Wall clock time and date at job start Mon Mar 30 2020 07:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 116.99660 * 2 1 4 4 C 1.38727 * 120.03012 * 273.15647 * 3 2 1 5 5 C 1.50707 * 120.01449 * 359.95306 * 4 3 2 6 6 C 1.38129 * 119.97017 * 179.97438 * 4 3 2 7 7 C 1.38472 * 120.02978 * 0.02562 * 6 4 3 8 8 F 1.35098 * 119.96929 * 179.97438 * 7 6 4 9 9 C 1.38440 * 120.06017 * 359.69770 * 7 6 4 10 10 C 1.38166 * 120.02624 * 0.55736 * 9 7 6 11 11 C 1.50702 * 120.01467 * 179.74567 * 10 9 7 12 12 H 1.09001 * 109.47294 * 136.37021 * 11 10 9 13 13 N 1.46901 * 109.47172 * 256.37474 * 11 10 9 14 14 C 1.53005 * 109.47003 * 16.37409 * 11 10 9 15 15 C 1.50694 * 109.47195 * 175.18564 * 14 11 10 16 16 H 1.08001 * 120.00362 * 359.97438 * 15 14 11 17 17 C 1.37882 * 120.00065 * 180.02562 * 15 14 11 18 18 N 1.31513 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00016 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47185 * 119.99688 * 19 17 15 22 22 H 1.48496 * 109.47559 * 239.99813 * 19 17 15 23 23 H 1.09008 * 109.47226 * 295.30211 * 1 2 3 24 24 H 1.09001 * 109.47446 * 55.29763 * 1 2 3 25 25 H 1.08999 * 109.47226 * 175.30287 * 1 2 3 26 26 H 1.09001 * 109.46352 * 90.00483 * 5 4 3 27 27 H 1.09001 * 109.46716 * 210.00270 * 5 4 3 28 28 H 1.08997 * 109.47010 * 330.00480 * 5 4 3 29 29 H 1.08000 * 119.98389 * 179.97438 * 6 4 3 30 30 H 1.08001 * 119.98297 * 180.27839 * 9 7 6 31 31 H 1.00900 * 110.99755 * 296.04308 * 13 11 10 32 32 H 1.00902 * 110.99805 * 59.99963 * 13 11 10 33 33 H 1.09001 * 109.47094 * 295.18471 * 14 11 10 34 34 H 1.09000 * 109.47089 * 55.18339 * 14 11 10 35 35 H 0.96994 * 119.99828 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 2.3024 1.8600 -1.1992 5 6 1.8977 1.2216 -2.5031 6 6 2.9290 3.0910 -1.1978 7 6 3.3018 3.6774 0.0000 8 9 3.9151 4.8811 0.0000 9 6 3.0416 3.0338 1.1978 10 6 2.4197 1.8000 1.1989 11 6 2.1417 1.0971 2.5026 12 1 1.1350 0.6797 2.4829 13 7 3.1168 0.0151 2.6932 14 6 2.2570 2.0964 3.6555 15 6 1.8642 1.4230 4.9451 16 1 1.5621 0.3861 4.9427 17 6 1.8895 2.1309 6.1280 18 7 2.2568 3.3937 6.1309 19 14 1.4019 1.2964 7.7265 20 1 1.0315 -0.1158 7.4548 21 1 2.5449 1.3353 8.6740 22 1 0.2413 2.0062 8.3217 23 1 -0.3634 0.4392 0.9291 24 1 -0.3634 0.5851 -0.8449 25 1 -0.3633 -1.0242 -0.0842 26 1 0.8855 1.5330 -2.7611 27 1 2.5854 1.5335 -3.2891 28 1 1.9294 0.1369 -2.4017 29 1 3.1289 3.5960 -2.1313 30 1 3.3289 3.4943 2.1315 31 1 3.0171 -0.6913 1.9796 32 1 4.0586 0.3767 2.7149 33 1 3.2856 2.4497 3.7286 34 1 1.5946 2.9422 3.4708 35 1 2.2749 3.8916 6.9632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259904662.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:57 Heat of formation + Delta-G solvation = -90.109907 kcal Electronic energy + Delta-G solvation = -18831.861670 eV Core-core repulsion = 15743.327846 eV Total energy + Delta-G solvation = -3088.533824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.95948 -41.38665 -38.25943 -37.16201 -34.61186 -33.08749 -30.74909 -30.33080 -28.47011 -27.27848 -26.16868 -23.87135 -22.88397 -20.91999 -19.00080 -18.56466 -18.05100 -17.67170 -16.89300 -16.65250 -16.37954 -16.33630 -15.53662 -15.47604 -14.85775 -14.78022 -14.31907 -14.15720 -14.11616 -13.89782 -13.18682 -13.00462 -12.87890 -12.69992 -12.48025 -12.38325 -12.36818 -12.06226 -11.46494 -11.18952 -10.88494 -10.53894 -9.98981 -9.53461 -9.30907 -8.14158 -6.20156 -0.07002 0.09680 1.41072 1.42104 1.55803 2.21893 2.45541 2.86970 3.16101 3.19626 3.61640 3.67569 3.96064 4.04198 4.24534 4.37415 4.47165 4.52915 4.54642 4.59368 4.70645 4.78706 4.80416 4.92450 5.06405 5.25074 5.27838 5.39408 5.42135 5.63156 5.66773 5.83729 6.26288 6.45685 6.48185 6.76550 6.93772 7.46699 8.98302 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.006371 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.599996 B = 4394.062254 C = 5273.122746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C 0.083 3.917 4 C -0.076 4.076 5 C -0.106 4.106 6 C -0.139 4.139 7 C 0.083 3.917 8 F -0.146 7.146 9 C -0.154 4.154 10 C -0.110 4.110 11 C 0.154 3.846 12 H 0.073 0.927 13 N -0.818 5.818 14 C 0.039 3.961 15 C -0.506 4.506 16 H 0.060 0.940 17 C -0.006 4.006 18 N -0.939 5.939 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.281 1.281 23 H 0.033 0.967 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.169 0.831 30 H 0.120 0.880 31 H 0.343 0.657 32 H 0.335 0.665 33 H -0.005 1.005 34 H -0.007 1.007 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -4.685 -18.713 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.254 6.254 3 C 0.038 3.962 4 C -0.076 4.076 5 C -0.163 4.163 6 C -0.158 4.158 7 C 0.064 3.936 8 F -0.125 7.125 9 C -0.174 4.174 10 C -0.113 4.113 11 C 0.043 3.957 12 H 0.091 0.909 13 N -0.346 5.346 14 C 0.002 3.998 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.202 4.202 18 N -0.581 5.581 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.207 1.207 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.137 0.863 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.186 0.814 30 H 0.138 0.862 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.013 0.987 34 H 0.011 0.989 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.202 -4.847 -17.880 18.656 hybrid contribution 0.330 0.950 0.558 1.150 sum -1.871 -3.897 -17.322 17.854 Atomic orbital electron populations 1.23209 0.77531 1.04925 1.00862 1.85967 1.21231 1.23909 1.94267 1.18462 0.99088 0.87495 0.91129 1.20339 0.97639 0.93330 0.96315 1.20795 1.02882 1.01191 0.91399 1.21138 1.01393 0.96087 0.97161 1.17867 0.98549 0.82303 0.94902 1.91466 1.80735 1.42816 1.97465 1.21153 1.02303 0.96247 0.97696 1.21283 0.98319 0.94150 0.97516 1.20166 0.96059 0.90934 0.88528 0.90926 1.58829 1.07507 1.13863 1.54400 1.19031 0.94925 0.93027 0.92821 1.21507 1.42847 0.97382 0.92705 0.92155 1.25908 0.95905 0.95464 1.02899 1.70101 1.50349 1.09900 1.27770 0.85436 0.77679 0.78916 0.79207 1.18800 1.20817 1.20654 0.94850 0.91895 0.86290 0.89434 0.89151 0.90430 0.81397 0.86219 0.84415 0.85279 0.98669 0.98906 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.91 113.37 1.24 1.83 16 2 O -0.34 -9.00 8.41 -93.00 -0.78 -9.79 16 3 C 0.08 2.44 5.67 22.49 0.13 2.57 16 4 C -0.08 -1.81 5.89 -19.77 -0.12 -1.93 16 5 C -0.11 -1.63 9.63 71.24 0.69 -0.95 16 6 C -0.14 -3.44 9.68 22.30 0.22 -3.22 16 7 C 0.08 2.67 7.30 22.37 0.16 2.83 16 8 F -0.15 -4.82 17.27 44.97 0.78 -4.05 16 9 C -0.15 -5.84 9.02 22.30 0.20 -5.64 16 10 C -0.11 -3.99 5.34 -19.77 -0.11 -4.09 16 11 C 0.15 6.49 2.55 44.17 0.11 6.60 16 12 H 0.07 3.11 6.98 -2.39 -0.02 3.10 16 13 N -0.82 -31.72 8.93 -171.79 -1.53 -33.25 16 14 C 0.04 2.08 3.36 29.85 0.10 2.18 16 15 C -0.51 -29.21 8.83 25.60 0.23 -28.99 16 16 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 17 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 18 N -0.94 -58.25 13.29 21.45 0.28 -57.97 16 19 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H 0.03 0.83 7.34 -2.38 -0.02 0.81 16 24 H 0.06 1.07 8.03 -2.39 -0.02 1.05 16 25 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 28 H 0.08 1.22 7.53 -2.39 -0.02 1.20 16 29 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.12 5.24 6.07 -2.91 -0.02 5.22 16 31 H 0.34 11.46 8.68 -89.69 -0.78 10.68 16 32 H 0.34 12.80 8.99 -89.69 -0.81 12.00 16 33 H 0.00 -0.28 7.12 -2.39 -0.02 -0.30 16 34 H -0.01 -0.42 7.98 -2.39 -0.02 -0.44 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -67.60 299.61 3.62 -63.99 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.46 Total: 21.87 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.31 Total: -28.67 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -1.25 Total: -91.22 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.78 Total: -9.79 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.78 Total: -4.05 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -67.60 3.62 -63.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904662.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.123 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds