Wall clock time and date at job start Mon Mar 30 2020 07:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 116.99660 * 2 1 4 4 C 1.38727 * 120.03012 * 273.15647 * 3 2 1 5 5 C 1.50707 * 120.01449 * 359.95306 * 4 3 2 6 6 C 1.38129 * 119.97017 * 179.97438 * 4 3 2 7 7 C 1.38472 * 120.02978 * 0.02562 * 6 4 3 8 8 F 1.35098 * 119.96929 * 179.97438 * 7 6 4 9 9 C 1.38440 * 120.06017 * 359.69770 * 7 6 4 10 10 C 1.38166 * 120.02624 * 0.55736 * 9 7 6 11 11 C 1.50702 * 120.01467 * 179.74567 * 10 9 7 12 12 H 1.09001 * 109.47294 * 136.37021 * 11 10 9 13 13 N 1.46901 * 109.47172 * 256.37474 * 11 10 9 14 14 C 1.53005 * 109.47003 * 16.37409 * 11 10 9 15 15 C 1.50694 * 109.47195 * 175.18564 * 14 11 10 16 16 H 1.08001 * 120.00362 * 359.97438 * 15 14 11 17 17 C 1.37882 * 120.00065 * 180.02562 * 15 14 11 18 18 N 1.31513 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00016 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47185 * 119.99688 * 19 17 15 22 22 H 1.48496 * 109.47559 * 239.99813 * 19 17 15 23 23 H 1.09008 * 109.47226 * 295.30211 * 1 2 3 24 24 H 1.09001 * 109.47446 * 55.29763 * 1 2 3 25 25 H 1.08999 * 109.47226 * 175.30287 * 1 2 3 26 26 H 1.09001 * 109.46352 * 90.00483 * 5 4 3 27 27 H 1.09001 * 109.46716 * 210.00270 * 5 4 3 28 28 H 1.08997 * 109.47010 * 330.00480 * 5 4 3 29 29 H 1.08000 * 119.98389 * 179.97438 * 6 4 3 30 30 H 1.08001 * 119.98297 * 180.27839 * 9 7 6 31 31 H 1.00900 * 110.99755 * 296.04308 * 13 11 10 32 32 H 1.00902 * 110.99805 * 59.99963 * 13 11 10 33 33 H 1.09001 * 109.47094 * 295.18471 * 14 11 10 34 34 H 1.09000 * 109.47089 * 55.18339 * 14 11 10 35 35 H 0.96994 * 119.99828 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 2.3024 1.8600 -1.1992 5 6 1.8977 1.2216 -2.5031 6 6 2.9290 3.0910 -1.1978 7 6 3.3018 3.6774 0.0000 8 9 3.9151 4.8811 0.0000 9 6 3.0416 3.0338 1.1978 10 6 2.4197 1.8000 1.1989 11 6 2.1417 1.0971 2.5026 12 1 1.1350 0.6797 2.4829 13 7 3.1168 0.0151 2.6932 14 6 2.2570 2.0964 3.6555 15 6 1.8642 1.4230 4.9451 16 1 1.5621 0.3861 4.9427 17 6 1.8895 2.1309 6.1280 18 7 2.2568 3.3937 6.1309 19 14 1.4019 1.2964 7.7265 20 1 1.0315 -0.1158 7.4548 21 1 2.5449 1.3353 8.6740 22 1 0.2413 2.0062 8.3217 23 1 -0.3634 0.4392 0.9291 24 1 -0.3634 0.5851 -0.8449 25 1 -0.3633 -1.0242 -0.0842 26 1 0.8855 1.5330 -2.7611 27 1 2.5854 1.5335 -3.2891 28 1 1.9294 0.1369 -2.4017 29 1 3.1289 3.5960 -2.1313 30 1 3.3289 3.4943 2.1315 31 1 3.0171 -0.6913 1.9796 32 1 4.0586 0.3767 2.7149 33 1 3.2856 2.4497 3.7286 34 1 1.5946 2.9422 3.4708 35 1 2.2749 3.8916 6.9632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259904662.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:03 Heat of formation + Delta-G solvation = -70.093022 kcal Electronic energy + Delta-G solvation = -18830.993673 eV Core-core repulsion = 15743.327846 eV Total energy + Delta-G solvation = -3087.665827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -48.67573 -40.16790 -37.06038 -35.63390 -32.57480 -31.81667 -29.51338 -28.48893 -27.29977 -26.22444 -24.38537 -22.26807 -21.63452 -19.38324 -17.65905 -17.11611 -16.76281 -15.85019 -15.68889 -15.19722 -15.02630 -14.46134 -14.31693 -14.09911 -13.51218 -13.37992 -13.21928 -13.03585 -12.86135 -12.20719 -11.99461 -11.69072 -11.23635 -11.20205 -11.11289 -10.74495 -10.51972 -10.29043 -9.95963 -9.35540 -9.05525 -8.69046 -8.31370 -8.27322 -7.83724 -5.92598 -3.90831 1.15240 1.32502 3.37318 3.40655 3.44805 3.50662 4.01486 4.37535 4.53447 4.82352 4.82915 5.23428 5.27389 5.37291 5.38507 5.43096 5.50069 5.53597 5.58701 5.62512 5.76192 5.86986 6.04280 6.16234 6.32098 6.42361 6.60676 6.81729 6.94265 7.50785 7.60341 7.65884 7.98453 8.08609 8.23216 8.52412 9.15392 9.71469 11.19539 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.006371 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.599996 B = 4394.062254 C = 5273.122746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.330 6.330 3 C 0.079 3.921 4 C -0.085 4.085 5 C -0.109 4.109 6 C -0.155 4.155 7 C 0.094 3.906 8 F -0.141 7.141 9 C -0.132 4.132 10 C -0.092 4.092 11 C 0.139 3.861 12 H 0.080 0.920 13 N -0.812 5.812 14 C 0.028 3.972 15 C -0.493 4.493 16 H 0.063 0.937 17 C 0.050 3.950 18 N -0.903 5.903 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.287 1.287 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.153 0.847 31 H 0.328 0.672 32 H 0.333 0.667 33 H 0.019 0.981 34 H 0.021 0.979 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -3.269 -16.552 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.247 6.247 3 C 0.035 3.965 4 C -0.086 4.086 5 C -0.165 4.165 6 C -0.175 4.175 7 C 0.075 3.925 8 F -0.120 7.120 9 C -0.151 4.151 10 C -0.095 4.095 11 C 0.027 3.973 12 H 0.097 0.903 13 N -0.338 5.338 14 C -0.009 4.009 15 C -0.531 4.531 16 H 0.081 0.919 17 C -0.149 4.149 18 N -0.544 5.544 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.214 1.214 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.150 0.850 30 H 0.171 0.829 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.453 -3.414 -15.702 16.134 hybrid contribution 0.120 0.515 -0.044 0.531 sum -1.333 -2.898 -15.746 16.066 Atomic orbital electron populations 1.22992 0.79145 1.02921 1.00977 1.85986 1.19760 1.24631 1.94284 1.18434 0.99441 0.87251 0.91382 1.19936 0.99322 0.93850 0.95463 1.20685 1.01307 1.01349 0.93203 1.20773 1.03367 0.96271 0.97058 1.17770 0.97885 0.82289 0.94600 1.91483 1.80538 1.42522 1.97432 1.21396 1.00358 0.95477 0.97917 1.21634 0.96292 0.93859 0.97725 1.20662 0.96099 0.91716 0.88784 0.90252 1.58931 1.07695 1.13745 1.53444 1.19257 0.97334 0.92843 0.91492 1.21170 1.43150 0.97446 0.91339 0.91872 1.25020 0.95905 0.94863 0.99147 1.69966 1.49220 1.08386 1.26785 0.86524 0.77925 0.79700 0.83762 1.19715 1.21245 1.21376 0.92940 0.93913 0.88937 0.91341 0.91465 0.90665 0.84954 0.82905 0.86067 0.85438 0.96266 0.96107 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.91 101.05 1.10 1.50 16 2 O -0.33 -4.75 8.41 -19.59 -0.16 -4.92 16 3 C 0.08 1.23 5.67 -39.24 -0.22 1.00 16 4 C -0.09 -1.15 5.89 -104.48 -0.62 -1.77 16 5 C -0.11 -1.10 9.63 36.01 0.35 -0.75 16 6 C -0.16 -2.14 9.68 -39.54 -0.38 -2.52 16 7 C 0.09 1.51 7.30 -39.42 -0.29 1.23 16 8 F -0.14 -2.32 17.27 2.25 0.04 -2.28 16 9 C -0.13 -2.38 9.02 -39.53 -0.36 -2.73 16 10 C -0.09 -1.63 5.34 -104.48 -0.56 -2.19 16 11 C 0.14 2.81 2.55 -68.86 -0.18 2.63 16 12 H 0.08 1.65 6.98 -51.93 -0.36 1.29 16 13 N -0.81 -15.50 8.93 -5.65 -0.05 -15.55 16 14 C 0.03 0.70 3.36 -27.88 -0.09 0.60 16 15 C -0.49 -13.79 8.83 -34.44 -0.30 -14.09 16 16 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 17 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 19 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H 0.05 0.67 7.34 -51.92 -0.38 0.29 16 24 H 0.04 0.43 8.03 -51.93 -0.42 0.02 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 29 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.15 3.01 6.07 -52.49 -0.32 2.69 16 31 H 0.33 5.56 8.68 -39.29 -0.34 5.21 16 32 H 0.33 6.19 8.99 -39.29 -0.35 5.83 16 33 H 0.02 0.51 7.12 -51.93 -0.37 0.14 16 34 H 0.02 0.55 7.98 -51.93 -0.41 0.14 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 299.61 15.07 4.51 4.51 Total: -1.00 -30.43 299.61 -6.17 -36.60 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.58 Total: 6.71 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.65 Total: -15.75 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.69 Total: -41.90 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.16 Total: -4.92 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.43 -6.17 -36.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904662.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.495 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.06 seconds