Wall clock time and date at job start Mon Mar 30 2020 07:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.06509 * 6 2 1 8 8 C 1.52998 * 109.47119 * 89.97567 * 7 6 2 9 9 N 1.46901 * 109.46709 * 180.02562 * 8 7 6 10 10 C 1.46891 * 110.99995 * 66.05184 * 9 8 7 11 11 C 1.46905 * 110.99516 * 190.00443 * 9 8 7 12 12 C 1.53007 * 109.46944 * 170.00230 * 11 9 8 13 13 C 1.50700 * 109.47251 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99351 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00016 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00049 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00057 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47129 * 89.99709 * 17 15 13 19 19 H 1.48491 * 109.47232 * 210.00228 * 17 15 13 20 20 H 1.48504 * 109.47182 * 330.00104 * 17 15 13 21 21 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 22 22 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 23 23 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 24 24 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 25 25 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.46886 * 209.98166 * 7 6 2 27 27 H 1.08999 * 109.46454 * 329.97614 * 7 6 2 28 28 H 1.08991 * 109.47264 * 300.00412 * 8 7 6 29 29 H 1.09003 * 109.46711 * 60.00752 * 8 7 6 30 30 H 1.08999 * 109.47658 * 59.99662 * 10 9 8 31 31 H 1.09004 * 109.47227 * 179.97438 * 10 9 8 32 32 H 1.09001 * 109.47313 * 299.99391 * 10 9 8 33 33 H 1.09001 * 109.46872 * 289.99455 * 11 9 8 34 34 H 1.08996 * 109.47404 * 50.00138 * 11 9 8 35 35 H 1.09001 * 109.46975 * 300.00062 * 12 11 9 36 36 H 1.09000 * 109.47095 * 59.99241 * 12 11 9 37 37 H 0.97006 * 120.00021 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0003 8 6 1.4614 -2.9908 -1.4430 9 7 0.9045 -4.3501 -1.4437 10 6 -0.4552 -4.3622 -0.8879 11 6 0.9263 -4.9272 -2.7944 12 6 0.5771 -6.4150 -2.7191 13 6 0.5989 -7.0070 -4.1048 14 1 0.8375 -6.3842 -4.9542 15 6 0.3142 -8.3435 -4.2880 16 7 0.0241 -9.1019 -3.2535 17 14 0.3419 -9.0774 -6.0056 18 1 1.7058 -9.5819 -6.3064 19 1 -0.6285 -10.1989 -6.0804 20 1 -0.0296 -8.0346 -6.9955 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.7965 2.1464 -0.0007 25 1 4.3078 1.7822 0.0010 26 1 2.3395 -3.1927 0.5138 27 1 0.6922 -2.5185 0.5130 28 1 0.7757 -2.3173 -1.9570 29 1 2.4230 -2.9915 -1.9562 30 1 -1.0992 -3.7204 -1.4891 31 1 -0.8439 -5.3805 -0.9006 32 1 -0.4317 -3.9948 0.1380 33 1 0.1965 -4.4141 -3.4206 34 1 1.9210 -4.8088 -3.2241 35 1 1.3068 -6.9282 -2.0928 36 1 -0.4176 -6.5334 -2.2893 37 1 -0.1765 -10.0421 -3.3825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258877791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:49 Heat of formation + Delta-G solvation = 17.966645 kcal Electronic energy + Delta-G solvation = -16052.694095 eV Core-core repulsion = 13535.059997 eV Total energy + Delta-G solvation = -2517.634097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.76500 -37.18982 -33.47993 -32.36606 -30.27390 -29.15115 -26.88848 -25.84338 -23.97451 -22.64733 -21.14352 -19.85877 -18.39789 -17.24843 -16.42679 -15.46449 -15.07649 -14.70552 -14.47498 -14.15112 -13.78337 -13.50705 -12.94208 -12.72595 -12.29690 -12.27734 -12.10633 -11.95946 -11.71260 -11.53308 -11.15644 -11.10966 -10.90846 -10.82250 -10.53421 -10.46030 -9.83500 -9.39569 -9.10799 -8.61492 -8.38703 -8.31485 -7.72290 -5.98065 -4.00354 0.93080 1.58886 1.95939 2.59998 3.33328 3.39346 3.42542 4.35399 4.52957 4.81420 4.94644 5.10475 5.29423 5.33653 5.37773 5.41669 5.45124 5.53506 5.72498 5.80618 5.82854 5.90404 5.96382 6.10429 6.17105 6.28824 6.36232 6.45637 6.53468 6.55530 6.98560 7.50196 7.57892 7.80847 7.91780 8.09961 8.45395 9.06900 9.63174 11.13324 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.040272 B = 0.003657 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.099360 B = 7654.128561 C = 7914.611352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.116 4.116 3 C -0.128 4.128 4 C -0.223 4.223 5 S 0.095 5.905 6 C -0.163 4.163 7 C -0.048 4.048 8 C 0.062 3.938 9 N -0.543 5.543 10 C 0.023 3.977 11 C 0.063 3.937 12 C 0.028 3.972 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.136 0.864 25 H 0.161 0.839 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.017 0.983 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 19.665 8.319 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.158 4.158 4 C -0.358 4.358 5 S 0.361 5.639 6 C -0.281 4.281 7 C -0.087 4.087 8 C -0.067 4.067 9 N -0.267 5.267 10 C -0.125 4.125 11 C -0.064 4.064 12 C -0.010 4.010 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.154 0.846 25 H 0.178 0.822 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.058 18.351 8.661 20.913 hybrid contribution -1.664 0.990 -1.475 2.434 sum 3.394 19.341 7.186 20.910 Atomic orbital electron populations 1.20513 0.89901 1.02771 1.02111 1.18847 0.97418 0.91603 1.04903 1.20022 0.92891 0.99124 1.03806 1.25525 0.99686 0.99184 1.11417 1.84374 1.06303 1.00153 1.73107 1.24396 0.95448 0.99289 1.08933 1.20195 1.01262 0.88924 0.98334 1.22056 0.99959 0.89883 0.94809 1.62079 1.21303 1.18204 1.25083 1.22435 0.89085 1.02630 0.98385 1.22350 0.99663 0.98766 0.85575 1.19106 0.97108 0.87896 0.96871 1.21198 1.47236 0.94434 0.93210 0.92824 1.24989 0.95341 0.97223 0.96758 1.69974 1.47460 1.06310 1.29508 0.86599 0.77832 0.78818 0.84771 1.20631 1.21232 1.19942 0.91399 0.91717 0.91336 0.84629 0.82175 0.89918 0.89908 0.95239 0.91080 0.96442 0.90230 0.92433 0.96226 0.92169 0.95703 0.96409 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.60 36.01 0.35 -0.55 16 2 C -0.12 -1.31 5.80 -106.25 -0.62 -1.92 16 3 C -0.13 -1.29 9.98 -41.21 -0.41 -1.71 16 4 C -0.22 -2.20 11.23 29.04 0.33 -1.88 16 5 S 0.10 1.08 23.33 -107.50 -2.51 -1.43 16 6 C -0.16 -1.99 5.76 -36.00 -0.21 -2.20 16 7 C -0.05 -0.62 5.00 -27.88 -0.14 -0.76 16 8 C 0.06 0.94 4.94 -3.82 -0.02 0.92 16 9 N -0.54 -9.96 4.76 -242.92 -1.16 -11.12 16 10 C 0.02 0.38 9.13 60.06 0.55 0.93 16 11 C 0.06 1.36 4.90 -3.82 -0.02 1.34 16 12 C 0.03 0.72 4.90 -27.88 -0.14 0.59 16 13 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 23 H 0.07 0.70 6.98 -51.93 -0.36 0.34 16 24 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 25 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.01 5.73 -51.93 -0.30 0.71 16 28 H 0.03 0.44 7.85 -51.93 -0.41 0.04 16 29 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 1.49 6.30 -51.93 -0.33 1.16 16 32 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 33 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.06 1.29 7.93 -51.93 -0.41 0.87 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.49 6.47 -51.93 -0.34 0.15 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -30.37 314.68 -9.76 -40.13 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.81 Total: -3.90 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -0.74 Total: -18.89 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.42 Total: -37.41 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.37 -9.76 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258877791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.094 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds