 C -0.133 4.133 15 C 0.025 3.975 16 F -0.126 7.126 17 C -0.130 4.130 18 C -0.099 4.099 19 C -0.105 4.105 20 C -0.064 4.064 21 N -0.383 5.383 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.044 -15.049 -0.946 15.382 hybrid contribution 0.987 1.832 -0.410 2.121 sum 4.031 -13.216 -1.356 13.884 Atomic orbital electron populations 1.69978 1.06108 1.26943 1.49669 1.24982 0.94904 0.99413 0.94810 0.86435 0.79993 0.83215 0.77776 1.19623 1.20807 1.20787 1.20996 0.93094 0.90162 1.52317 0.92302 1.19113 0.94117 0.88981 0.98815 1.23394 0.97224 0.80739 0.99791 1.86189 1.36227 1.12976 1.86728 1.19045 0.89889 0.87490 0.94299 1.21232 0.92920 0.99414 1.06726 1.20893 1.00590 0.90649 1.01153 1.17460 0.89208 0.82010 1.08792 1.91453 1.77154 1.49390 1.94628 1.20788 0.91599 0.98808 1.01803 1.18983 0.96207 0.89599 1.05105 1.20359 0.89433 1.03429 0.97324 1.21723 0.87869 1.00404 0.96407 1.58788 1.06292 1.57033 1.16171 0.92714 0.95498 0.95374 0.92957 0.93018 0.84165 0.84889 0.84495 0.90495 0.90060 0.94581 0.91415 0.84415 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.06 1.25 4.68 37.16 0.17 1.43 16 11 O -0.31 -5.78 9.27 -19.57 -0.18 -5.96 16 12 C 0.14 2.26 6.66 -39.23 -0.26 2.00 16 13 C -0.18 -2.69 9.04 -39.44 -0.36 -3.05 16 14 C -0.11 -1.49 10.02 -39.53 -0.40 -1.89 16 15 C 0.04 0.60 7.30 -39.42 -0.29 0.31 16 16 F -0.15 -1.98 17.27 2.25 0.04 -1.94 16 17 C -0.11 -1.43 9.66 -39.53 -0.38 -1.81 16 18 C -0.10 -1.38 5.15 -104.48 -0.54 -1.92 16 19 C -0.07 -0.89 5.33 -27.88 -0.15 -1.04 16 20 C 0.07 0.85 6.77 -3.82 -0.03 0.82 16 21 N -0.85 -9.78 9.62 -10.36 -0.10 -9.88 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 1.00 7.67 -51.93 -0.40 0.60 16 26 H 0.05 0.99 7.65 -51.93 -0.40 0.59 16 27 H 0.14 1.96 6.30 -52.49 -0.33 1.63 16 28 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.08 0.90 8.05 -51.93 -0.42 0.49 16 31 H 0.08 1.17 7.69 -51.93 -0.40 0.77 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.34 3.87 8.99 -39.29 -0.35 3.51 16 35 H 0.34 3.34 9.08 -39.29 -0.36 2.99 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -28.75 304.97 -7.44 -36.20 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.73 Total: 3.82 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.78 Total: -17.58 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.64 Total: -34.89 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.18 Total: -5.96 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.75 -7.44 -36.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236235056.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.566 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds