Wall clock time and date at job start Mon Mar 30 2020 07:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 122.53768 * 2 1 4 4 C 1.33396 * 114.91893 * 179.97438 * 3 2 1 5 5 S 1.75884 * 109.59211 * 359.76108 * 4 3 2 6 6 C 1.33390 * 122.53999 * 179.97438 * 2 1 3 7 7 C 1.50699 * 125.20229 * 0.02562 * 6 2 1 8 8 C 1.52991 * 109.47561 * 67.24213 * 7 6 2 9 9 C 1.53007 * 109.46783 * 187.24301 * 7 6 2 10 10 C 1.52997 * 109.47024 * 307.23990 * 7 6 2 11 11 N 1.46896 * 109.47531 * 180.02562 * 10 7 6 12 12 C 1.46900 * 111.00424 * 180.02562 * 11 10 7 13 13 C 1.50705 * 109.47159 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99973 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99952 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00035 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99854 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47015 * 59.99769 * 17 15 13 19 19 H 1.48503 * 109.46687 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47097 * 299.99346 * 17 15 13 21 21 H 1.09003 * 109.46516 * 264.77796 * 1 2 3 22 22 H 1.08992 * 109.47292 * 24.78392 * 1 2 3 23 23 H 1.09004 * 109.47019 * 144.79101 * 1 2 3 24 24 H 1.07997 * 122.53826 * 359.96124 * 3 2 1 25 25 H 1.07992 * 125.19840 * 179.97438 * 4 3 2 26 26 H 1.08998 * 109.47532 * 293.00611 * 8 7 6 27 27 H 1.09007 * 109.47421 * 173.00698 * 8 7 6 28 28 H 1.08997 * 109.47280 * 53.00886 * 8 7 6 29 29 H 1.08991 * 109.47279 * 305.30793 * 9 7 6 30 30 H 1.09000 * 109.47288 * 65.31106 * 9 7 6 31 31 H 1.09009 * 109.46770 * 185.30801 * 9 7 6 32 32 H 1.08999 * 109.47339 * 300.00562 * 10 7 6 33 33 H 1.08997 * 109.47131 * 60.00362 * 10 7 6 34 34 H 1.00903 * 111.00185 * 56.04570 * 11 10 7 35 35 H 1.08999 * 109.47112 * 299.99625 * 12 11 10 36 36 H 1.08999 * 109.46769 * 60.00392 * 12 11 10 37 37 H 0.96995 * 119.99992 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9386 -0.7304 0.0080 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 0.0006 8 6 0.9446 -2.7802 -1.3297 9 6 2.7849 -3.5332 0.1831 10 6 0.6522 -2.6603 1.1486 11 7 0.0962 -4.0200 1.1491 12 6 -0.8721 -4.1924 2.2403 13 6 -1.4202 -5.5959 2.2084 14 1 -1.0833 -6.2902 1.4528 15 6 -2.3526 -5.9932 3.1431 16 7 -2.7633 -5.1476 4.0628 17 14 -3.0315 -7.7331 3.1040 18 1 -1.9191 -8.7023 3.2723 19 1 -4.0104 -7.9073 4.2070 20 1 -3.7042 -7.9728 1.8020 21 1 -0.3632 -0.0935 1.0235 22 1 -0.3633 0.9329 -0.4308 23 1 -0.3633 -0.8397 -0.5925 24 1 1.7964 2.1464 -0.0006 25 1 4.3077 1.7823 0.0002 26 1 0.0643 -2.1417 -1.4037 27 1 0.6403 -3.8257 -1.3804 28 1 1.6239 -2.5593 -2.1530 29 1 3.5455 -3.3703 -0.5804 30 1 3.2289 -3.4084 1.1707 31 1 2.3861 -4.5433 0.0890 32 1 1.1574 -2.4743 2.0964 33 1 -0.1536 -1.9380 1.0186 34 1 0.8298 -4.7106 1.2038 35 1 -0.3780 -4.0166 3.1958 36 1 -1.6887 -3.4810 2.1171 37 1 -3.4190 -5.4273 4.7206 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259008394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:39 Heat of formation + Delta-G solvation = 2.066057 kcal Electronic energy + Delta-G solvation = -16710.230438 eV Core-core repulsion = 14191.906839 eV Total energy + Delta-G solvation = -2518.323599 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33402 -37.84627 -35.65434 -33.85894 -31.46744 -29.13522 -28.39543 -27.81002 -26.04457 -23.97923 -23.19016 -20.96588 -19.17208 -18.46084 -17.91721 -16.77034 -16.38207 -16.16264 -15.36998 -15.20577 -15.03526 -14.60241 -14.29690 -14.05495 -13.60155 -13.45200 -13.20300 -13.01653 -12.95386 -12.70818 -12.68885 -12.58305 -12.36929 -12.20793 -12.03952 -11.82688 -11.57156 -11.27765 -11.14324 -10.64028 -9.44948 -9.17991 -9.09658 -8.20876 -6.32168 0.13188 0.76868 1.15525 1.42517 1.46086 1.53994 1.82726 2.41414 3.12583 3.52869 3.81154 3.90531 4.08205 4.12178 4.27792 4.46971 4.59042 4.68043 4.71474 4.76694 4.77318 4.85368 4.97199 5.00872 5.11480 5.15005 5.18556 5.21584 5.28061 5.35226 5.46390 5.62511 5.67856 5.72457 6.03099 6.44855 6.73007 6.90542 7.38874 8.90662 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.038732 B = 0.004613 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.747894 B = 6068.291159 C = 6341.240007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.138 4.138 4 C -0.219 4.219 5 S 0.095 5.905 6 C -0.178 4.178 7 C 0.018 3.982 8 C -0.122 4.122 9 C -0.148 4.148 10 C 0.069 3.931 11 N -0.676 5.676 12 C 0.210 3.790 13 C -0.534 4.534 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.267 1.267 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.157 0.843 25 H 0.187 0.813 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.002 0.998 33 H 0.074 0.926 34 H 0.334 0.666 35 H -0.045 1.045 36 H 0.000 1.000 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.604 10.814 -10.216 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.129 4.129 3 C -0.168 4.168 4 C -0.354 4.354 5 S 0.361 5.639 6 C -0.296 4.296 7 C 0.015 3.985 8 C -0.180 4.180 9 C -0.205 4.205 10 C -0.061 4.061 11 N -0.307 5.307 12 C 0.082 3.918 13 C -0.572 4.572 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.192 1.192 21 H 0.077 0.923 22 H 0.100 0.900 23 H 0.090 0.910 24 H 0.174 0.826 25 H 0.205 0.795 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.020 0.980 33 H 0.092 0.908 34 H 0.152 0.848 35 H -0.027 1.027 36 H 0.018 0.982 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.405 10.162 -10.528 19.844 hybrid contribution -1.236 0.204 1.336 1.831 sum 12.169 10.365 -9.192 18.439 Atomic orbital electron populations 1.20816 0.89957 1.03558 1.01959 1.19052 0.97785 0.92107 1.03949 1.20258 0.93152 0.99508 1.03850 1.25916 1.00087 0.99257 1.10170 1.84058 1.05131 1.01084 1.73614 1.24440 0.96307 0.98430 1.10396 1.18949 0.94469 0.88770 0.96281 1.21742 0.99709 1.02487 0.94079 1.21956 0.97369 0.99388 1.01826 1.22158 0.96778 0.92136 0.95053 1.60585 1.18621 1.03276 1.48265 1.19181 0.90248 0.96114 0.86289 1.21508 1.24027 0.97878 1.13776 0.91527 1.25955 0.96703 1.02303 0.94721 1.70092 1.32375 1.37375 1.17709 0.85381 0.78169 0.78850 0.77861 1.19115 1.20934 1.19207 0.92308 0.89961 0.90978 0.82597 0.79530 0.92402 0.91700 0.92157 0.90947 0.93054 0.91058 0.98028 0.90797 0.84835 1.02733 0.98205 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.63 8.24 71.24 0.59 -2.05 16 2 C -0.12 -3.02 5.67 -20.92 -0.12 -3.14 16 3 C -0.14 -2.96 9.96 21.22 0.21 -2.75 16 4 C -0.22 -4.31 11.23 66.72 0.75 -3.56 16 5 S 0.09 2.15 21.74 -56.49 -1.23 0.92 16 6 C -0.18 -4.83 5.12 24.59 0.13 -4.70 16 7 C 0.02 0.52 0.57 -52.93 -0.03 0.49 16 8 C -0.12 -3.41 8.02 71.98 0.58 -2.83 16 9 C -0.15 -3.94 7.22 71.98 0.52 -3.42 16 10 C 0.07 2.55 4.34 86.30 0.37 2.93 16 11 N -0.68 -29.14 5.84 -517.94 -3.02 -32.17 16 12 C 0.21 11.41 5.44 85.56 0.47 11.87 16 13 C -0.53 -30.55 9.32 25.60 0.24 -30.31 16 14 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 15 C 0.00 0.07 5.46 84.65 0.46 0.54 16 16 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 17 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H 0.06 1.63 7.23 -2.39 -0.02 1.61 16 22 H 0.08 1.66 8.11 -2.39 -0.02 1.64 16 23 H 0.07 1.94 4.39 -2.38 -0.01 1.93 16 24 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 25 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 26 H 0.06 1.63 5.37 -2.39 -0.01 1.62 16 27 H 0.06 1.94 7.82 -2.38 -0.02 1.92 16 28 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.07 1.66 7.54 -2.39 -0.02 1.64 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.94 6.85 -2.38 -0.02 1.92 16 32 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.07 2.78 4.61 -2.39 -0.01 2.77 16 34 H 0.33 13.65 6.89 -89.69 -0.62 13.03 16 35 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 36 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -63.75 304.04 2.66 -61.09 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.44 Total: 17.49 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 4.16 Total: -36.93 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -2.74 Total: -88.93 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.23 Total: 0.92 kcal Total: -63.75 2.66 -61.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259008394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.152 kcal (2) G-P(sol) polarization free energy of solvation -63.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds