Wall clock time and date at job start Mon Mar 30 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35954 * 117.00122 * 2 1 4 4 C 1.38662 * 120.06248 * 359.97438 * 3 2 1 5 5 C 1.38180 * 119.97038 * 179.97438 * 4 3 2 6 6 C 1.50693 * 119.95585 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.47575 * 219.98155 * 6 5 4 8 8 N 1.46900 * 109.46866 * 339.97801 * 6 5 4 9 9 C 1.52996 * 109.47346 * 99.97557 * 6 5 4 10 10 C 1.50699 * 109.47497 * 175.00219 * 9 6 5 11 11 H 1.08001 * 119.99799 * 0.02562 * 10 9 6 12 12 C 1.37868 * 120.00235 * 180.02562 * 10 9 6 13 13 N 1.31517 * 120.00371 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00018 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47024 * 90.00095 * 14 12 10 16 16 H 1.48504 * 109.46775 * 210.00301 * 14 12 10 17 17 H 1.48495 * 109.47051 * 329.99951 * 14 12 10 18 18 C 1.38265 * 120.09178 * 359.97438 * 5 4 3 19 19 C 1.50703 * 119.93414 * 179.97438 * 18 5 4 20 20 C 1.38255 * 120.12920 * 0.25562 * 18 5 4 21 21 C 1.38334 * 120.02845 * 359.48909 * 20 18 5 22 22 F 1.35094 * 120.04837 * 180.23096 * 21 20 18 23 23 H 1.09000 * 109.46824 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46714 * 300.00180 * 1 2 3 25 25 H 1.08999 * 109.46968 * 60.00205 * 1 2 3 26 26 H 1.08002 * 120.01424 * 359.97438 * 4 3 2 27 27 H 1.00898 * 111.00186 * 59.99975 * 8 6 5 28 28 H 1.00903 * 111.00482 * 183.95390 * 8 6 5 29 29 H 1.08997 * 109.47510 * 295.00333 * 9 6 5 30 30 H 1.09002 * 109.46863 * 55.00470 * 9 6 5 31 31 H 0.96996 * 120.00254 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47152 * 89.99881 * 19 18 5 33 33 H 1.09001 * 109.46980 * 329.99982 * 19 18 5 34 34 H 1.09004 * 109.47113 * 209.99963 * 19 18 5 35 35 H 1.08001 * 119.98769 * 179.72426 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 -0.0005 5 6 1.9217 3.6053 0.0000 6 6 1.1021 4.8698 0.0000 7 1 1.5655 5.6032 -0.6600 8 7 -0.2560 4.5730 -0.4748 9 6 1.0338 5.4334 1.4207 10 6 0.3195 6.7601 1.4012 11 1 -0.0494 7.1611 0.4687 12 6 0.1368 7.4621 2.5736 13 7 0.5863 6.9741 3.7092 14 14 -0.7494 9.1064 2.5494 15 1 -2.2050 8.8872 2.7449 16 1 -0.2271 9.9663 3.6418 17 1 -0.5203 9.7729 1.2424 18 6 3.3025 3.6776 0.0016 19 6 3.9852 5.0211 0.0016 20 6 4.0581 2.5198 -0.0027 21 6 3.4335 1.2855 0.0021 22 9 4.1714 0.1539 0.0027 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2138 2.3200 -0.0014 27 1 -0.7072 3.8950 0.1209 28 1 -0.8067 5.4155 -0.5453 29 1 0.4916 4.7383 2.0617 30 1 2.0442 5.5704 1.8062 31 1 0.4581 7.4682 4.5340 32 1 4.1485 5.3457 1.0293 33 1 3.3569 5.7479 -0.5134 34 1 4.9438 4.9416 -0.5111 35 1 5.1365 2.5790 -0.0059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:55 Heat of formation + Delta-G solvation = -72.209301 kcal Electronic energy + Delta-G solvation = -18724.758616 eV Core-core repulsion = 15637.001020 eV Total energy + Delta-G solvation = -3087.757596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.48757 -39.97441 -37.98603 -35.20108 -32.55938 -31.80573 -29.75680 -28.20849 -27.67442 -25.92813 -24.38644 -22.28001 -21.26309 -19.89120 -17.93412 -16.94290 -16.53469 -16.14410 -15.92782 -14.88503 -14.84220 -14.67920 -14.22706 -14.08828 -13.86659 -13.29619 -12.80485 -12.68507 -12.42959 -12.17638 -11.87130 -11.77745 -11.54211 -11.29039 -11.00647 -10.89835 -10.60927 -10.54681 -10.27701 -9.95433 -9.22958 -8.55290 -8.46259 -8.00062 -7.58572 -6.14165 -4.19375 1.47428 1.55832 3.22265 3.30017 3.31388 3.32178 3.86424 4.33396 4.51249 4.95000 5.02221 5.15547 5.23002 5.24201 5.33364 5.39053 5.53217 5.64569 5.73352 5.88417 6.06608 6.18958 6.23611 6.33416 6.48554 6.50435 6.65312 6.94624 6.98850 7.38529 7.48065 7.52674 7.78500 7.94240 8.10680 8.23581 8.87229 9.46310 10.96230 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.005653 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.561367 B = 4951.607027 C = 5442.131126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.084 3.916 4 C -0.165 4.165 5 C -0.024 4.024 6 C 0.123 3.877 7 H 0.086 0.914 8 N -0.842 5.842 9 C 0.002 3.998 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.090 4.090 19 C -0.112 4.112 20 C -0.119 4.119 21 C 0.052 3.948 22 F -0.142 7.142 23 H 0.097 0.903 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.140 0.860 27 H 0.327 0.673 28 H 0.349 0.651 29 H 0.016 0.984 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 -8.875 -7.124 11.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.039 3.961 4 C -0.184 4.184 5 C -0.024 4.024 6 C 0.012 3.988 7 H 0.104 0.896 8 N -0.370 5.370 9 C -0.037 4.037 10 C -0.565 4.565 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.090 4.090 19 C -0.168 4.168 20 C -0.138 4.138 21 C 0.032 3.968 22 F -0.120 7.120 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.158 0.842 27 H 0.139 0.861 28 H 0.162 0.838 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.651 -9.328 -7.604 12.323 hybrid contribution -0.929 1.171 1.194 1.913 sum 1.722 -8.157 -6.410 10.516 Atomic orbital electron populations 1.23072 0.78255 1.03647 1.01851 1.86066 1.21508 1.26185 1.89212 1.18947 0.90666 0.85450 1.01048 1.20953 1.00478 0.90593 1.06404 1.19931 0.93071 0.95190 0.94246 1.20609 0.88219 0.91166 0.98809 0.89609 1.59311 1.04430 1.17274 1.56029 1.19780 0.98279 0.95782 0.89810 1.21130 1.37435 1.04398 0.93578 0.92488 1.25006 0.95588 0.97929 0.95578 1.69966 1.45732 1.38652 0.98438 0.86592 0.79812 0.83773 0.77826 1.20672 1.21191 1.19773 1.19495 0.92823 0.95178 1.01545 1.20815 0.99552 0.93300 1.03152 1.20751 1.00365 0.89770 1.02890 1.16837 0.85867 0.82683 1.11409 1.91438 1.76561 1.49359 1.94688 0.88440 0.92417 0.92313 0.84218 0.86143 0.83780 0.96612 0.95594 0.92837 0.90424 0.90543 0.92205 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.93 10.36 -19.59 -0.20 -5.13 16 3 C 0.08 1.42 6.69 -39.18 -0.26 1.16 16 4 C -0.17 -2.78 8.24 -39.45 -0.33 -3.10 16 5 C -0.02 -0.42 5.09 -104.64 -0.53 -0.96 16 6 C 0.12 2.37 2.43 -68.87 -0.17 2.21 16 7 H 0.09 1.67 6.40 -51.93 -0.33 1.34 16 8 N -0.84 -14.74 8.67 -5.66 -0.05 -14.79 16 9 C 0.00 0.04 4.54 -27.89 -0.13 -0.08 16 10 C -0.53 -13.59 8.55 -34.44 -0.29 -13.89 16 11 H 0.06 1.41 7.14 -52.49 -0.37 1.04 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 14 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C -0.09 -1.50 5.88 -104.60 -0.61 -2.11 16 19 C -0.11 -1.69 8.92 36.01 0.32 -1.37 16 20 C -0.12 -1.86 9.67 -39.54 -0.38 -2.24 16 21 C 0.05 0.88 7.31 -39.30 -0.29 0.59 16 22 F -0.14 -2.41 17.11 2.25 0.04 -2.37 16 23 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 25 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.14 2.13 4.48 -52.49 -0.24 1.90 16 27 H 0.33 5.45 7.28 -39.29 -0.29 5.17 16 28 H 0.35 6.21 7.90 -39.29 -0.31 5.90 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.66 7.07 -51.93 -0.37 0.29 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.08 1.24 7.76 -51.93 -0.40 0.84 16 33 H 0.08 1.19 6.12 -51.93 -0.32 0.88 16 34 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 293.09 15.07 4.42 4.42 Total: -1.00 -29.29 293.09 -6.10 -35.39 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.25 Total: 8.67 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -1.78 Total: -16.95 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.69 Total: -39.56 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.20 Total: -5.13 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.29 -6.10 -35.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.819 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds