Wall clock time and date at job start Mon Mar 30 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00061 * 2 1 4 4 H 1.48502 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47167 * 299.99463 * 3 2 1 6 6 H 1.48509 * 109.47314 * 59.99701 * 3 2 1 7 7 C 1.37876 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47225 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47046 * 180.02562 * 10 9 7 12 12 C 1.35945 * 116.99627 * 180.02562 * 11 10 9 13 13 C 1.38725 * 120.03454 * 359.72217 * 12 11 10 14 14 C 1.38137 * 119.96903 * 179.74688 * 13 12 11 15 15 C 1.38471 * 120.03207 * 0.53297 * 14 13 12 16 16 F 1.35095 * 119.97151 * 179.76827 * 15 14 13 17 17 C 1.38441 * 120.05813 * 359.74020 * 15 14 13 18 18 C 1.38167 * 120.03154 * 359.97438 * 17 15 14 19 19 C 1.50697 * 120.01516 * 180.02562 * 18 17 15 20 20 C 1.53008 * 109.46489 * 265.01536 * 19 18 17 21 21 N 1.46905 * 109.46532 * 179.97438 * 20 19 18 22 22 H 0.96994 * 120.00017 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46845 * 59.99984 * 9 7 2 24 24 H 1.08996 * 109.47472 * 300.00070 * 9 7 2 25 25 H 1.08999 * 109.47084 * 60.00299 * 10 9 7 26 26 H 1.08998 * 109.47592 * 300.00401 * 10 9 7 27 27 H 1.07997 * 120.01356 * 0.02562 * 13 12 11 28 28 H 1.07998 * 119.98053 * 180.24994 * 14 13 12 29 29 H 1.07998 * 119.98353 * 180.02562 * 17 15 14 30 30 H 1.08994 * 109.47546 * 25.01572 * 19 18 17 31 31 H 1.09002 * 109.47048 * 145.01994 * 19 18 17 32 32 H 1.09000 * 109.47276 * 299.99761 * 20 19 18 33 33 H 1.09002 * 109.47102 * 60.00491 * 20 19 18 34 34 H 1.00897 * 110.99889 * 56.04903 * 21 20 19 35 35 H 1.00899 * 110.99557 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 -0.0001 12 6 2.2711 -6.0398 0.0004 13 6 3.6565 -5.9680 -0.0044 14 6 4.4076 -7.1273 0.0013 15 6 3.7783 -8.3607 0.0008 16 9 4.5140 -9.4938 0.0017 17 6 2.3958 -8.4339 -0.0002 18 6 1.6421 -7.2759 0.0000 19 6 0.1372 -7.3559 -0.0004 20 6 -0.3782 -7.2573 -1.4376 21 7 -1.8451 -7.3360 -1.4381 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8720 -3.6044 -0.8894 27 1 4.1476 -5.0061 -0.0081 28 1 5.4861 -7.0716 0.0017 29 1 1.9062 -9.3965 -0.0002 30 1 -0.1763 -8.3052 0.4338 31 1 -0.2705 -6.5346 0.5890 32 1 -0.0647 -6.3079 -1.8718 33 1 0.0295 -8.0787 -2.0270 34 1 -2.2456 -6.6240 -0.8459 35 1 -2.2102 -7.2736 -2.3767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236235056.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:37 Heat of formation + Delta-G solvation = -99.421403 kcal Electronic energy + Delta-G solvation = -18038.847356 eV Core-core repulsion = 14949.909755 eV Total energy + Delta-G solvation = -3088.937601 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.80814 -41.26387 -38.48396 -36.41347 -35.45443 -33.12530 -32.29280 -30.45970 -28.43663 -27.03440 -24.41305 -23.71675 -22.50047 -21.93888 -19.33922 -18.32432 -17.97100 -17.83626 -17.05526 -16.58999 -16.54175 -16.45279 -15.86944 -15.58973 -15.11909 -14.92688 -14.39625 -14.25100 -13.99903 -13.87009 -13.43298 -13.13703 -13.00336 -12.78190 -12.50162 -12.40932 -12.08348 -11.86684 -11.57490 -11.54881 -11.36555 -10.62732 -10.04171 -9.66952 -9.02796 -8.27372 -6.40329 0.12258 0.20687 1.41258 1.41469 1.54689 2.22640 2.47728 2.51195 3.07834 3.24119 3.53231 3.72849 3.84863 4.10188 4.12584 4.26433 4.28943 4.29436 4.37785 4.52079 4.69808 4.72667 4.85609 4.92683 5.10169 5.13707 5.21805 5.32080 5.41968 5.47555 5.65944 5.78953 6.06827 6.15176 6.46075 6.54086 6.74806 7.30073 8.85662 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.004889 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.709841 B = 5726.030600 C = 6902.266772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.081 3.919 11 O -0.326 6.326 12 C 0.110 3.890 13 C -0.188 4.188 14 C -0.111 4.111 15 C 0.045 3.955 16 F -0.145 7.145 17 C -0.105 4.105 18 C -0.099 4.099 19 C -0.064 4.064 20 C 0.072 3.928 21 N -0.852 5.852 22 H 0.266 0.734 23 H -0.002 1.002 24 H -0.001 1.001 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.144 0.856 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.011 0.989 33 H 0.079 0.921 34 H 0.343 0.657 35 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -15.360 -1.326 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.088 0.912 9 C -0.006 4.006 10 C 0.006 3.994 11 O -0.240 6.240 12 C 0.064 3.936 13 C -0.207 4.207 14 C -0.129 4.129 15 C 0.026 3.974 16 F -0.124 7.124 17 C -0.123 4.123 18 C -0.100 4.100 19 C -0.101 4.101 20 C -0.059 4.059 21 N -0.382 5.382 22 H 0.075 0.925 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.162 0.838 28 H 0.176 0.824 29 H 0.180 0.820 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.665 -15.989 -1.024 16.687 hybrid contribution 0.472 1.972 -0.390 2.065 sum 5.138 -14.016 -1.413 14.995 Atomic orbital electron populations 1.70113 1.07955 1.28094 1.50732 1.25977 0.95765 1.03501 0.94224 0.85292 0.79126 0.78182 0.77809 1.18166 1.20358 1.20362 1.21432 0.93838 0.91071 1.51922 0.91155 1.18930 0.94485 0.91216 0.96018 1.22924 0.95521 0.80192 1.00718 1.86119 1.36781 1.13290 1.87821 1.19339 0.90712 0.86983 0.96564 1.21321 0.92340 1.00297 1.06716 1.21121 1.01822 0.89947 1.00033 1.17600 0.89494 0.82161 1.08144 1.91466 1.77112 1.49253 1.94543 1.21009 0.91499 0.99285 1.00534 1.19124 0.96760 0.89346 1.04818 1.20332 0.88944 1.03521 0.97335 1.21645 0.88575 0.99524 0.96146 1.58805 1.05565 1.56879 1.16930 0.92500 0.98324 0.98250 0.91953 0.91992 0.83788 0.82432 0.81958 0.88677 0.92029 0.97076 0.90226 0.84433 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.60 5.34 29.85 0.16 1.76 16 10 C 0.08 3.28 4.68 71.98 0.34 3.62 16 11 O -0.33 -12.54 9.27 -92.93 -0.86 -13.40 16 12 C 0.11 3.51 6.66 22.50 0.15 3.66 16 13 C -0.19 -5.24 9.04 22.36 0.20 -5.04 16 14 C -0.11 -2.63 10.02 22.30 0.22 -2.41 16 15 C 0.05 1.09 7.30 22.37 0.16 1.25 16 16 F -0.14 -3.46 17.27 44.97 0.78 -2.68 16 17 C -0.10 -2.43 9.66 22.30 0.22 -2.22 16 18 C -0.10 -2.70 5.15 -19.77 -0.10 -2.80 16 19 C -0.06 -1.63 5.33 29.85 0.16 -1.47 16 20 C 0.07 1.80 6.77 86.30 0.58 2.38 16 21 N -0.85 -19.05 9.62 -186.69 -1.80 -20.85 16 22 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 23 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.06 2.38 7.67 -2.39 -0.02 2.36 16 26 H 0.06 2.36 7.65 -2.39 -0.02 2.34 16 27 H 0.14 3.84 6.30 -2.91 -0.02 3.82 16 28 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 31 H 0.06 1.82 7.69 -2.39 -0.02 1.80 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.34 7.78 8.99 -89.70 -0.81 6.97 16 35 H 0.35 6.65 9.08 -89.69 -0.81 5.83 16 Total: -1.00 -61.93 304.97 2.71 -59.23 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.51 Total: 18.11 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 2.79 Total: -30.06 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.51 Total: -75.71 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.86 Total: -13.40 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -61.93 2.71 -59.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236235056.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.194 kcal (2) G-P(sol) polarization free energy of solvation -61.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds