Wall clock time and date at job start Mon Mar 30 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35955 * 116.99637 * 2 1 4 4 C 1.38663 * 120.06582 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.96783 * 180.27971 * 4 3 2 6 6 C 1.50700 * 119.95037 * 179.72541 * 5 4 3 7 7 H 1.09003 * 109.47501 * 145.00033 * 6 5 4 8 8 N 1.46895 * 109.47326 * 24.99366 * 6 5 4 9 9 C 1.53006 * 109.46650 * 264.99411 * 6 5 4 10 10 C 1.50707 * 109.46908 * 184.99906 * 9 6 5 11 11 H 1.08005 * 119.99774 * 0.02562 * 10 9 6 12 12 C 1.37874 * 119.99831 * 180.02562 * 10 9 6 13 13 N 1.31507 * 120.00184 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99616 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47531 * 59.99959 * 14 12 10 16 16 H 1.48502 * 109.47171 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47123 * 299.99748 * 14 12 10 18 18 C 1.38261 * 120.09810 * 359.46548 * 5 4 3 19 19 C 1.50696 * 119.94213 * 180.30214 * 18 5 4 20 20 C 1.38263 * 120.12239 * 0.55282 * 18 5 4 21 21 C 1.38334 * 120.03082 * 359.70601 * 20 18 5 22 22 F 1.35102 * 120.04706 * 179.97438 * 21 20 18 23 23 H 1.09003 * 109.47602 * 300.00449 * 1 2 3 24 24 H 1.09003 * 109.46951 * 60.00587 * 1 2 3 25 25 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.01219 * 359.97438 * 4 3 2 27 27 H 1.00905 * 111.00042 * 176.04626 * 8 6 5 28 28 H 1.00900 * 111.00334 * 300.00603 * 8 6 5 29 29 H 1.08999 * 109.47434 * 305.00032 * 9 6 5 30 30 H 1.08998 * 109.46911 * 65.00771 * 9 6 5 31 31 H 0.97003 * 120.00234 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47086 * 270.25203 * 19 18 5 33 33 H 1.09003 * 109.47061 * 30.25024 * 19 18 5 34 34 H 1.08999 * 109.47382 * 150.25015 * 19 18 5 35 35 H 1.07998 * 119.98539 * 179.72390 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3752 -0.0005 5 6 1.9215 3.6053 -0.0064 6 6 1.1018 4.8698 -0.0132 7 1 1.6101 5.6356 0.5727 8 7 -0.2182 4.6008 0.5726 9 6 0.9308 5.3588 -1.4529 10 6 0.2174 6.6864 -1.4510 11 1 -0.0836 7.1363 -0.5165 12 6 -0.0511 7.3263 -2.6424 13 7 0.3158 6.7786 -3.7803 14 14 -0.9347 8.9721 -2.6400 15 1 -0.1361 9.9617 -1.8732 16 1 -1.1008 9.4468 -4.0373 17 1 -2.2693 8.8164 -2.0077 18 6 3.3022 3.6778 -0.0005 19 6 3.9849 5.0212 0.0000 20 6 4.0579 2.5199 -0.0004 21 6 3.4333 1.2856 0.0001 22 9 4.1713 0.1540 -0.0003 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.2136 2.3200 -0.0014 27 1 -0.7638 5.4470 0.6385 28 1 -0.7098 3.8936 0.0469 29 1 1.9106 5.4736 -1.9165 30 1 0.3451 4.6325 -2.0162 31 1 0.1266 7.2287 -4.6185 32 1 4.1499 5.3453 -1.0276 33 1 3.3558 5.7483 0.5136 34 1 4.9427 4.9420 0.5142 35 1 5.1362 2.5791 -0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259973034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:52 Heat of formation + Delta-G solvation = -90.812628 kcal Electronic energy + Delta-G solvation = -18720.406978 eV Core-core repulsion = 15631.842681 eV Total energy + Delta-G solvation = -3088.564297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.80114 -41.24231 -39.24520 -36.76943 -34.50068 -33.05396 -31.12160 -29.92616 -28.84261 -27.24016 -25.99791 -23.88912 -22.58848 -21.35383 -19.28697 -18.53079 -18.09096 -17.46056 -17.13723 -16.60309 -16.32849 -16.03283 -15.49861 -15.46371 -15.05358 -14.77859 -14.26465 -14.19090 -14.01325 -13.89599 -13.20750 -12.94909 -12.91854 -12.68758 -12.64394 -12.44685 -12.11914 -11.96569 -11.90931 -11.59731 -11.14085 -10.58993 -9.81867 -9.46701 -8.95699 -8.20004 -6.31894 0.15006 0.26722 1.42385 1.43457 1.51132 2.21723 2.39612 2.55416 3.13723 3.22540 3.68550 3.72553 3.89305 4.09980 4.25429 4.36100 4.37217 4.51002 4.65365 4.68081 4.71930 4.85187 4.88852 4.91735 4.99041 5.20569 5.25503 5.42664 5.47858 5.71060 5.73483 5.77687 6.16238 6.29401 6.37562 6.68663 6.84467 7.38279 8.90624 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.005670 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.766286 B = 4937.351002 C = 5411.892477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.080 3.920 4 C -0.168 4.168 5 C -0.044 4.044 6 C 0.137 3.863 7 H 0.087 0.913 8 N -0.830 5.830 9 C 0.014 3.986 10 C -0.534 4.534 11 H 0.068 0.932 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.961 3.039 15 H -0.268 1.268 16 H -0.291 1.291 17 H -0.266 1.266 18 C -0.099 4.099 19 C -0.109 4.109 20 C -0.111 4.111 21 C 0.038 3.962 22 F -0.143 7.143 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.127 0.873 26 H 0.149 0.851 27 H 0.348 0.652 28 H 0.332 0.668 29 H -0.003 1.003 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -8.374 8.462 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.034 3.966 4 C -0.187 4.187 5 C -0.045 4.045 6 C 0.026 3.974 7 H 0.105 0.895 8 N -0.359 5.359 9 C -0.024 4.024 10 C -0.572 4.572 11 H 0.086 0.914 12 C -0.193 4.193 13 N -0.571 5.571 14 Si 0.786 3.214 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.190 1.190 18 C -0.100 4.100 19 C -0.166 4.166 20 C -0.129 4.129 21 C 0.019 3.981 22 F -0.122 7.122 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.145 0.855 26 H 0.166 0.834 27 H 0.161 0.839 28 H 0.144 0.856 29 H 0.015 0.985 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.015 -8.813 8.944 12.913 hybrid contribution -0.957 0.976 -1.552 2.069 sum 2.058 -7.837 7.391 10.968 Atomic orbital electron populations 1.23392 0.76119 1.05846 1.02293 1.86058 1.23747 1.25586 1.88979 1.19061 0.90967 0.85883 1.00682 1.21010 1.00988 0.90376 1.06325 1.19927 0.93800 0.94862 0.95896 1.20337 0.89977 0.92269 0.94838 0.89545 1.59306 1.05113 1.15154 1.56294 1.19607 0.95589 0.94991 0.92231 1.21514 1.37484 1.05375 0.92838 0.91428 1.25890 0.96621 1.01488 0.95321 1.70099 1.48165 1.40658 0.98179 0.85565 0.79367 0.79618 0.76871 1.19263 1.21637 1.19048 1.19726 0.92539 0.96307 1.01423 1.20807 1.00933 0.92207 1.02614 1.21007 1.01761 0.88791 1.01351 1.17113 0.86165 0.83101 1.11767 1.91433 1.76545 1.49509 1.94738 0.91415 0.92371 0.85489 0.83386 0.83865 0.85553 0.98506 0.99507 0.92951 0.91745 0.91257 0.88954 0.81691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.95 10.36 -93.05 -0.96 -10.91 16 3 C 0.08 2.64 6.69 22.53 0.15 2.79 16 4 C -0.17 -5.57 8.26 22.36 0.18 -5.39 16 5 C -0.04 -1.57 5.06 -19.87 -0.10 -1.67 16 6 C 0.14 5.28 2.49 44.17 0.11 5.39 16 7 H 0.09 3.32 6.14 -2.39 -0.01 3.31 16 8 N -0.83 -28.50 8.79 -171.80 -1.51 -30.01 16 9 C 0.01 0.70 4.60 29.85 0.14 0.84 16 10 C -0.53 -27.60 8.55 25.60 0.22 -27.39 16 11 H 0.07 3.28 7.15 -2.91 -0.02 3.26 16 12 C 0.01 0.28 5.46 84.66 0.46 0.74 16 13 N -0.93 -54.45 13.29 21.44 0.28 -54.16 16 14 Si 0.96 41.97 29.54 68.60 2.03 44.00 16 15 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 16 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 C -0.10 -3.21 5.88 -19.85 -0.12 -3.32 16 19 C -0.11 -3.14 9.42 71.23 0.67 -2.47 16 20 C -0.11 -3.27 9.67 22.30 0.22 -3.06 16 21 C 0.04 1.25 7.31 22.45 0.16 1.41 16 22 F -0.14 -4.70 17.11 44.97 0.77 -3.93 16 23 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 24 H 0.06 1.22 7.66 -2.39 -0.02 1.20 16 25 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.15 4.44 4.53 -2.91 -0.01 4.43 16 27 H 0.35 12.06 7.90 -89.69 -0.71 11.35 16 28 H 0.33 10.88 7.21 -89.69 -0.65 10.23 16 29 H 0.00 -0.19 7.96 -2.39 -0.02 -0.20 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.07 6.02 -2.39 -0.01 2.06 16 34 H 0.09 2.01 8.08 -2.39 -0.02 1.99 16 35 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -62.59 294.73 3.59 -59.00 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.22 Total: 26.64 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 3.21 Total: -30.63 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.23 Total: -84.17 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.96 Total: -10.91 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.77 Total: -3.93 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -62.59 3.59 -59.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.812 kcal (2) G-P(sol) polarization free energy of solvation -62.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds