Wall clock time and date at job start Mon Mar 30 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86799 * 120.00233 * 2 1 4 4 H 1.48500 * 109.47176 * 270.53356 * 3 2 1 5 5 H 1.48500 * 109.46986 * 30.53928 * 3 2 1 6 6 H 1.48504 * 109.46883 * 150.53495 * 3 2 1 7 7 C 1.39886 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99922 * 342.50925 * 7 2 1 9 9 C 1.40987 * 119.99987 * 162.50366 * 7 2 1 10 10 C 1.40770 * 120.26304 * 330.55025 * 9 7 2 11 11 C 1.36506 * 119.95530 * 179.97438 * 10 9 7 12 12 F 1.35105 * 119.74219 * 179.97438 * 11 10 9 13 13 C 1.39428 * 120.51893 * 359.97438 * 11 10 9 14 14 F 1.35091 * 119.72948 * 179.97438 * 13 11 10 15 15 C 1.38427 * 120.53775 * 0.04052 * 13 11 10 16 16 C 1.38626 * 120.02313 * 359.96082 * 15 13 11 17 17 N 1.38829 * 120.24916 * 180.29557 * 16 15 13 18 18 C 1.48524 * 111.00208 * 0.13124 * 17 16 15 19 19 C 1.54938 * 103.22663 * 159.72217 * 18 17 16 20 20 C 1.54592 * 102.92237 * 322.57995 * 19 18 17 21 21 C 1.47910 * 110.99849 * 117.53020 * 17 16 15 22 22 H 0.97005 * 120.00278 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.02322 * 359.97438 * 10 9 7 24 24 H 1.07991 * 119.98436 * 179.97438 * 15 13 11 25 25 H 1.09002 * 110.66585 * 278.15582 * 18 17 16 26 26 H 1.08992 * 110.66939 * 41.28487 * 18 17 16 27 27 H 1.09009 * 110.72365 * 204.22953 * 19 18 17 28 28 H 1.08999 * 110.73144 * 80.94285 * 19 18 17 29 29 H 1.08995 * 110.31498 * 263.04356 * 20 19 18 30 30 H 1.09007 * 110.30591 * 140.87248 * 20 19 18 31 31 H 1.09000 * 109.91434 * 333.50062 * 21 17 16 32 32 H 1.08993 * 109.91798 * 94.79916 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4794 2.0529 -1.4000 5 1 1.4464 2.6493 0.7114 6 1 3.5464 1.4368 0.6887 7 6 2.0085 -1.2115 0.0005 8 1 1.5059 -2.1250 0.2821 9 6 3.3695 -1.2400 -0.3665 10 6 3.8775 -0.2979 -1.2810 11 6 5.1963 -0.3309 -1.6316 12 9 5.6792 0.5749 -2.5100 13 6 6.0490 -1.2922 -1.0903 14 9 7.3514 -1.3105 -1.4488 15 6 5.5717 -2.2286 -0.1895 16 6 4.2362 -2.2157 0.1822 17 7 3.7538 -3.1489 1.0898 18 6 4.8348 -4.0632 1.5385 19 6 4.2826 -4.6405 2.8661 20 6 3.5546 -3.4295 3.4933 21 6 3.2513 -2.4873 2.3136 22 1 -0.4851 0.8401 0.0004 23 1 3.2242 0.4504 -1.7049 24 1 6.2399 -2.9694 0.2239 25 1 4.9935 -4.8582 0.8098 26 1 5.7579 -3.5108 1.7138 27 1 5.0965 -4.9764 3.5087 28 1 3.5826 -5.4531 2.6718 29 1 4.2006 -2.9332 4.2175 30 1 2.6278 -3.7502 3.9692 31 1 3.7626 -1.5355 2.4577 32 1 2.1763 -2.3262 2.2339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259569443.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:39 Heat of formation + Delta-G solvation = -77.483639 kcal Electronic energy + Delta-G solvation = -18933.503331 eV Core-core repulsion = 15722.056717 eV Total energy + Delta-G solvation = -3211.446613 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.17620 -49.22478 -41.02971 -38.23518 -35.63070 -33.22462 -32.47346 -29.68350 -29.28589 -26.82176 -24.49516 -23.03385 -21.76141 -21.33929 -19.81936 -18.75560 -17.92767 -17.54488 -17.06971 -16.80870 -16.74766 -16.14820 -15.73290 -15.39851 -15.34139 -14.71061 -14.55786 -14.05055 -13.97965 -13.73086 -13.18795 -13.04118 -12.75647 -12.65273 -12.26663 -12.13009 -11.99634 -11.86222 -11.72710 -11.28785 -11.11045 -10.24652 -9.70160 -9.03825 -8.76200 -6.52011 0.30526 0.39808 1.21629 1.29852 1.39405 2.01554 2.26158 3.03922 3.19544 3.40171 3.65287 3.81281 3.87143 4.01363 4.20624 4.39272 4.47365 4.54536 4.71067 4.77679 4.94949 4.97253 5.01087 5.06339 5.09551 5.22844 5.25335 5.27582 5.41463 5.52170 5.96795 6.10810 6.19015 6.29887 6.64649 6.74375 8.01226 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.012473 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.346272 B = 2244.229642 C = 3793.020900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.060 3.940 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.422 4.422 8 H 0.086 0.914 9 C 0.083 3.917 10 C -0.266 4.266 11 C 0.083 3.917 12 F -0.155 7.155 13 C -0.061 4.061 14 F -0.156 7.156 15 C -0.131 4.131 16 C 0.024 3.976 17 N -0.465 5.465 18 C 0.021 3.979 19 C -0.112 4.112 20 C -0.126 4.126 21 C 0.047 3.953 22 H 0.300 0.700 23 H 0.120 0.880 24 H 0.156 0.844 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.773 -4.164 6.405 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.160 4.160 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.450 4.450 8 H 0.104 0.896 9 C 0.079 3.921 10 C -0.287 4.287 11 C 0.063 3.937 12 F -0.134 7.134 13 C -0.083 4.083 14 F -0.135 7.135 15 C -0.153 4.153 16 C -0.075 4.075 17 N -0.181 5.181 18 C -0.105 4.105 19 C -0.150 4.150 20 C -0.164 4.164 21 C -0.079 4.079 22 H 0.111 0.889 23 H 0.137 0.863 24 H 0.173 0.827 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.061 -4.358 6.180 9.099 hybrid contribution 0.783 1.553 -0.456 1.797 sum 5.843 -2.805 5.725 8.648 Atomic orbital electron populations 1.69704 1.08704 1.31980 1.33493 1.26671 0.95210 1.03415 0.90657 0.85814 0.79713 0.78006 0.79554 1.19190 1.19295 1.18184 1.19333 0.92504 0.95924 1.37213 0.89624 1.17372 0.93190 0.90986 0.90600 1.20603 0.93647 1.07673 1.06796 1.17333 0.92890 0.90200 0.93326 1.91368 1.88844 1.65903 1.67256 1.17073 0.78370 1.03797 1.09042 1.91329 1.33665 1.96748 1.91753 1.20942 0.95112 0.99753 0.99498 1.18816 0.90409 0.97536 1.00766 1.61488 1.30645 1.15420 1.10559 1.23576 0.93009 0.95873 0.98069 1.22470 1.00472 0.97351 0.94707 1.22457 1.01663 0.95945 0.96365 1.22794 1.00999 0.95932 0.88140 0.88927 0.86254 0.82660 0.89391 0.92362 0.88370 0.90484 0.90192 0.90077 0.95219 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.43 13.93 21.82 0.30 -40.13 16 2 C 0.06 2.92 5.41 85.23 0.46 3.38 16 3 Si 0.94 40.59 24.53 68.60 1.68 42.27 16 4 H -0.27 -11.40 6.47 99.48 0.64 -10.76 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.26 -11.50 7.02 99.48 0.70 -10.80 16 7 C -0.42 -21.26 7.53 23.34 0.18 -21.08 16 8 H 0.09 4.62 7.11 -2.91 -0.02 4.60 16 9 C 0.08 4.02 5.02 -21.16 -0.11 3.91 16 10 C -0.27 -12.86 7.16 22.48 0.16 -12.70 16 11 C 0.08 3.89 7.25 22.15 0.16 4.05 16 12 F -0.15 -7.09 17.16 44.97 0.77 -6.32 16 13 C -0.06 -2.70 7.32 22.60 0.17 -2.54 16 14 F -0.16 -6.58 17.16 44.97 0.77 -5.81 16 15 C -0.13 -5.27 8.83 22.41 0.20 -5.07 16 16 C 0.02 1.01 5.33 38.95 0.21 1.22 16 17 N -0.47 -17.50 4.89 -681.20 -3.33 -20.83 16 18 C 0.02 0.59 5.42 86.65 0.47 1.06 16 19 C -0.11 -2.47 7.06 31.80 0.22 -2.25 16 20 C -0.13 -3.15 6.93 31.47 0.22 -2.93 16 21 C 0.05 1.66 5.39 86.45 0.47 2.12 16 22 H 0.30 13.37 8.30 -92.70 -0.77 12.60 16 23 H 0.12 5.78 4.48 -2.91 -0.01 5.76 16 24 H 0.16 5.18 5.67 -2.92 -0.02 5.17 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 1.58 6.14 -2.39 -0.01 1.57 16 27 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.03 1.12 7.75 -2.39 -0.02 1.10 16 32 H 0.07 2.73 6.69 -2.39 -0.02 2.71 16 Total: -1.00 -54.55 263.76 4.08 -50.47 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.08 Total: 11.17 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 2.80 Total: -30.81 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -3.03 Total: -60.96 kcal Atomic # 9 Polarization: -13.67 SS G_CDS: 1.54 Total: -12.13 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.68 Total: 42.27 kcal Total: -54.55 4.08 -50.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259569443.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.018 kcal (2) G-P(sol) polarization free energy of solvation -54.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds